ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal0b04 |
|---|---|
| Clone Library Name | barley_pub |
>DCD_LEIXX (Q6AC71) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 201 Score = 35.0 bits (79), Expect = 0.18 Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 15/129 (11%) Frame = -1 Query: 574 LHPSEFISEK*RRIHRFKDEAPQTRSTKAKLRRRHQWMHPSARLLLATTSRQGAAEASGL 395 LHP EF+ + D+ K+ L R H +A + S E S + Sbjct: 74 LHPGEFVLGSTFELVSLPDDVAARLEGKSSLGRLGLLTHSTAGFIDPGFSGHVTLELSNV 133 Query: 394 PQHDLLRRWPGLT---------------PSGISGNGKRAHGQRPVMVARAMTNLHRQDVA 260 + + WPG+ P G + R GQR +R+ N HR DV+ Sbjct: 134 ATLPI-KLWPGMKIGQMCFFRLSSAAEKPYGSAEYSSRYQGQRGPTASRSFLNFHRTDVS 192 Query: 259 VAPARRRSA 233 A R S+ Sbjct: 193 GTEAGRSSS 201
>DCD_STRCO (Q9X8W0) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 191 Score = 33.5 bits (75), Expect = 0.51 Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 15/119 (12%) Frame = -1 Query: 574 LHPSEFISEK*RRIHRFKDEAPQTRSTKAKLRRRHQWMHPSARLLLATTSRQGAAEASGL 395 LHP EF+ + D+ K+ L R H +A + S E S L Sbjct: 74 LHPGEFVLASTYEVVSLPDDLASRLEGKSSLGRLGLVTHSTAGFIDPGFSGHVTLELSNL 133 Query: 394 PQHDLLRRWPGLT---------------PSGISGNGKRAHGQRPVMVARAMTNLHRQDV 263 + + WPG+ P G G R GQR +R+ N HR V Sbjct: 134 ATLPI-KLWPGMKIGQLCLFRLTSPAEHPYGSERYGSRYQGQRGPTASRSFLNFHRTQV 191
>DCD_STRAW (Q82EZ9) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP| deaminase) Length = 191 Score = 33.5 bits (75), Expect = 0.51 Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 15/119 (12%) Frame = -1 Query: 574 LHPSEFISEK*RRIHRFKDEAPQTRSTKAKLRRRHQWMHPSARLLLATTSRQGAAEASGL 395 LHP EF+ + D+ K+ L R H +A + S E S L Sbjct: 74 LHPGEFVLASTYEVISLPDDLASRLEGKSSLGRLGLVTHSTAGFIDPGFSGHVTLELSNL 133 Query: 394 PQHDLLRRWPGLT---------------PSGISGNGKRAHGQRPVMVARAMTNLHRQDV 263 + + WPG+ P G G R GQR +R+ N HR V Sbjct: 134 ATLPI-KLWPGMKIGQLCMFRLSSPAEFPYGSDRYGSRYQGQRGPTASRSFLNFHRTQV 191
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 32.7 bits (73), Expect = 0.87 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +1 Query: 205 PSPCIWSPHTLNGAALEPPPRLAGVGWSWPSPPSQAVG 318 P I P L G A+ PPP L G+G P+PP G Sbjct: 1038 PGSGIPPPPALPGVAIPPPPPLPGMGVPPPAPPPPGAG 1075
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 31.2 bits (69), Expect = 2.5 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +1 Query: 199 QRPSPCIWSPHTLNGAALEPPPRLAGVGW-SWPSPP 303 Q+ C+ PH L L PPP + G G+ W PP Sbjct: 69 QKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPP 104
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 31.2 bits (69), Expect = 2.5 Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 5/108 (4%) Frame = -3 Query: 488 KTPTATPVDASFGQAAPRDDVPPRCGRSVGPPST*FAKAMAWLDALRHQRQREAGARPTA 309 K P +P A+ G P VP R GR +G S R + GARPTA Sbjct: 273 KPPLGSP-RATDGNRDPGAGVPARPGRRMGGSSGGRGGTPG-----RGPERAAPGARPTA 326 Query: 308 CDGGEGH-----DQPTPARRGGGSSAAPFSV*GDQMQGDGRCIELELR 180 DG G D P P GG G + G GR + R Sbjct: 327 PDGAPGRWDGPADGPAPGLGRGGWGV------GREAGGSGRSVRTAAR 368
>PIG2_YEAST (P40187) GSY2-interacting protein PIG2| Length = 538 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = -1 Query: 463 MHPSARL----LLATTSRQGAAEASGLPQHDLLRRWPGLTPSGISGNGKRAHGQRPVMVA 296 MHP ARL L R + LPQ +L R G+ NGK+ H P + + Sbjct: 45 MHP-ARLNSLEFLHKPRRLSNVKLHRLPQDELQRNTD--MNKGMYFNGKQVHAHHPFINS 101 Query: 295 RAMTNLHRQDVA 260 A N H QDV+ Sbjct: 102 GANFNAHHQDVS 113
>PVDG_PLAKN (P50494) Duffy receptor gamma form precursor (Erythrocyte-binding| protein) Length = 1070 Score = 30.0 bits (66), Expect = 5.7 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Frame = -3 Query: 554 IRKIEKNTSIQGRSASNTIYKSKTPTATPVD----ASFGQAAPRDDVPPRC-GRSVGPPS 390 +++ KNT ++ + + +SK P++ P++ +S G+ ++D R G S Sbjct: 504 VQEARKNTQENVKNVGSGV-ESKAPSSNPINEAVKSSSGEGKVQEDSAHRSVNEGEGKSS 562 Query: 389 T*FAKAMAWLDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSSAAPFS 234 T A + + E P A G+GHD+ PA SA P S Sbjct: 563 TNEADPGSQPGGPASRSVDEKAGVP-ALSAGQGHDKVPPAEAAATESAVPHS 613
>PALH_MAGGR (Q52E66) pH-response regulator protein palH/RIM21| Length = 829 Score = 30.0 bits (66), Expect = 5.7 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Frame = -3 Query: 593 AMRSREITSI*VHIRKIEKNT---SIQGRSASNTIYKSKTPTATPVDASFGQAAPRDDV- 426 A+R +T VH R + T + S + S TPTA S Q + Sbjct: 529 AIRYHPLTD--VHSRTTTRPTPPPQLSTERQSAVVDVSGTPTAVEDVRSHDQPSGSQSAS 586 Query: 425 --PPRCGRSVGPPST*FAKAMAWLDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGS 252 PPR +S GPP+ ++ + R +RQ A T G D P+ + + GG Sbjct: 587 PSPPRDQQSPGPPNL---VRLSREETRRERRQSLATTSRTGTRVGPDSDDPSASSQQGGE 643 Query: 251 SA 246 S+ Sbjct: 644 SS 645
>EPIPL_HUMAN (P58107) Epiplakin (450 kDa epidermal antigen)| Length = 5065 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 362 LDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSS 249 L A+ + + GARP D G +P PA RG G S Sbjct: 4682 LTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGDGDS 4719 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 362 LDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSS 249 L A+ + + GARP D G +P PA RG G S Sbjct: 4148 LTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGDGDS 4185 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 362 LDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSS 249 L A+ + + GARP D G +P PA RG G S Sbjct: 3614 LTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGDGDS 3651 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 362 LDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSS 249 L A+ + + GARP D G +P PA RG G S Sbjct: 3080 LTAIIEEAEEAPGARPQLQDAWRGPREPGPAGRGDGDS 3117 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 362 LDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSS 249 L A+ + + GARP D G +P PA RG G S Sbjct: 2546 LTAIIEEAEEAPGARPQLQDARRGPREPGPAGRGDGDS 2583
>VE2_HPV50 (Q80930) Regulatory protein E2| Length = 396 Score = 29.6 bits (65), Expect = 7.4 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%) Frame = -3 Query: 599 HTAMRSREITSI*VHIRKIEKNTSIQGRSASNT-IYKSKTPTATPVDASFGQAAPRDDVP 423 H + +E+T V+ + + + ++ G+S T I+K+KT ++ +S P D+ P Sbjct: 161 HNGLYFKEVTGDSVYFKLFQPDATVYGKSGQWTVIFKNKTIHSSVTSSSRSAFGPADEQP 220 Query: 422 PRCGRSVGPPST*FAKAMAWLDALRHQRQREAGARPTACDGGE 294 PST + K+ Q++R +P A E Sbjct: 221 --------GPSTSYDKS---------QQERSGSGQPKALQDTE 246
>ZDHC5_PONPY (Q5R838) Probable palmitoyltransferase ZDHHC5 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 5) (DHHC-5) Length = 715 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Frame = -3 Query: 530 SIQGRSASNTIYKSKTPTATPVDASFGQAAPRDDVPPRCGRSVGP-PST*FAKAMAWLDA 354 SI+ ++T YKS S+ D P GP P +L A Sbjct: 445 SIRSEGTTSTSYKSLANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSA 504 Query: 353 LRHQRQREAGARPTACDGGEGHDQPTPAR 267 R +QREA P G H +P+P R Sbjct: 505 -RLAQQREAERHPRLVPTGPTHREPSPVR 532
>ZDHC5_PANTR (Q2THX1) Probable palmitoyltransferase ZDHHC5 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 5) (DHHC-5) Length = 715 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Frame = -3 Query: 530 SIQGRSASNTIYKSKTPTATPVDASFGQAAPRDDVPPRCGRSVGP-PST*FAKAMAWLDA 354 SI+ ++T YKS S+ D P GP P +L A Sbjct: 445 SIRSEGTTSTSYKSLANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSA 504 Query: 353 LRHQRQREAGARPTACDGGEGHDQPTPAR 267 R +QREA P G H +P+P R Sbjct: 505 -RLAQQREAERHPRLVPTGPTHREPSPVR 532
>ZDHC5_MOUSE (Q8VDZ4) Probable palmitoyltransferase ZDHHC5 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 5) (DHHC-5) Length = 715 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Frame = -3 Query: 530 SIQGRSASNTIYKSKTPTATPVDASFGQAAPRDDVPPRCGRSVGP-PST*FAKAMAWLDA 354 SI+ ++T YKS S+ D P GP P +L A Sbjct: 445 SIRSEGTTSTSYKSLANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSA 504 Query: 353 LRHQRQREAGARPTACDGGEGHDQPTPAR 267 R +QREA P G H +P+P R Sbjct: 505 -RLAQQREAERHPRLLPTGPPHREPSPVR 532
>ZDHC5_HUMAN (Q9C0B5) Probable palmitoyltransferase ZDHHC5 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 5) (DHHC-5) (Zinc finger protein 375) Length = 715 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 1/89 (1%) Frame = -3 Query: 530 SIQGRSASNTIYKSKTPTATPVDASFGQAAPRDDVPPRCGRSVGP-PST*FAKAMAWLDA 354 SI+ ++T YKS S+ D P GP P +L A Sbjct: 445 SIRSEGTTSTSYKSLANQTRNGSLSYDSLLTPSDSPDFESVQAGPEPDPPLGYTSPFLSA 504 Query: 353 LRHQRQREAGARPTACDGGEGHDQPTPAR 267 R +QREA P G H +P+P R Sbjct: 505 -RLAQQREAERHPRLVPTGPTHREPSPVR 532
>IR09_HCMVA (P16807) Hypothetical protein IRL9 (TRL9)| Length = 143 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -3 Query: 377 KAMAWLDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSSAAPFSV*GDQMQGDGR 201 ++ A +D R R+ +A RPT C G ++ PA GG +S G GDGR Sbjct: 32 RSHAAVDRPRRTRRGDASPRPTGCGG----ERRAPAIPGGATSPHMSRRSGRGPVGDGR 86
>EBI_DROME (Q95RJ9) F-box-like/WD repeat protein ebi| Length = 700 Score = 29.3 bits (64), Expect = 9.7 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -3 Query: 548 KIEKNTSIQGRSASNTIYKSKTPTATPVDAS 456 KIE T + G + N I S T T+TP D S Sbjct: 125 KIEPGTGVAGSAGGNKIAGSTTGTSTPTDQS 155
>PKN1_HUMAN (Q16512) Serine/threonine-protein kinase N1 (EC 2.7.11.13) (Protein| kinase C-like 1) (Protein-kinase C-related kinase 1) (Protein kinase C-like PKN) (Serine-threonine protein kinase N) (Protein kinase PKN-alpha) Length = 942 Score = 29.3 bits (64), Expect = 9.7 Identities = 24/93 (25%), Positives = 41/93 (44%) Frame = -3 Query: 413 GRSVGPPST*FAKAMAWLDALRHQRQREAGARPTACDGGEGHDQPTPARRGGGSSAAPFS 234 GRS+GP + LD L HQ+ +E A D HD P GG + +A Sbjct: 67 GRSLGPVELLLRGSSRRLDLL-HQQLQELHAHVVLPDPAATHDGPQSPGAGGPTCSATNL 125 Query: 233 V*GDQMQGDGRCIELELRIQSDRLTSIHSHTKG 135 ++ G + + +EL+++ I +++ G Sbjct: 126 ---SRVAGLEKQLAIELKVKQGAENMIQTYSNG 155
>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2| Length = 954 Score = 29.3 bits (64), Expect = 9.7 Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 10/96 (10%) Frame = -3 Query: 518 RSASNTIYKSKTPTATPVDASFGQAAPRDDVPPRCGRSVGPPS----------T*FAKAM 369 +SAS+TI + P A + A F + + D P R PS T A A Sbjct: 32 KSASSTI---EPPVARRLKAEFAKDNAKGDSKPVQQRRPAAPSAPASTSSSAPTPAAPAR 88 Query: 368 AWLDALRHQRQREAGARPTACDGGEGHDQPTPARRG 261 A HQ+ GA GG PTP R G Sbjct: 89 QASPASAHQQAPTPGAPTPRPQGGARPGMPTPGRHG 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,552,494 Number of Sequences: 219361 Number of extensions: 1926184 Number of successful extensions: 5956 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5945 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
