ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474299.1| Oryza sativa (japonica cultivar-group), predic... 100 7e-18
2dbj|AK073170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
3dbj|AK072097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
4gb|AY105879.1| Zea mays PCO084688 mRNA sequence 74 4e-10
5emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 68 3e-08
8ref|XM_320948.2| Anopheles gambiae str. PEST ENSANGP00000017639 ... 44 0.38
9ref|XM_517563.1| PREDICTED: Pan troglodytes similar to Arg/Abl-i... 42 1.5
10ref|NM_021069.3| Homo sapiens sorbin and SH3 domain containing 2... 42 1.5
11gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 m... 42 1.5
12emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, B... 42 1.5
13dbj|AK056628.1| Homo sapiens cDNA FLJ32066 fis, clone OCBBF10000... 42 1.5
14gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complet... 42 1.5
15dbj|AB018320.1| Homo sapiens mRNA for KIAA0777 protein, partial cds 42 1.5
16gb|AC158530.2| Mus musculus BAC clone RP23-255H12 from chromosom... 42 1.5
17gb|AY680387.1| Pinus taeda homeobox transcription factor KN4 (Kn... 40 5.9
18ref|XM_469950.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
19gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, com... 40 5.9
20ref|XM_607566.2| PREDICTED: Bos taurus similar to melanoma antig... 40 5.9
21gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, c... 40 5.9
22gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, com... 40 5.9
23gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 40 5.9
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
25gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, com... 40 5.9
26emb|CT025157.6| Mouse DNA sequence from clone RP23-292D13 on chr... 40 5.9
27gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosom... 40 5.9
28gb|AC158150.9| Mus musculus chromosome 5, clone RP23-173B13, com... 40 5.9
29emb|AL672181.11| Mouse DNA sequence from clone RP23-223D16 on ch... 40 5.9
30gb|AC164548.3| Mus musculus BAC clone RP24-243A3 from chromosome... 40 5.9
31gb|AC160411.8| Mus musculus BAC RP23-231J3 (Roswell Park Cancer... 40 5.9
32gb|AF337038.2| Chlamydomonas reinhardtii copper target homolog 1... 40 5.9
33gb|AC160405.7| Mus musculus BAC RP23-380K24 (Roswell Park Cance... 40 5.9
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35gb|AC154315.2| Mus musculus BAC clone RP23-348I6 from chromosome... 40 5.9
36gb|AC009295.14|AC009295 Mus musculus chromosome 10, clone RP21-3... 40 5.9
37gb|AC126673.3| Mus musculus BAC clone RP24-491A6 from chromosome... 40 5.9
38gb|AC012187.3|F13K23 Sequence of BAC F13K23 from Arabidopsis tha... 40 5.9
39gb|AC108398.9| Mus musculus chromosome 13, clone RP24-350L19, co... 40 5.9
40gb|AC140356.3| Mus musculus BAC clone RP23-216B19 from 6, comple... 40 5.9
41gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, compl... 40 5.9
42gb|AY737719.1| Sus scrofa inter-alpha-trypsin inhibitor heavy ch... 40 5.9 
>ref|XM_474299.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1380

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 169/208 (81%), Gaps = 3/208 (1%)
 Strand = Plus / Minus

                                                                        
Query: 202  tagtcccacaagaggttgatcatcgagttggccagcccggcctccttgaaggtctgctcg 261
            ||||||||||| |||||||||||||||||||||| |||||| || ||||| || |  || 
Sbjct: 1379 tagtcccacaaaaggttgatcatcgagttggccaacccggcttctttgaaagttttatca 1320

                                                                        
Query: 262  ctctcgtactgcagcttgttgatggccgcgcccgggatgggctggccgaagtggaaggcc 321
            |||||||||| |||   |||  |||  || |  || ||||||||  |||| ||||| |||
Sbjct: 1319 ctctcgtactccag---gtttgtggatgccctaggaatgggctgtacgaaatggaaagcc 1263

                                                                        
Query: 322  cgcttctccccgtcctccacctcagaggagcacaacgaccacagcagcttgatgggatcc 381
              ||| |||||||||||||| | ||   |||| || |||||||| ||||| || ||||||
Sbjct: 1262 ttcttatccccgtcctccacttgaggatagcagaatgaccacaggagcttaataggatcc 1203

                                        
Query: 382  gtgtggaggaaattcctctggatcctcc 409
            ||||| ||||||||||||||||||||||
Sbjct: 1202 gtgtgaaggaaattcctctggatcctcc 1175
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>dbj|AK073170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023O17, full
            insert sequence
          Length = 1814

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 169/208 (81%), Gaps = 3/208 (1%)
 Strand = Plus / Minus

                                                                        
Query: 202  tagtcccacaagaggttgatcatcgagttggccagcccggcctccttgaaggtctgctcg 261
            ||||||||||| |||||||||||||||||||||| |||||| || ||||| || |  || 
Sbjct: 1528 tagtcccacaaaaggttgatcatcgagttggccaacccggcttctttgaaagttttatca 1469

                                                                        
Query: 262  ctctcgtactgcagcttgttgatggccgcgcccgggatgggctggccgaagtggaaggcc 321
            |||||||||| |||   |||  |||  || |  || ||||||||  |||| ||||| |||
Sbjct: 1468 ctctcgtactccag---gtttgtggatgccctaggaatgggctgtacgaaatggaaagcc 1412

                                                                        
Query: 322  cgcttctccccgtcctccacctcagaggagcacaacgaccacagcagcttgatgggatcc 381
              ||| |||||||||||||| | ||   |||| || |||||||| ||||| || ||||||
Sbjct: 1411 ttcttatccccgtcctccacttgaggatagcagaatgaccacaggagcttaataggatcc 1352

                                        
Query: 382  gtgtggaggaaattcctctggatcctcc 409
            ||||| ||||||||||||||||||||||
Sbjct: 1351 gtgtgaaggaaattcctctggatcctcc 1324
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>dbj|AK072097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H05, full
            insert sequence
          Length = 1259

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 168/208 (80%), Gaps = 3/208 (1%)
 Strand = Plus / Minus

                                                                        
Query: 202  tagtcccacaagaggttgatcatcgagttggccagcccggcctccttgaaggtctgctcg 261
            ||||||||||| |||||||||||||||||||||| |||||| || ||||| || |  || 
Sbjct: 1003 tagtcccacaaaaggttgatcatcgagttggccaacccggcttctttgaaagttttatca 944

                                                                        
Query: 262  ctctcgtactgcagcttgttgatggccgcgcccgggatgggctggccgaagtggaaggcc 321
            |||||||||| |||   |||  |||  || |  || ||||||||  |||| ||||| |||
Sbjct: 943  ctctcgtactccag---gtttgtggatgccctaggaatgggctgtacgaaatggaaagcc 887

                                                                        
Query: 322  cgcttctccccgtcctccacctcagaggagcacaacgaccacagcagcttgatgggatcc 381
              ||| ||||||||| |||| | ||   |||| || |||||||| ||||| || ||||||
Sbjct: 886  ttcttatccccgtcccccacttgaggatagcagaatgaccacaggagcttaataggatcc 827

                                        
Query: 382  gtgtggaggaaattcctctggatcctcc 409
            ||||| ||||||||||||||||||||||
Sbjct: 826  gtgtgaaggaaattcctctggatcctcc 799
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>gb|AY105879.1| Zea mays PCO084688 mRNA sequence
          Length = 1044

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                             
Query: 203  agtcccacaagaggttgatcatcgagttggccagcccggcctccttgaa 251
            ||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1007 agtccaacaagaggttgatcatcgagttggccagccctgcttccttgaa 959



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/108 (82%)
 Strand = Plus / Minus

                                                                       
Query: 303 ctggccgaagtggaaggcccgcttctccccgtcctccacctcagaggagcacaacgacca 362
           |||| |||||||||| |||| | ||||||||||||| |||| ||  | ||| || |||||
Sbjct: 910 ctggacgaagtggaaagccctcctctccccgtcctcgacctgaggagcgcagaatgacca 851

                                                           
Query: 363 cagcagcttgatgggatccgtgtggaggaaattcctctggatcctccg 410
           ||  |||||||| ||||| ||||| ||||| || || |||||||||||
Sbjct: 850 caagagcttgataggatctgtgtgaaggaagtttctttggatcctccg 803
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
              complete sequence
          Length = 190432

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                
Query: 202    tagtcccacaagaggttgatcatcgagttggccagcccggcctccttgaa 251
              ||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 167272 tagtcccacaaaaggttgatcatcgagttggccaacccggcttctttgaa 167223



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                
Query: 376    ggatccgtgtggaggaaattcctctggatcctcc 409
              ||||||||||| ||||||||||||||||||||||
Sbjct: 167021 ggatccgtgtgaaggaaattcctctggatcctcc 166988
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 202      tagtcccacaagaggttgatcatcgagttggccagcccggcctccttgaa 251
                ||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 34255890 tagtcccacaaaaggttgatcatcgagttggccaacccggcttctttgaa 34255841



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 376      ggatccgtgtggaggaaattcctctggatcctcc 409
                ||||||||||| ||||||||||||||||||||||
Sbjct: 34255639 ggatccgtgtgaaggaaattcctctggatcctcc 34255606
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>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete
             sequence
          Length = 95419

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 202   tagtcccacaagaggttgatcatcgagttggccagcccggcctccttgaa 251
             ||||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct: 38506 tagtcccacaaaaggttgatcatcgagttggccaacccggcttctttgaa 38457



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 376   ggatccgtgtggaggaaattcctctggatcctcc 409
             ||||||||||| ||||||||||||||||||||||
Sbjct: 38255 ggatccgtgtgaaggaaattcctctggatcctcc 38222
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>ref|XM_320948.2| Anopheles gambiae str. PEST ENSANGP00000017639 (ENSANGG00000015150),
            partial mRNA
          Length = 4186

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 255  ctgctcgctctcgtactgcagcttgt 280
            |||||||||||||||| |||||||||
Sbjct: 1231 ctgctcgctctcgtacggcagcttgt 1206
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>ref|XM_517563.1| PREDICTED: Pan troglodytes similar to Arg/Abl-interacting protein
            ArgBP2 (LOC461640), mRNA
          Length = 5295

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 255  ctgctcgctctcgtactgcag 275
            |||||||||||||||||||||
Sbjct: 2181 ctgctcgctctcgtactgcag 2161
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>ref|NM_021069.3| Homo sapiens sorbin and SH3 domain containing 2 (SORBS2), transcript
            variant 2, mRNA
          Length = 5996

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 255  ctgctcgctctcgtactgcag 275
            |||||||||||||||||||||
Sbjct: 1962 ctgctcgctctcgtactgcag 1942
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>gb|AC118543.30| Mus musculus strain C57BL/6J clone rp23-254b17 map 17, complete
            sequence
          Length = 241570

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  acaaggaagaaaacaaaaaag 121
            |||||||||||||||||||||
Sbjct: 2941 acaaggaagaaaacaaaaaag 2921
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>emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project)
          Length = 104607

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   acaaggaagaaaacaaaaaag 121
             |||||||||||||||||||||
Sbjct: 14948 acaaggaagaaaacaaaaaag 14928
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>dbj|AK056628.1| Homo sapiens cDNA FLJ32066 fis, clone OCBBF1000091, highly similar to
            SORBIN
          Length = 4304

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 255  ctgctcgctctcgtactgcag 275
            |||||||||||||||||||||
Sbjct: 2148 ctgctcgctctcgtactgcag 2128
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>gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complete sequence
          Length = 169814

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 255    ctgctcgctctcgtactgcag 275
              |||||||||||||||||||||
Sbjct: 129536 ctgctcgctctcgtactgcag 129556
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>dbj|AB018320.1| Homo sapiens mRNA for KIAA0777 protein, partial cds
          Length = 4118

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 255  ctgctcgctctcgtactgcag 275
            |||||||||||||||||||||
Sbjct: 1962 ctgctcgctctcgtactgcag 1942
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>gb|AC158530.2| Mus musculus BAC clone RP23-255H12 from chromosome 17, complete
             sequence
          Length = 154287

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   acaaggaagaaaacaaaaaag 121
             |||||||||||||||||||||
Sbjct: 35279 acaaggaagaaaacaaaaaag 35259
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>gb|AY680387.1| Pinus taeda homeobox transcription factor KN4 (Kn4) gene, exons 1,
           2, 3 and partial cds
          Length = 1466

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 346 gaggagcacaacgaccacag 365
           ||||||||||||||||||||
Sbjct: 820 gaggagcacaacgaccacag 801
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>ref|XM_469950.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1754

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 320 cccgcttctccccgtcctcc 339
           ||||||||||||||||||||
Sbjct: 33  cccgcttctccccgtcctcc 14
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>gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, complete sequence
          Length = 187432

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ccggcctagtcccacaagag 215
              ||||||||||||||||||||
Sbjct: 108234 ccggcctagtcccacaagag 108253
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>ref|XM_607566.2| PREDICTED: Bos taurus similar to melanoma antigen family D, 4 isoform
            1 (LOC529126), partial mRNA
          Length = 2485

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 317  aggcccgcttctccccgtcc 336
            ||||||||||||||||||||
Sbjct: 2359 aggcccgcttctccccgtcc 2378
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>gb|AC131079.11| Mus musculus chromosome 14, clone RP23-434L17, complete sequence
          Length = 203276

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   aaggaagaaaacaaaaaagc 122
             ||||||||||||||||||||
Sbjct: 68973 aaggaagaaaacaaaaaagc 68954
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>gb|AC115035.5| Mus musculus chromosome 3, clone RP24-273F11, complete sequence
          Length = 131719

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   gacaaggaagaaaacaaaaa 119
             ||||||||||||||||||||
Sbjct: 22110 gacaaggaagaaaacaaaaa 22091
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   cccgcttctccccgtcctcc 339
             ||||||||||||||||||||
Sbjct: 95899 cccgcttctccccgtcctcc 95918
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      cccgcttctccccgtcctcc 339
                ||||||||||||||||||||
Sbjct: 32648008 cccgcttctccccgtcctcc 32647989
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>gb|AC162790.2| Mus musculus chromosome 3, clone RP24-397C18, complete sequence
          Length = 169244

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   gacaaggaagaaaacaaaaa 119
             ||||||||||||||||||||
Sbjct: 82491 gacaaggaagaaaacaaaaa 82510
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>emb|CT025157.6| Mouse DNA sequence from clone RP23-292D13 on chromosome 14, complete
             sequence
          Length = 179561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ccggcctagtcccacaagag 215
             ||||||||||||||||||||
Sbjct: 89449 ccggcctagtcccacaagag 89468
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>gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosome 9, complete sequence
          Length = 196150

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     cacttgggctccaaccctag 88
              ||||||||||||||||||||
Sbjct: 131352 cacttgggctccaaccctag 131371
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>gb|AC158150.9| Mus musculus chromosome 5, clone RP23-173B13, complete sequence
          Length = 227131

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ccggcctagtcccacaagag 215
              ||||||||||||||||||||
Sbjct: 134883 ccggcctagtcccacaagag 134902
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>emb|AL672181.11| Mouse DNA sequence from clone RP23-223D16 on chromosome 11, complete
              sequence
          Length = 181460

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ccggcctagtcccacaagag 215
              ||||||||||||||||||||
Sbjct: 115784 ccggcctagtcccacaagag 115803
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>gb|AC164548.3| Mus musculus BAC clone RP24-243A3 from chromosome 9, complete sequence
          Length = 165415

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     cacttgggctccaaccctag 88
              ||||||||||||||||||||
Sbjct: 151388 cacttgggctccaaccctag 151369
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>gb|AC160411.8| Mus musculus  BAC RP23-231J3 (Roswell Park Cancer Institute (C57BL/6J
            Female) Mouse BAC Library) complete sequence
          Length = 207444

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 57   agcatttttccacacttgggctcc 80
            |||||||| |||||||||||||||
Sbjct: 9442 agcattttgccacacttgggctcc 9465
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>gb|AF337038.2| Chlamydomonas reinhardtii copper target homolog 1 protein (CTH1)
            gene, complete cds; nuclear gene for chloroplast product
          Length = 5249

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  cggcctccttgaaggtctgc 258
            ||||||||||||||||||||
Sbjct: 2604 cggcctccttgaaggtctgc 2585
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>gb|AC160405.7| Mus musculus  BAC RP23-380K24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184615

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     agcatttttccacacttgggctcc 80
              |||||||| |||||||||||||||
Sbjct: 115616 agcattttgccacacttgggctcc 115639
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 320      cccgcttctccccgtcctcc 339
                ||||||||||||||||||||
Sbjct: 32738518 cccgcttctccccgtcctcc 32738499
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>gb|AC154315.2| Mus musculus BAC clone RP23-348I6 from chromosome 14, complete sequence
          Length = 187052

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ccggcctagtcccacaagag 215
             ||||||||||||||||||||
Sbjct: 64308 ccggcctagtcccacaagag 64327
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>gb|AC009295.14|AC009295 Mus musculus chromosome 10, clone RP21-39C4, complete sequence
          Length = 159108

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    agcatttttccacacttgggctcc 80
             |||||||| |||||||||||||||
Sbjct: 97984 agcattttgccacacttgggctcc 97961
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>gb|AC126673.3| Mus musculus BAC clone RP24-491A6 from chromosome 13, complete sequence
          Length = 123585

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ccggcctagtcccacaagag 215
              ||||||||||||||||||||
Sbjct: 100853 ccggcctagtcccacaagag 100872
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>gb|AC012187.3|F13K23 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 74328

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ctataaacaaaaacatgacc 44
             ||||||||||||||||||||
Sbjct: 37449 ctataaacaaaaacatgacc 37430
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>gb|AC108398.9| Mus musculus chromosome 13, clone RP24-350L19, complete sequence
          Length = 137487

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ccggcctagtcccacaagag 215
             ||||||||||||||||||||
Sbjct: 17726 ccggcctagtcccacaagag 17745
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>gb|AC140356.3| Mus musculus BAC clone RP23-216B19 from 6, complete sequence
          Length = 211504

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ccggcctagtcccacaagag 215
              ||||||||||||||||||||
Sbjct: 122443 ccggcctagtcccacaagag 122462
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>gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, complete sequence
          Length = 170192

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   acaaggaagaaaacaaaaaa 120
             ||||||||||||||||||||
Sbjct: 36076 acaaggaagaaaacaaaaaa 36095
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>gb|AY737719.1| Sus scrofa inter-alpha-trypsin inhibitor heavy chain 4 (ITIH4)
           gene, promoter sequence
          Length = 1599

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 ttggccagcccggcctcctt 248
           ||||||||||||||||||||
Sbjct: 135 ttggccagcccggcctcctt 154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,946,187
Number of Sequences: 3902068
Number of extensions: 4946187
Number of successful extensions: 93743
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93584
Number of HSP's gapped (non-prelim): 157
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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