No.
Definition
Score (bits)
E Value
1 ref|XM_463864.1| Oryza sativa (japonica cultivar-group), mRNA
583
e-163
2 dbj|AK102050.1| Oryza sativa (japonica cultivar-group) cDNA clon...
567
e-158
3 gb|AY105861.1| Zea mays PCO080437 mRNA sequence
404
e-109
4 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
230
5e-57
5 dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D...
230
5e-57
6 dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D...
230
5e-57
7 gb|AC151526.7| Medicago truncatula clone mth2-78c9, complete seq...
50
0.009
8 gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosom...
42
2.3
9 gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome...
42
2.3
10 gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com...
42
2.3
11 gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C2...
42
2.3
12 gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ...
42
2.3
13 gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, co...
40
9.0
14 gb|AC167185.4| Mus musculus chromosome 3, clone RP23-355G8, comp...
40
9.0
15 gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Can...
40
9.0
16 gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co...
40
9.0
17 gb|AC103609.6| Mus musculus chromosome 3, clone RP23-359D10, com...
40
9.0
18 gb|AC122185.4| Mus musculus BAC clone RP23-18J13 from chromosome...
40
9.0
19 gb|AC023838.1| Arabidopsis thaliana chromosome III P1 MJM20 geno...
40
9.0
20 emb|AL109760.3|HSJ513G18 Human DNA sequence from clone RP3-513G1...
40
9.0
21 gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com...
40
9.0
22 dbj|AP000385.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
40
9.0
23 emb|Z68278.1|HSL226F1 Human DNA sequence from clone LA04NC01-226...
40
9.0
24 emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on ch...
40
9.0
25 emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chro...
40
9.0
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
complete sequence
Length = 35954743
Score = 230 bits (116), Expect = 5e-57
Identities = 158/172 (91%)
Strand = Plus / Minus
Query: 381 ttttgtgcctcggagtgtaacacgcgggcgtcgtgaagccatagtaatcccattttcacc 440
|||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 787975 ttttgtgcctcgaagtgtcacacgcggacgtcgtgaggccatagtgatcccattttcacc 787916
Query: 441 aactgttactgaaaccttacgcaaggtgccgccattgccacattttggacagaatatttt 500
||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||||
Sbjct: 787915 aactgttaccgaaaccttccgtaaggtgccaccgttgccacattttgggcaaaatatttt 787856
Query: 501 accaatctcttgggtcaccttgtagcaagcatgacacctcagaacccacctg 552
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 787855 cccaatctcttgggtcaccttatagcaagcatgacacctcagaacccacctg 787804
Score = 129 bits (65), Expect = 1e-26
Identities = 102/113 (90%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 548 acctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaatctgg 607
||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 787705 acctgtgcaac-tgacgtatttgcatgccacctggtgccaagagacggagaccaatctgc 787647
Query: 608 aggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
||||| || |||||||||||||||||||| || | ||||||||||| |||||
Sbjct: 787646 aggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 787594
Score = 125 bits (63), Expect = 2e-25
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 266 gcttgcttgacttcttcgatttaggatgcagaaccttctgtggaagttggtcttcacgta 325
||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 788586 gcttgtttgacttcttcgatttagggtgcagaaccttctggggaagctggtcttcacgca 788527
Query: 326 aaatggggttcttaatgacggcatctcttccaccttgaggcat 368
||||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 788526 aaatgggattcttagttatggcatctcttccaccttggggcat 788484
Score = 123 bits (62), Expect = 8e-25
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 123 cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 788955 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 788896
Query: 183 cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
|||||| || ||||||||||| || ||||| ||||| ||||| | |||||||||||
Sbjct: 788895 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 788836
Query: 243 agcgcccaagaaatcatc 260
| ||||||||||||||
Sbjct: 788835 gacacccaagaaatcatc 788818
>dbj|AP004867.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0036E06
Length = 137926
Score = 230 bits (116), Expect = 5e-57
Identities = 158/172 (91%)
Strand = Plus / Minus
Query: 381 ttttgtgcctcggagtgtaacacgcgggcgtcgtgaagccatagtaatcccattttcacc 440
|||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 66106 ttttgtgcctcgaagtgtcacacgcggacgtcgtgaggccatagtgatcccattttcacc 66047
Query: 441 aactgttactgaaaccttacgcaaggtgccgccattgccacattttggacagaatatttt 500
||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||||
Sbjct: 66046 aactgttaccgaaaccttccgtaaggtgccaccgttgccacattttgggcaaaatatttt 65987
Query: 501 accaatctcttgggtcaccttgtagcaagcatgacacctcagaacccacctg 552
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 65986 cccaatctcttgggtcaccttatagcaagcatgacacctcagaacccacctg 65935
Score = 129 bits (65), Expect = 1e-26
Identities = 102/113 (90%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 548 acctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaatctgg 607
||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 65836 acctgtgcaac-tgacgtatttgcatgccacctggtgccaagagacggagaccaatctgc 65778
Query: 608 aggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
||||| || |||||||||||||||||||| || | ||||||||||| |||||
Sbjct: 65777 aggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 65725
Score = 125 bits (63), Expect = 2e-25
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 266 gcttgcttgacttcttcgatttaggatgcagaaccttctgtggaagttggtcttcacgta 325
||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 66717 gcttgtttgacttcttcgatttagggtgcagaaccttctggggaagctggtcttcacgca 66658
Query: 326 aaatggggttcttaatgacggcatctcttccaccttgaggcat 368
||||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 66657 aaatgggattcttagttatggcatctcttccaccttggggcat 66615
Score = 123 bits (62), Expect = 8e-25
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 123 cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 67086 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 67027
Query: 183 cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
|||||| || ||||||||||| || ||||| ||||| ||||| | |||||||||||
Sbjct: 67026 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 66967
Query: 243 agcgcccaagaaatcatc 260
| ||||||||||||||
Sbjct: 66966 gacacccaagaaatcatc 66949
>dbj|AP004090.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1399_H05
Length = 147670
Score = 230 bits (116), Expect = 5e-57
Identities = 158/172 (91%)
Strand = Plus / Minus
Query: 381 ttttgtgcctcggagtgtaacacgcgggcgtcgtgaagccatagtaatcccattttcacc 440
|||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 144870 ttttgtgcctcgaagtgtcacacgcggacgtcgtgaggccatagtgatcccattttcacc 144811
Query: 441 aactgttactgaaaccttacgcaaggtgccgccattgccacattttggacagaatatttt 500
||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||||
Sbjct: 144810 aactgttaccgaaaccttccgtaaggtgccaccgttgccacattttgggcaaaatatttt 144751
Query: 501 accaatctcttgggtcaccttgtagcaagcatgacacctcagaacccacctg 552
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 144750 cccaatctcttgggtcaccttatagcaagcatgacacctcagaacccacctg 144699
Score = 129 bits (65), Expect = 1e-26
Identities = 102/113 (90%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 548 acctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaatctgg 607
||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 144600 acctgtgcaac-tgacgtatttgcatgccacctggtgccaagagacggagaccaatctgc 144542
Query: 608 aggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
||||| || |||||||||||||||||||| || | ||||||||||| |||||
Sbjct: 144541 aggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 144489
Score = 125 bits (63), Expect = 2e-25
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 266 gcttgcttgacttcttcgatttaggatgcagaaccttctgtggaagttggtcttcacgta 325
||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 145481 gcttgtttgacttcttcgatttagggtgcagaaccttctggggaagctggtcttcacgca 145422
Query: 326 aaatggggttcttaatgacggcatctcttccaccttgaggcat 368
||||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 145421 aaatgggattcttagttatggcatctcttccaccttggggcat 145379
Score = 123 bits (62), Expect = 8e-25
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 123 cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 145850 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 145791
Query: 183 cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
|||||| || ||||||||||| || ||||| ||||| ||||| | |||||||||||
Sbjct: 145790 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 145731
Query: 243 agcgcccaagaaatcatc 260
| ||||||||||||||
Sbjct: 145730 gacacccaagaaatcatc 145713
>emb|AL670231.7 | Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete
sequence
Length = 229957
Score = 40.1 bits (20), Expect = 9.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 494 atattttaccaatctcttgg 513
||||||||||||||||||||
Sbjct: 139170 atattttaccaatctcttgg 139151
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,408,677
Number of Sequences: 3902068
Number of extensions: 5408677
Number of successful extensions: 99717
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99600
Number of HSP's gapped (non-prelim): 108
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)