Clone Information

BLAST Search Result

Clone Name	rbaal0b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|BX548009.4\| Zebrafish DNA sequence from clone CH211-237K17 i...	48	0.035
2	emb\|BX000980.13\| Zebrafish DNA sequence from clone CH211-136D9, ...	44	0.54
3	emb\|BX571792.9\| Zebrafish DNA sequence from clone CH211-177D9 in...	44	0.54
4	ref\|XM_522511.1\| PREDICTED: Pan troglodytes similar to Grp94 nei...	42	2.1
5	gb\|BC064342.1\| Homo sapiens hypothetical LOC253724, mRNA (cDNA c...	42	2.1
6	emb\|CT009717.9\| Mouse DNA sequence from clone RP23-216H9 on chro...	42	2.1
7	emb\|BX322575.19\| Zebrafish DNA sequence from clone CH211-283E2 i...	42	2.1
8	ref\|XM_946104.1\| PREDICTED: Homo sapiens hypothetical LOC253724,...	42	2.1
9	ref\|XM_942551.1\| PREDICTED: Homo sapiens hypothetical LOC253724,...	42	2.1
10	ref\|XM_932835.1\| PREDICTED: Homo sapiens hypothetical LOC253724,...	42	2.1
11	ref\|XM_172874.5\| PREDICTED: Homo sapiens hypothetical LOC253724,...	42	2.1
12	gb\|AC159477.9\| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cance...	42	2.1
13	gb\|AC012555.27\| Homo sapiens 12 RP11-650K20 (Roswell Park Cancer...	42	2.1
14	emb\|AL772310.27\| Mouse DNA sequence from clone RP23-34B24 on chr...	42	2.1
15	emb\|CR354403.16\| Zebrafish DNA sequence from clone CH211-196E8 i...	42	2.1
16	gb\|AC162523.9\| Mus musculus chromosome 8, clone RP23-370L21, com...	40	8.4
17	gb\|BT016872.1\| Zea mays clone Contig705 mRNA sequence	40	8.4
18	gb\|AY327575.1\| Delftia acidovorans strain MC1 carboxymuconolacto...	40	8.4
19	gb\|AY456696.1\| Arthrobacter aurescens strain TC1 plasmid pAA1 at...	40	8.4
20	gb\|AC125265.8\| Mus musculus chromosome 6, clone RP24-444K24, com...	40	8.4
21	gb\|AC124600.5\| Mus musculus BAC clone RP23-25H7 from chromosome ...	40	8.4
22	gb\|AC122903.4\| Mus musculus BAC clone RP23-44N5 from chromosome ...	40	8.4
23	gb\|AC124466.3\| Mus musculus BAC clone RP24-160P1 from chromosome...	40	8.4
24	gb\|AC129601.4\| Mus musculus BAC clone RP23-444N1 from chromosome...	40	8.4
25	gb\|AC125277.1\| Mus musculus BAC clone RP24-554P24 from 13, compl...	40	8.4
26	gb\|DQ448808.1\| Variovorax sp. MD2 plasmid pADP1::Tn5 insertion s...	40	8.4
27	gb\|DQ448807.1\| Variovorax sp. MD1 plasmid pADP1::Tn5 insertion s...	40	8.4
28	emb\|AL139125.18\| Human DNA sequence from clone RP5-1031D4 on chr...	40	8.4
29	emb\|AL050334.12\|HSJ179M22 Human DNA sequence from clone RP1-179M...	40	8.4
30	gb\|U66917.2\| Pseudomonas sp. ADP atrazine catabolic plasmid pADP...	40	8.4
31	gb\|AC145127.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
32	emb\|AL662880.6\| Zebrafish DNA sequence from clone BUSM1-182N13 i...	40	8.4
33	emb\|AJ628859.1\| Sphingomonas herbicidovorans tnpA gene for trans...	40	8.4
34	gb\|AC159505.7\| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cance...	40	8.4
35	emb\|AJ006307.2\|RSP6307 Ralstonia sp. JS705 clcR, clcA, mcbF, mcb...	40	8.4
36	emb\|BX936331.6\| Zebrafish DNA sequence from clone CH211-1C10 in ...	40	8.4
37	emb\|BX890620.9\| Zebrafish DNA sequence from clone DKEY-48C14 in ...	40	8.4
38	gb\|AC079594.14\| Homo sapiens 3 BAC RP11-432B6 (Roswell Park Canc...	40	8.4
39	emb\|BX572620.15\| Zebrafish DNA sequence from clone CH211-202G13 ...	40	8.4
40	emb\|CR354594.13\| Zebrafish DNA sequence from clone DKEY-173F1 in...	40	8.4
41	gb\|AC021010.8\| Homo sapiens, clone RP11-69D2, complete sequence	40	8.4
42	gb\|AC023934.6\| Homo sapiens chromosome 17, clone RP11-618P13, co...	40	8.4
43	emb\|AL133045.1\|HSM801315 Homo sapiens mRNA; cDNA DKFZp434A2115 (...	40	8.4
44	gb\|AC060234.11\| Homo sapiens chromosome 10 clone RP11-523O18, co...	40	8.4
45	gb\|AC099400.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
46	gb\|AY731710.1\| Comamonas sp. CNB-1 hydroxylaminochlorobenzene mu...	40	8.4
47	gb\|AC040918.7\| Homo sapiens chromosome 15, clone RP11-684B21, co...	40	8.4
48	ref\|NM_020800.1\| Homo sapiens intraflagellar transport 80 homolo...	40	8.4
49	dbj\|AK169946.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	8.4
50	gb\|AC159278.3\| Mus musculus BAC clone RP23-361M12 from chromosom...	40	8.4
51	emb\|BX890609.7\| Zebrafish DNA sequence from clone DKEY-56E5, com...	40	8.4
52	emb\|AL929441.37\| Mouse DNA sequence from clone RP23-418E20 on ch...	40	8.4
53	gb\|U41017.1\| Caenorhabditis elegans cosmid T26C11, complete sequ...	40	8.4
54	gb\|AC022731.4\|AC022731 Homo sapiens chromosome 8, clone RP11-382...	40	8.4
55	ref\|NM_075938.2\| Caenorhabditis elegans T26C11.4 (T26C11.4) mRNA...	40	8.4
56	dbj\|AK043699.1\| Mus musculus 10 days neonate cortex cDNA, RIKEN ...	40	8.4
57	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
58	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
59	gb\|AF086815.2\|AF086815 Acidovorax avenae subsp. citrulli s-triaz...	40	8.4
60	gb\|AF342828.1\|AF342827S2 Pseudomonas huttiensis YahE/YlbF-like p...	40	8.4
61	gb\|AF028594.1\|AF028594 Pseudomonas pseudoalcaligenes hydroxylami...	40	8.4
62	emb\|BX649639.4\| Zebrafish DNA sequence from clone CH211-102G22 i...	40	8.4
63	emb\|AL928554.24\| Mouse DNA sequence from clone RP23-131H7 on chr...	40	8.4
64	dbj\|BS000060.1\| Pan troglodytes chromosome 22 clone:RP43-086L15,...	40	8.4
65	dbj\|AP005657.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
66	emb\|BX897690.13\| Zebrafish DNA sequence from clone CH211-197O9 i...	40	8.4
67	gb\|AC153902.4\| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer...	40	8.4
68	gb\|M37839.2\|KPNMIR1 Klebsiella pneumoniae plasmid pMG230 beta-la...	40	8.4
69	dbj\|AP001885.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	8.4
70	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
71	gb\|AC133180.3\| Mus musculus BAC clone RP24-137D2 from chromosome...	40	8.4
72	emb\|AL929503.4\| Zebrafish DNA sequence from clone CH211-158I6, c...	40	8.4
73	gb\|AC163040.5\| Mus musculus BAC clone RP23-71C23 from chromosome...	40	8.4
74	gb\|AC168310.6\| Mus musculus chromosome 8, clone RP24-345M22, com...	40	8.4
75	emb\|AL773523.4\| Mouse DNA sequence from clone RP23-186B18 on chr...	40	8.4
76	gb\|AC163685.4\| Mus musculus BAC clone RP23-4M16 from chromosome ...	40	8.4
77	dbj\|AB037795.1\| Homo sapiens mRNA for KIAA1374 protein, partial cds	40	8.4

>emb|BX548009.4| Zebrafish DNA sequence from clone CH211-237K17 in linkage group 3,
             complete sequence
          Length = 128639

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 139   tttgtgtgtgagtgtatggatgtt 162
             ||||||||||||||||||||||||
Sbjct: 10511 tttgtgtgtgagtgtatggatgtt 10488

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>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence
          Length = 169191

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 141    tgtgtgtgagtgtatggatgtt 162
              ||||||||||||||||||||||
Sbjct: 165913 tgtgtgtgagtgtatggatgtt 165892

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>emb|BX571792.9| Zebrafish DNA sequence from clone CH211-177D9 in linkage group 12,
              complete sequence
          Length = 141671

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 141    tgtgtgtgagtgtatggatgtt 162
              ||||||||||||||||||||||
Sbjct: 130423 tgtgtgtgagtgtatggatgtt 130444

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>ref|XM_522511.1| PREDICTED: Pan troglodytes similar to Grp94 neighboring nucleotidase
            variant 3 (LOC467111), mRNA
          Length = 3744

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 546  ttttctgatatgaactcagat 566
            |||||||||||||||||||||
Sbjct: 3629 ttttctgatatgaactcagat 3609

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>gb|BC064342.1| Homo sapiens hypothetical LOC253724, mRNA (cDNA clone IMAGE:4373107),
            partial cds
          Length = 1281

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 546  ttttctgatatgaactcagat 566
            |||||||||||||||||||||
Sbjct: 1145 ttttctgatatgaactcagat 1125

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>emb|CT009717.9| Mouse DNA sequence from clone RP23-216H9 on chromosome 13, complete
             sequence
          Length = 220233

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    tgtagataacagaaaatggaa 96
             |||||||||||||||||||||
Sbjct: 35767 tgtagataacagaaaatggaa 35747

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>emb|BX322575.19| Zebrafish DNA sequence from clone CH211-283E2 in linkage group 9,
            complete sequence
          Length = 149874

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 142  gtgtgtgagtgtatggatgtt 162
            |||||||||||||||||||||
Sbjct: 7128 gtgtgtgagtgtatggatgtt 7148

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>ref|XM_946104.1| PREDICTED: Homo sapiens hypothetical LOC253724, transcript variant 4
            (LOC253724), mRNA
          Length = 1255

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 546  ttttctgatatgaactcagat 566
            |||||||||||||||||||||
Sbjct: 1139 ttttctgatatgaactcagat 1119

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>ref|XM_942551.1| PREDICTED: Homo sapiens hypothetical LOC253724, transcript variant 3
            (LOC253724), mRNA
          Length = 4355

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 546  ttttctgatatgaactcagat 566
            |||||||||||||||||||||
Sbjct: 4239 ttttctgatatgaactcagat 4219

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>ref|XM_932835.1| PREDICTED: Homo sapiens hypothetical LOC253724, transcript variant 2
            (LOC253724), mRNA
          Length = 1255

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 546  ttttctgatatgaactcagat 566
            |||||||||||||||||||||
Sbjct: 1139 ttttctgatatgaactcagat 1119

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>ref|XM_172874.5| PREDICTED: Homo sapiens hypothetical LOC253724, transcript variant 1
            (LOC253724), mRNA
          Length = 4322

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 546  ttttctgatatgaactcagat 566
            |||||||||||||||||||||
Sbjct: 4206 ttttctgatatgaactcagat 4186

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>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 222553

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   tgtgtgtgagtgtatggatgt 161
             |||||||||||||||||||||
Sbjct: 68323 tgtgtgtgagtgtatggatgt 68343



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   tgtgtgtgagtgtatggatgt 161
             |||||||||||||||||||||
Sbjct: 68283 tgtgtgtgagtgtatggatgt 68303

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>gb|AC012555.27| Homo sapiens 12 RP11-650K20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95597

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 546   ttttctgatatgaactcagat 566
             |||||||||||||||||||||
Sbjct: 23453 ttttctgatatgaactcagat 23433

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>emb|AL772310.27| Mouse DNA sequence from clone RP23-34B24 on chromosome 4, complete
             sequence
          Length = 211901

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   tgtgtgtgagtgtatggatgt 161
             |||||||||||||||||||||
Sbjct: 92524 tgtgtgtgagtgtatggatgt 92544

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>emb|CR354403.16| Zebrafish DNA sequence from clone CH211-196E8 in linkage group 9,
             complete sequence
          Length = 167419

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 142   gtgtgtgagtgtatggatgtt 162
             |||||||||||||||||||||
Sbjct: 65296 gtgtgtgagtgtatggatgtt 65276

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>gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, complete sequence
          Length = 193777

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   cctttgtgtgtgagtgtatg 156
             ||||||||||||||||||||
Sbjct: 14568 cctttgtgtgtgagtgtatg 14587

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>gb|BT016872.1| Zea mays clone Contig705 mRNA sequence
          Length = 1623

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 246  cgcgctggagccaccgccacgtct 269
            |||||||||||| |||||||||||
Sbjct: 1265 cgcgctggagccgccgccacgtct 1242

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>gb|AY327575.1| Delftia acidovorans strain MC1 carboxymuconolactone decarboxylase,
             glutathione-regulated potassium/proton antiporter,
             bacterioferritin, LysR type regulator, and dihydroxy-acid
             dehydratase genes, complete cds; IS91-like insertion
             sequence, complete sequence;
             S-2,4-dichlorophenoxypropionate/alpha-ketoglutarate
             dioxygenase (sdpA) gene, complete cds; IS91-like insertion
             sequence, and Tn501-like mercury resistance transposon,
             complete sequence; aromatic compound MFS transporter, and
             R-2,4-dichlorophenoxypropionate/alpha-ketoglutarate
             dioxygenase (rdpA) genes, complete cds
          Length = 25768

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 22058 cgccgcgctggtgccaccgccacg 22081



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 9015 cgccgcgctggtgccaccgccacg 9038

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>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic
             region, partial sequence
          Length = 161264

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 30089 cgccgcgctggtgccaccgccacg 30112



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 22287 cgccgcgctggtgccaccgccacg 22310

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>gb|AC125265.8| Mus musculus chromosome 6, clone RP24-444K24, complete sequence
          Length = 156056

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     aacagaaaatggaaggacta 102
              ||||||||||||||||||||
Sbjct: 119694 aacagaaaatggaaggacta 119675

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>gb|AC124600.5| Mus musculus BAC clone RP23-25H7 from chromosome 16, complete sequence
          Length = 225102

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 536   tcttctctatttttctgatatgaa 559
             ||||||||||||||||||| ||||
Sbjct: 45716 tcttctctatttttctgatctgaa 45739

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>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 535  ttcttctctatttttctgat 554
            ||||||||||||||||||||
Sbjct: 4494 ttcttctctatttttctgat 4513

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>gb|AC124466.3| Mus musculus BAC clone RP24-160P1 from chromosome 18, complete sequence
          Length = 169529

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   tgtgtgtgagtgtatggatg 160
             ||||||||||||||||||||
Sbjct: 40160 tgtgtgtgagtgtatggatg 40179

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>gb|AC129601.4| Mus musculus BAC clone RP23-444N1 from chromosome 16, complete sequence
          Length = 173054

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 536   tcttctctatttttctgatatgaa 559
             ||||||||||||||||||| ||||
Sbjct: 20846 tcttctctatttttctgatctgaa 20823

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>gb|AC125277.1| Mus musculus BAC clone RP24-554P24 from 13, complete sequence
          Length = 141866

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   cctttgtgtgtgagtgtatg 156
             ||||||||||||||||||||
Sbjct: 35969 cctttgtgtgtgagtgtatg 35950

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>gb|DQ448808.1| Variovorax sp. MD2 plasmid pADP1::Tn5 insertion sequence ISPps1,
            complete sequence; dihydrolipoamide dehydrogenase
            like-protein gene, complete cds; and insertion sequence
            IS1071, complete sequence
          Length = 11224

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 4294 cgccgcgctggtgccaccgccacg 4271

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>gb|DQ448807.1| Variovorax sp. MD1 plasmid pADP1::Tn5 insertion sequence ISPps1,
            complete sequence; dihydrolipoamide dehydrogenase
            like-protein gene, complete cds; and insertion sequence
            IS1071, complete sequence
          Length = 11224

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 4294 cgccgcgctggtgccaccgccacg 4271

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>emb|AL139125.18| Human DNA sequence from clone RP5-1031D4 on chromosome 10 Contains the
             5' end of the gene for a novel protein (KIAA1617), a novel
             gene and a CpG island, complete sequence
          Length = 124437

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   tgtgtgtgagtgtatggatg 160
             ||||||||||||||||||||
Sbjct: 10707 tgtgtgtgagtgtatggatg 10726

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>emb|AL050334.12|HSJ179M22 Human DNA sequence from clone RP1-179M22 on chromosome 6q23.3-25.1,
             complete sequence
          Length = 72306

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aagaatgggaaagagataag 127
             ||||||||||||||||||||
Sbjct: 10736 aagaatgggaaagagataag 10755

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>gb|U66917.2| Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete
             sequence
          Length = 108845

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 73410 cgccgcgctggtgccaccgccacg 73387



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 49289 cgccgcgctggtgccaccgccacg 49266



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 37550 cgccgcgctggtgccaccgccacg 37527



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 28027 cgccgcgctggtgccaccgccacg 28004

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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    cgtcgtcgcgaggagcagcc 447
              ||||||||||||||||||||
Sbjct: 187631 cgtcgtcgcgaggagcagcc 187650

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>emb|AL662880.6| Zebrafish DNA sequence from clone BUSM1-182N13 in linkage group 23
             Contains a novel gene similar to PHLDA3, part of two novel
             genes, a gene for a novel troponin I, the tnnt2 gene for
             cardiac troponin T2 and three CpG islands, complete
             sequence
          Length = 103409

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   tttgtgtgtgagtgtatggatgtt 162
             |||||||||| |||||||||||||
Sbjct: 63188 tttgtgtgtgtgtgtatggatgtt 63211

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>emb|AJ628859.1| Sphingomonas herbicidovorans tnpA gene for transposase and rdpA
           gene for
           (R)-2-(2,4-dichlorophenoxy)propionate,2-oxoglutarate
           dioxygenase
          Length = 2693

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 243 cgccgcgctggagccaccgccacg 266
           ||||||||||| ||||||||||||
Sbjct: 861 cgccgcgctggtgccaccgccacg 884

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>gb|AC159505.7| Mus musculus 6 BAC RP23-81D20 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 254457

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aacagaaaatggaaggacta 102
             ||||||||||||||||||||
Sbjct: 47617 aacagaaaatggaaggacta 47636

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>emb|AJ006307.2|RSP6307 Ralstonia sp. JS705 clcR, clcA, mcbF, mcbAa, mcbAb, mcbAc, mcbAd and
            mcbB genes
          Length = 12483

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 9305 cgccgcgctggtgccaccgccacg 9328



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 2920 cgccgcgctggtgccaccgccacg 2943

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>emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in linkage group 3,
             complete sequence
          Length = 163806

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ttctgtagataacagaaaat 92
             ||||||||||||||||||||
Sbjct: 85090 ttctgtagataacagaaaat 85109

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>emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in linkage group 14,
              complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    tgtgtgagtgtatggatgtt 162
              ||||||||||||||||||||
Sbjct: 134527 tgtgtgagtgtatggatgtt 134508

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>gb|AC079594.14| Homo sapiens 3 BAC RP11-432B6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 124701

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   ctatccctttgtgtgtgagtgtat 155
             ||||||||||||||||| ||||||
Sbjct: 24728 ctatccctttgtgtgtgtgtgtat 24751

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>emb|BX572620.15| Zebrafish DNA sequence from clone CH211-202G13 in linkage group 3,
             complete sequence
          Length = 199512

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ttctgtagataacagaaaat 92
             ||||||||||||||||||||
Sbjct: 76254 ttctgtagataacagaaaat 76273

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>emb|CR354594.13| Zebrafish DNA sequence from clone DKEY-173F1 in linkage group 13,
             complete sequence
          Length = 196408

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   tttgtgtgtgagtgtatggatgtt 162
             |||||||||| |||||||||||||
Sbjct: 67860 tttgtgtgtgtgtgtatggatgtt 67883

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>gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence
          Length = 187599

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gtgtgtgagtgtatggatgt 161
             ||||||||||||||||||||
Sbjct: 50435 gtgtgtgagtgtatggatgt 50416

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>gb|AC023934.6| Homo sapiens chromosome 17, clone RP11-618P13, complete sequence
          Length = 157069

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gtgtgtgagtgtatggatgt 161
             ||||||||||||||||||||
Sbjct: 96529 gtgtgtgagtgtatggatgt 96510

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>emb|AL133045.1|HSM801315 Homo sapiens mRNA; cDNA DKFZp434A2115 (from clone DKFZp434A2115)
          Length = 2166

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 132  ctatccctttgtgtgtgagtgtat 155
            ||||||||||||||||| ||||||
Sbjct: 1850 ctatccctttgtgtgtgtgtgtat 1827

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>gb|AC060234.11| Homo sapiens chromosome 10 clone RP11-523O18, complete sequence
          Length = 170073

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   tttctgatatgaactcagat 566
             ||||||||||||||||||||
Sbjct: 74334 tttctgatatgaactcagat 74353

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>gb|AC099400.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096E22, complete sequence
          Length = 133846

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   cgtcgtcgcgaggagcagcc 447
             ||||||||||||||||||||
Sbjct: 37294 cgtcgtcgcgaggagcagcc 37313

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>gb|AY731710.1| Comamonas sp. CNB-1 hydroxylaminochlorobenzene mutase, putative
            flavin-binding monooxygenase, chloronitrobenzene
            nitroreductase, putative 2-hydroxymuconic semialdehyde
            hydrolase, and putative 2-keto-4-pentenoate hydratase
            genes, complete cds
          Length = 6365

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 6312 cgccgcgctggtgccaccgccacg 6335



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 998  cgccgcgctggtgccaccgccacg 1021

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>gb|AC040918.7| Homo sapiens chromosome 15, clone RP11-684B21, complete sequence
          Length = 175919

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ttaaagtgttaaaatagtaa 20
             ||||||||||||||||||||
Sbjct: 77572 ttaaagtgttaaaatagtaa 77591

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>ref|NM_020800.1| Homo sapiens intraflagellar transport 80 homolog (Chlamydomonas)
            (IFT80), mRNA
          Length = 4314

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 132  ctatccctttgtgtgtgagtgtat 155
            ||||||||||||||||| ||||||
Sbjct: 4011 ctatccctttgtgtgtgtgtgtat 3988

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>dbj|AK169946.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630005C21
            product:RAB14, member RAS oncogene family, full insert
            sequence
          Length = 5004

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 595  gtatgcaggagacaaattat 614
            ||||||||||||||||||||
Sbjct: 2322 gtatgcaggagacaaattat 2341

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>gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosome 1, complete sequence
          Length = 180181

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   ttcttctctatttttctgat 554
             ||||||||||||||||||||
Sbjct: 54577 ttcttctctatttttctgat 54558

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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   tttgtgtgtgagtgtatggatgtt 162
             |||||||||| |||||||||||||
Sbjct: 26324 tttgtgtgtgtgtgtatggatgtt 26347

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>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete
             sequence
          Length = 202920

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   gtgtgtgagtgtatggatgt 161
             ||||||||||||||||||||
Sbjct: 96456 gtgtgtgagtgtatggatgt 96437

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>gb|U41017.1| Caenorhabditis elegans cosmid T26C11, complete sequence
          Length = 36635

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 539  tctctatttttctgatatgaactc 562
            ||||||||||| ||||||||||||
Sbjct: 6628 tctctatttttttgatatgaactc 6651

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>gb|AC022731.4|AC022731 Homo sapiens chromosome 8, clone RP11-382J12, complete sequence
          Length = 163997

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    tttttctgatatgaactcag 564
              ||||||||||||||||||||
Sbjct: 141832 tttttctgatatgaactcag 141851

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>ref|NM_075938.2| Caenorhabditis elegans T26C11.4 (T26C11.4) mRNA, complete cds
          Length = 1991

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 539  tctctatttttctgatatgaactc 562
            ||||||||||| ||||||||||||
Sbjct: 1187 tctctatttttttgatatgaactc 1164

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>dbj|AK043699.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830021G03 product:RAB14, member RAS
            oncogene family, full insert sequence
          Length = 4366

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 595  gtatgcaggagacaaattat 614
            ||||||||||||||||||||
Sbjct: 2339 gtatgcaggagacaaattat 2358

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    cgtcgtcgcgaggagcagcc 447
              ||||||||||||||||||||
Sbjct: 187631 cgtcgtcgcgaggagcagcc 187650

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    cgcgctggagccaccgccac 265
              ||||||||||||||||||||
Sbjct: 799482 cgcgctggagccaccgccac 799463

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>gb|AF086815.2|AF086815 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region
          Length = 24123

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   cgccgcgctggagccaccgccacg 266
             ||||||||||| ||||||||||||
Sbjct: 22029 cgccgcgctggtgccaccgccacg 22052

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>gb|AF342828.1|AF342827S2 Pseudomonas huttiensis YahE/YlbF-like protein (yahE/ylbF-like) gene,
            partial cds; insertion sequence ISPps1 putative
            transposase (tnpA) gene, complete cds; and putative
            dehydrogenase gene, partial cds
          Length = 3263

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 1159 cgccgcgctggtgccaccgccacg 1136

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>gb|AF028594.1|AF028594 Pseudomonas pseudoalcaligenes hydroxylaminobenzene mutase (habA) and
            (habB) genes, and Tn5501 resolvase (tnpR) gene, complete
            cds; and Tn5501 transposase (tnpA) gene, partial cds
          Length = 8134

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  cgccgcgctggagccaccgccacg 266
            ||||||||||| ||||||||||||
Sbjct: 1779 cgccgcgctggtgccaccgccacg 1756

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>emb|BX649639.4| Zebrafish DNA sequence from clone CH211-102G22 in linkage group 22,
             complete sequence
          Length = 169981

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 139   tttgtgtgtgagtgtatggatgtt 162
             |||||||||| |||||||||||||
Sbjct: 63632 tttgtgtgtgtgtgtatggatgtt 63655

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>emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chromosome 1, complete
              sequence
          Length = 195568

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    ttcttctctatttttctgat 554
              ||||||||||||||||||||
Sbjct: 139213 ttcttctctatttttctgat 139232

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>dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15, map 22, complete
             sequences
          Length = 159919

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   tatccctttgtgtgtgagtgtatg 156
             |||||||||||||||| |||||||
Sbjct: 88636 tatccctttgtgtgtgtgtgtatg 88613

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>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0427G12
          Length = 185545

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   cgcgctggagccaccgccac 265
             ||||||||||||||||||||
Sbjct: 98702 cgcgctggagccaccgccac 98683

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>emb|BX897690.13| Zebrafish DNA sequence from clone CH211-197O9 in linkage group 20,
             complete sequence
          Length = 128296

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tgtgtgagtgtatggatgtt 162
             ||||||||||||||||||||
Sbjct: 91876 tgtgtgagtgtatggatgtt 91895

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>gb|AC153902.4| Mus musculus 6 BAC RP23-5K15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 208717

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    aacagaaaatggaaggacta 102
             ||||||||||||||||||||
Sbjct: 36810 aacagaaaatggaaggacta 36791

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>gb|M37839.2|KPNMIR1 Klebsiella pneumoniae plasmid pMG230 beta-lactamase (MIR-1) gene,
           complete cds
          Length = 2310

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 243 cgccgcgctggagccaccgccacg 266
           ||||||||||| ||||||||||||
Sbjct: 123 cgccgcgctggtgccaccgccacg 146

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>dbj|AP001885.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-157K17, complete
             sequence
          Length = 173052

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   tctatttttctgatatgaac 560
             ||||||||||||||||||||
Sbjct: 13410 tctatttttctgatatgaac 13391

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    cgtcgtcgcgaggagcagcc 447
              ||||||||||||||||||||
Sbjct: 187629 cgtcgtcgcgaggagcagcc 187648

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>gb|AC133180.3| Mus musculus BAC clone RP24-137D2 from chromosome 12, complete
            sequence
          Length = 123991

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  tattcttctctatttttctg 552
            ||||||||||||||||||||
Sbjct: 7762 tattcttctctatttttctg 7781

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>emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, complete sequence
          Length = 174012

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tgtgtgagtgtatggatgtt 162
             ||||||||||||||||||||
Sbjct: 76023 tgtgtgagtgtatggatgtt 76042

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>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence
          Length = 235086

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 533    tattcttctctatttttctg 552
              ||||||||||||||||||||
Sbjct: 124638 tattcttctctatttttctg 124619

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>gb|AC168310.6| Mus musculus chromosome 8, clone RP24-345M22, complete sequence
          Length = 178580

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    cctttgtgtgtgagtgtatg 156
              ||||||||||||||||||||
Sbjct: 142423 cctttgtgtgtgagtgtatg 142404

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>emb|AL773523.4| Mouse DNA sequence from clone RP23-186B18 on chromosome 2, complete
             sequence
          Length = 198403

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   gtatgcaggagacaaattat 614
             ||||||||||||||||||||
Sbjct: 42739 gtatgcaggagacaaattat 42720

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>gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome 13, complete sequence
          Length = 242910

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   cctttgtgtgtgagtgtatg 156
             ||||||||||||||||||||
Sbjct: 89757 cctttgtgtgtgagtgtatg 89738

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>dbj|AB037795.1| Homo sapiens mRNA for KIAA1374 protein, partial cds
          Length = 4044

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 132  ctatccctttgtgtgtgagtgtat 155
            ||||||||||||||||| ||||||
Sbjct: 3755 ctatccctttgtgtgtgtgtgtat 3732


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,001,668
Number of Sequences: 3902068
Number of extensions: 5001668
Number of successful extensions: 110703
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110452
Number of HSP's gapped (non-prelim): 251
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result