ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC ... 28 7.1
2COX10_YARLI (Q6C0L2) Protoheme IX farnesyltransferase, mitochond... 28 7.1
3EFTS_MANSM (Q65R71) Elongation factor Ts (EF-Ts) 27 9.3
4EFTS_HAEIN (P43894) Elongation factor Ts (EF-Ts) 27 9.3
5EFTS_HAEI8 (Q4QLZ5) Elongation factor Ts (EF-Ts) 27 9.3

>ALEUL_ARATH (Q8RWQ9) Thiol protease aleurain-like precursor (EC 3.4.22.16)|
          Length = 358

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 35  NIGSLAGLNMRGLSFQLCIIQFASIYWFLFNSF 133
           N+  +   N +GLS++L + QFA + W  F  +
Sbjct: 86  NLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRY 118



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>COX10_YARLI (Q6C0L2) Protoheme IX farnesyltransferase, mitochondrial precursor|
           (EC 2.5.1.-) (Heme O synthase)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 29  NPNIGSLAGLNMRGLSFQLCI-IQFASI--YWFLFNSFANN*LID*WAF 166
           NP + +  GL    L F LC+ + + ++  +WF+ +S   N  +  WAF
Sbjct: 355 NPGLNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWMAWWAF 403



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>EFTS_MANSM (Q65R71) Elongation factor Ts (EF-Ts)|
          Length = 281

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 363 TIGNFIRLEVGEGI 322
           ++ NFIRLEVGEGI
Sbjct: 251 SVANFIRLEVGEGI 264



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>EFTS_HAEIN (P43894) Elongation factor Ts (EF-Ts)|
          Length = 282

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 363 TIGNFIRLEVGEGI 322
           ++ NFIRLEVGEGI
Sbjct: 250 SVSNFIRLEVGEGI 263



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>EFTS_HAEI8 (Q4QLZ5) Elongation factor Ts (EF-Ts)|
          Length = 282

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -3

Query: 363 TIGNFIRLEVGEGI 322
           ++ NFIRLEVGEGI
Sbjct: 250 SVSNFIRLEVGEGI 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,435,911
Number of Sequences: 219361
Number of extensions: 770577
Number of successful extensions: 1517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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