ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21d17 |
|---|---|
| Clone Library Name | barley_pub |
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 37.7 bits (86), Expect = 0.033 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Frame = -2 Query: 623 NGGIHKLRVLAEGDDWGTFLK-AVASLFCVKAMLHFQFRTLIGLALASLFIVFIVYEQCE 447 N I +LR L DD LK AV F TL+ LAL SLF + ++YE+ + Sbjct: 1070 NSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQ 1129 Query: 446 DEIDALVAMASVKIKSLVERVVRELPAVR 360 +ID + +A+ +K + ++ ++P ++ Sbjct: 1130 AQIDHYLGLANKSVKDAMAKIQAKIPGLK 1158
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 37.4 bits (85), Expect = 0.044 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = -2 Query: 509 TLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAV 363 TL+ LA +F V IVYE+ + +ID V +A + KS+VE++ +LP + Sbjct: 182 TLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGI 230
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 37.4 bits (85), Expect = 0.044 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Frame = -2 Query: 623 NGGIHKLRVLAEGDDWGTFLK-AVASLFCVKAMLHFQFRTLIGLALASLFIVFIVYEQCE 447 N I +LR L DD LK AV F TL+ LAL SLF + ++YE+ + Sbjct: 1071 NSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQ 1130 Query: 446 DEIDALVAMASVKIKSLVERVVRELPAVR 360 +ID + +A+ +K + ++ ++P ++ Sbjct: 1131 VQIDHYLGLANKSVKDAMAKIQAKIPGLK 1159
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 37.0 bits (84), Expect = 0.057 Identities = 20/49 (40%), Positives = 32/49 (65%) Frame = -2 Query: 509 TLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAV 363 TL+ LA +F V IVYE+ + +ID V +A + KS+VE++ +LP + Sbjct: 183 TLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKLPGI 231
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 37.0 bits (84), Expect = 0.057 Identities = 17/54 (31%), Positives = 34/54 (62%) Frame = -2 Query: 521 FQFRTLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAVR 360 F TL+ LAL SLF V ++YE+ + +ID + +A+ +K + ++ ++P ++ Sbjct: 1135 FNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKIPGLK 1188
>RTN1_YEAST (Q04947) Reticulon-like protein 1| Length = 295 Score = 30.4 bits (67), Expect = 5.3 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 15/95 (15%) Frame = -2 Query: 572 TFLKAVASLFCVKAMLHFQFRTLIGLALASLFIVFIVYEQCEDEIDALVA---------- 423 TF AVA K F T++ +A F + ++Y + EIDA VA Sbjct: 127 TFKTAVALFLLHKFFSWFSIWTIVFVADIFTFTLPVIYHSYKHEIDATVAQGVEISKQKT 186 Query: 422 -----MASVKIKSLVERVVRELPAVRNALVPSKAS 333 MA K K +++V +L + N LV SK + Sbjct: 187 QEFSQMACEKTKPYLDKVESKLGPISN-LVKSKTA 220
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/54 (24%), Positives = 31/54 (57%) Frame = -2 Query: 521 FQFRTLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAVR 360 F TL+ +A+ S+F + +VY + + +ID + + I ++V ++ ++P + Sbjct: 719 FNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPGAK 772
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/54 (24%), Positives = 31/54 (57%) Frame = -2 Query: 521 FQFRTLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAVR 360 F TL+ +A+ S+F + +VY + + +ID + + I ++V ++ ++P + Sbjct: 719 FNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPGAK 772
>YYBT_BACSU (P37484) Hypothetical protein yybT| Length = 659 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Frame = -2 Query: 560 AVASLFCVKAMLHFQFRTLIGLALASLFIVFIVYEQCED-----EIDALVAMASVKIKSL 396 A+ +L + ++ F F ++G L V + + + D EIDA ++ S ++K + Sbjct: 16 ALIALSIITILISFYFNWILGTVEVLLLAVILFFIKRADSLIRQEIDAYISTLSYRLKKV 75 Query: 395 VERVVRELP 369 E + E+P Sbjct: 76 GEEALMEMP 84
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 30.0 bits (66), Expect = 7.0 Identities = 12/54 (22%), Positives = 31/54 (57%) Frame = -2 Query: 521 FQFRTLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAVR 360 F TL+ +A+ S+F + +VY + + ++D + + I ++V ++ ++P + Sbjct: 720 FNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQAKIPGAK 773
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 30.0 bits (66), Expect = 7.0 Identities = 12/54 (22%), Positives = 31/54 (57%) Frame = -2 Query: 521 FQFRTLIGLALASLFIVFIVYEQCEDEIDALVAMASVKIKSLVERVVRELPAVR 360 F TL+ +A+ S+F + +VY + + ++D + + I ++V ++ ++P + Sbjct: 723 FNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQAKIPGAK 776
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RNA polymerase II subunit 1) Length = 1599 Score = 30.0 bits (66), Expect = 7.0 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 150 PKCSNV*TGVPLQSAGLHTSPKLVGASILDNCSRNRESARTEHAAAHKASNCHGQHYL*N 329 P S GVPL+ A +HT P+ V + +D + + EH A+ GQ N Sbjct: 328 PNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLRSDGQKIDLN 387 Query: 330 IRR 338 R Sbjct: 388 FNR 390 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,716,707 Number of Sequences: 219361 Number of extensions: 1835501 Number of successful extensions: 4492 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4492 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
