ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463864.1| Oryza sativa (japonica cultivar-group), mRNA 583 e-163
2dbj|AK102050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 567 e-158
3gb|AY105861.1| Zea mays PCO080437 mRNA sequence 404 e-109
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 230 5e-57
5dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 230 5e-57
6dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 230 5e-57
7gb|AC151526.7| Medicago truncatula clone mth2-78c9, complete seq... 50 0.009
8gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosom... 42 2.3
9gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome... 42 2.3
10gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com... 42 2.3
11gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C2... 42 2.3
12gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 42 2.3
13gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, co... 40 9.0
14gb|AC167185.4| Mus musculus chromosome 3, clone RP23-355G8, comp... 40 9.0
15gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Can... 40 9.0
16gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co... 40 9.0
17gb|AC103609.6| Mus musculus chromosome 3, clone RP23-359D10, com... 40 9.0
18gb|AC122185.4| Mus musculus BAC clone RP23-18J13 from chromosome... 40 9.0
19gb|AC023838.1| Arabidopsis thaliana chromosome III P1 MJM20 geno... 40 9.0
20emb|AL109760.3|HSJ513G18 Human DNA sequence from clone RP3-513G1... 40 9.0
21gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com... 40 9.0
22dbj|AP000385.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.0
23emb|Z68278.1|HSL226F1 Human DNA sequence from clone LA04NC01-226... 40 9.0
24emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on ch... 40 9.0
25emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chro... 40 9.0

>ref|XM_463864.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2013

 Score =  583 bits (294), Expect = e-163
 Identities = 478/538 (88%), Gaps = 1/538 (0%)
 Strand = Plus / Minus

                                                                        
Query: 123  cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
            |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 1777 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 1718

                                                                        
Query: 183  cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
            |||||| || |||||||||||    || ||||| ||||| ||||| |  |||||||||||
Sbjct: 1717 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 1658

                                                                        
Query: 243  agcgcccaagaaatcatcccccagcttgcttgacttcttcgatttaggatgcagaacctt 302
              | ||||||||||||||  || ||||| ||||||||||||||||||| |||||||||||
Sbjct: 1657 gacacccaagaaatcatcgtcctgcttgtttgacttcttcgatttagggtgcagaacctt 1598

                                                                        
Query: 303  ctgtggaagttggtcttcacgtaaaatggggttcttaatgacggcatctcttccaccttg 362
            ||| ||||| ||||||||||| |||||||| |||||| | | ||||||||||||||||||
Sbjct: 1597 ctggggaagctggtcttcacgcaaaatgggattcttagttatggcatctcttccaccttg 1538

                                                                        
Query: 363  aggcatcggaagtgaaaattttgtgcctcggagtgtaacacgcgggcgtcgtgaagccat 422
             ||||| || || ||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 1537 gggcattgggagggaaaattttgtgcctcgaagtgtcacacgcggacgtcgtgaggccat 1478

                                                                        
Query: 423  agtaatcccattttcaccaactgttactgaaaccttacgcaaggtgccgccattgccaca 482
            ||| ||||||||||||||||||||||| |||||||| || |||||||| || ||||||||
Sbjct: 1477 agtgatcccattttcaccaactgttaccgaaaccttccgtaaggtgccaccgttgccaca 1418

                                                                        
Query: 483  ttttggacagaatattttaccaatctcttgggtcaccttgtagcaagcatgacacctcag 542
            |||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1417 ttttgggcaaaatattttcccaatctcttgggtcaccttatagcaagcatgacacctcag 1358

                                                                        
Query: 543  aacccacctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaa 602
            ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1357 aacccacctgtgcaa-ctgacgtatttgcatgccacctggtgccaagagacggagaccaa 1299

                                                                      
Query: 603  tctggaggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
            |||| ||||| || |||||||||||||||||||| || |  ||||||||||| |||||
Sbjct: 1298 tctgcaggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 1241



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>dbj|AK102050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082B02, full
            insert sequence
          Length = 2009

 Score =  567 bits (286), Expect = e-158
 Identities = 476/538 (88%), Gaps = 1/538 (0%)
 Strand = Plus / Minus

                                                                        
Query: 123  cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
            |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 1773 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 1714

                                                                        
Query: 183  cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
            |||||| || |||||||||||    || ||||| ||||| ||||| |  |||||||||||
Sbjct: 1713 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 1654

                                                                        
Query: 243  agcgcccaagaaatcatcccccagcttgcttgacttcttcgatttaggatgcagaacctt 302
              | ||||||||||||||  || ||||| ||||||||||||||||||| |||||||||||
Sbjct: 1653 gacacccaagaaatcatcgtcctgcttgtttgacttcttcgatttagggtgcagaacctt 1594

                                                                        
Query: 303  ctgtggaagttggtcttcacgtaaaatggggttcttaatgacggcatctcttccaccttg 362
            ||| ||||| ||||||||||| |||||||| |||||| | | ||||||||||||||||||
Sbjct: 1593 ctggggaagctggtcttcacgcaaaatgggattcttagttatggcatctcttccaccttg 1534

                                                                        
Query: 363  aggcatcggaagtgaaaattttgtgcctcggagtgtaacacgcgggcgtcgtgaagccat 422
             ||||| || || ||||||||||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 1533 gggcattgggagggaaaattttgtgcctcgaagtgtcacacgcggacgtcgtgaggccat 1474

                                                                        
Query: 423  agtaatcccattttcaccaactgttactgaaaccttacgcaaggtgccgccattgccaca 482
            ||| ||||||||||||||||||||||| |||||||| || |||||||| || ||||||||
Sbjct: 1473 agtgatcccattttcaccaactgttaccgaaaccttccgtaaggtgccaccgttgccaca 1414

                                                                        
Query: 483  ttttggacagaatattttaccaatctcttgggtcaccttgtagcaagcatgacacctcag 542
            |||||| || |||||||| ||||||||||||||||||||  |||||||||||||||||||
Sbjct: 1413 ttttgggcaaaatattttcccaatctcttgggtcaccttacagcaagcatgacacctcag 1354

                                                                        
Query: 543  aacccacctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaa 602
            ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1353 aacccacctgtgcaa-ctgacgtatttgcatgccacctggtgccaagagacggagaccaa 1295

                                                                      
Query: 603  tctggaggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
            |||| ||||| || ||||||||||||||| |||| || |  ||||||||||| |||||
Sbjct: 1294 tctgcaggatgacattttgcatggcatagccactggttatgcatgctacagtagattc 1237



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>gb|AY105861.1| Zea mays PCO080437 mRNA sequence
          Length = 568

 Score =  404 bits (204), Expect = e-109
 Identities = 375/430 (87%), Gaps = 4/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 231 gaatatgtcctcagcgcccaagaaatcatcccccagcttgcttgacttcttcgatttagg 290
           ||||||||||||| ||||||||||||||||| ||   ||||| ||||||||| |||||||
Sbjct: 560 gaatatgtcctcaacgcccaagaaatcatccgcc---ttgctggacttcttcaatttagg 504

                                                                       
Query: 291 atgcagaaccttctgtggaagttggtcttcacgtaaaatggggttcttaatgacggcatc 350
           ||| ||||||||||| ||||| ||||| ||||||| ||||||||||||| | | ||||||
Sbjct: 503 atgaagaaccttctgaggaagctggtcctcacgtagaatggggttcttagttatggcatc 444

                                                                       
Query: 351 tcttccaccttgaggcatcggaagtgaaaattttgtgcctcggagtgtaacacgcgggcg 410
           |||||||||||||||||| || || ||||||||||||||||| ||||||||||| |||||
Sbjct: 443 tcttccaccttgaggcattgggagcgaaaattttgtgcctcgaagtgtaacacgtgggcg 384

                                                                       
Query: 411 tcgtgaagccatagtaatcccattttcaccaactgttactgaaaccttacgcaaggtgcc 470
            |||||||||||||| ||||| |||||||||||||| ||||| ||||| |  ||||| ||
Sbjct: 383 ccgtgaagccatagtgatcccgttttcaccaactgtcactgagaccttccttaaggtccc 324

                                                                       
Query: 471 gccattgccacattttggacagaatattttaccaatctcttgggtcaccttgtagcaagc 530
            ||||||||||| || ||||| |||||||| |||| ||||||||||||||| ||||||||
Sbjct: 323 accattgccacacttcggacaaaatattttgccaacctcttgggtcaccttatagcaagc 264

                                                                       
Query: 531 atgacacctcagaacccacctgtgcaacctgacgtatttgcataccgcctggtgccaaga 590
           ||| ||||||| ||||||||| ||| | ||| ||||| ||||| || |||||||| | ||
Sbjct: 263 atggcacctcaaaacccacctatgc-atctggcgtatctgcatgccacctggtgctatga 205

                                                                       
Query: 591 gacggagaccaatctggaggataacgttttgcatggcatagtcactagtaacacatgcta 650
           | ||||| |||||||| ||||| ||||||||||| || || |||||||||||||||||||
Sbjct: 204 gccggaggccaatctgcaggatgacgttttgcatcgcgtaatcactagtaacacatgcta 145

                     
Query: 651 cagttgattc 660
            |||||||||
Sbjct: 144 tagttgattc 135



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score =  230 bits (116), Expect = 5e-57
 Identities = 158/172 (91%)
 Strand = Plus / Minus

                                                                          
Query: 381    ttttgtgcctcggagtgtaacacgcgggcgtcgtgaagccatagtaatcccattttcacc 440
              |||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 787975 ttttgtgcctcgaagtgtcacacgcggacgtcgtgaggccatagtgatcccattttcacc 787916

                                                                          
Query: 441    aactgttactgaaaccttacgcaaggtgccgccattgccacattttggacagaatatttt 500
              ||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||||
Sbjct: 787915 aactgttaccgaaaccttccgtaaggtgccaccgttgccacattttgggcaaaatatttt 787856

                                                                  
Query: 501    accaatctcttgggtcaccttgtagcaagcatgacacctcagaacccacctg 552
               |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 787855 cccaatctcttgggtcaccttatagcaagcatgacacctcagaacccacctg 787804



 Score =  129 bits (65), Expect = 1e-26
 Identities = 102/113 (90%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                          
Query: 548    acctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaatctgg 607
              ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| 
Sbjct: 787705 acctgtgcaac-tgacgtatttgcatgccacctggtgccaagagacggagaccaatctgc 787647

                                                                   
Query: 608    aggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
              ||||| || |||||||||||||||||||| || |  ||||||||||| |||||
Sbjct: 787646 aggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 787594



 Score =  125 bits (63), Expect = 2e-25
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                          
Query: 266    gcttgcttgacttcttcgatttaggatgcagaaccttctgtggaagttggtcttcacgta 325
              ||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 788586 gcttgtttgacttcttcgatttagggtgcagaaccttctggggaagctggtcttcacgca 788527

                                                         
Query: 326    aaatggggttcttaatgacggcatctcttccaccttgaggcat 368
              ||||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 788526 aaatgggattcttagttatggcatctcttccaccttggggcat 788484



 Score =  123 bits (62), Expect = 8e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                          
Query: 123    cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
              |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 788955 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 788896

                                                                          
Query: 183    cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
              |||||| || |||||||||||    || ||||| ||||| ||||| |  |||||||||||
Sbjct: 788895 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 788836

                                
Query: 243    agcgcccaagaaatcatc 260
                | ||||||||||||||
Sbjct: 788835 gacacccaagaaatcatc 788818



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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0036E06
          Length = 137926

 Score =  230 bits (116), Expect = 5e-57
 Identities = 158/172 (91%)
 Strand = Plus / Minus

                                                                         
Query: 381   ttttgtgcctcggagtgtaacacgcgggcgtcgtgaagccatagtaatcccattttcacc 440
             |||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 66106 ttttgtgcctcgaagtgtcacacgcggacgtcgtgaggccatagtgatcccattttcacc 66047

                                                                         
Query: 441   aactgttactgaaaccttacgcaaggtgccgccattgccacattttggacagaatatttt 500
             ||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||||
Sbjct: 66046 aactgttaccgaaaccttccgtaaggtgccaccgttgccacattttgggcaaaatatttt 65987

                                                                 
Query: 501   accaatctcttgggtcaccttgtagcaagcatgacacctcagaacccacctg 552
              |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 65986 cccaatctcttgggtcaccttatagcaagcatgacacctcagaacccacctg 65935



 Score =  129 bits (65), Expect = 1e-26
 Identities = 102/113 (90%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                         
Query: 548   acctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaatctgg 607
             ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| 
Sbjct: 65836 acctgtgcaac-tgacgtatttgcatgccacctggtgccaagagacggagaccaatctgc 65778

                                                                  
Query: 608   aggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
             ||||| || |||||||||||||||||||| || |  ||||||||||| |||||
Sbjct: 65777 aggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 65725



 Score =  125 bits (63), Expect = 2e-25
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                         
Query: 266   gcttgcttgacttcttcgatttaggatgcagaaccttctgtggaagttggtcttcacgta 325
             ||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 66717 gcttgtttgacttcttcgatttagggtgcagaaccttctggggaagctggtcttcacgca 66658

                                                        
Query: 326   aaatggggttcttaatgacggcatctcttccaccttgaggcat 368
             ||||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 66657 aaatgggattcttagttatggcatctcttccaccttggggcat 66615



 Score =  123 bits (62), Expect = 8e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                         
Query: 123   cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
             |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 67086 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 67027

                                                                         
Query: 183   cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
             |||||| || |||||||||||    || ||||| ||||| ||||| |  |||||||||||
Sbjct: 67026 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 66967

                               
Query: 243   agcgcccaagaaatcatc 260
               | ||||||||||||||
Sbjct: 66966 gacacccaagaaatcatc 66949



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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1399_H05
          Length = 147670

 Score =  230 bits (116), Expect = 5e-57
 Identities = 158/172 (91%)
 Strand = Plus / Minus

                                                                          
Query: 381    ttttgtgcctcggagtgtaacacgcgggcgtcgtgaagccatagtaatcccattttcacc 440
              |||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 144870 ttttgtgcctcgaagtgtcacacgcggacgtcgtgaggccatagtgatcccattttcacc 144811

                                                                          
Query: 441    aactgttactgaaaccttacgcaaggtgccgccattgccacattttggacagaatatttt 500
              ||||||||| |||||||| || |||||||| || |||||||||||||| || ||||||||
Sbjct: 144810 aactgttaccgaaaccttccgtaaggtgccaccgttgccacattttgggcaaaatatttt 144751

                                                                  
Query: 501    accaatctcttgggtcaccttgtagcaagcatgacacctcagaacccacctg 552
               |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 144750 cccaatctcttgggtcaccttatagcaagcatgacacctcagaacccacctg 144699



 Score =  129 bits (65), Expect = 1e-26
 Identities = 102/113 (90%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                          
Query: 548    acctgtgcaacctgacgtatttgcataccgcctggtgccaagagacggagaccaatctgg 607
              ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| 
Sbjct: 144600 acctgtgcaac-tgacgtatttgcatgccacctggtgccaagagacggagaccaatctgc 144542

                                                                   
Query: 608    aggataacgttttgcatggcatagtcactagtaacacatgctacagttgattc 660
              ||||| || |||||||||||||||||||| || |  ||||||||||| |||||
Sbjct: 144541 aggatgacattttgcatggcatagtcactggttatgcatgctacagtagattc 144489



 Score =  125 bits (63), Expect = 2e-25
 Identities = 93/103 (90%)
 Strand = Plus / Minus

                                                                          
Query: 266    gcttgcttgacttcttcgatttaggatgcagaaccttctgtggaagttggtcttcacgta 325
              ||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct: 145481 gcttgtttgacttcttcgatttagggtgcagaaccttctggggaagctggtcttcacgca 145422

                                                         
Query: 326    aaatggggttcttaatgacggcatctcttccaccttgaggcat 368
              ||||||| |||||| | | |||||||||||||||||| |||||
Sbjct: 145421 aaatgggattcttagttatggcatctcttccaccttggggcat 145379



 Score =  123 bits (62), Expect = 8e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                          
Query: 123    cttcttgcgagaaaagtggttgtcattcggattccgcttcccgctgaacattgccagcgc 182
              |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct: 145850 cttcttgcgagaaaagtggttgtcattcggattccgtttcccactgaacattgcaagggc 145791

                                                                          
Query: 183    cttccttaccggaggtttcagctccaccttcttctcaccactgtgtgtgaatatgtcctc 242
              |||||| || |||||||||||    || ||||| ||||| ||||| |  |||||||||||
Sbjct: 145790 cttcctcactggaggtttcagtggtactttcttttcaccgctgtgcgaaaatatgtcctc 145731

                                
Query: 243    agcgcccaagaaatcatc 260
                | ||||||||||||||
Sbjct: 145730 gacacccaagaaatcatc 145713



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>gb|AC151526.7| Medicago truncatula clone mth2-78c9, complete sequence
          Length = 134556

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 462    caaggtgccgccattgccacattttggacagaa 494
              ||||||||||||||| || ||||||||||||||
Sbjct: 126418 caaggtgccgccatttccgcattttggacagaa 126386



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 462    caaggtgccgccattgccacattttggacaga 493
              ||||||||| ||||| ||||||||||||||||
Sbjct: 130833 caaggtgccaccatttccacattttggacaga 130802



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>gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosome 12, complete
             sequence
          Length = 202970

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   cccaagaaatcatcccccagc 267
             |||||||||||||||||||||
Sbjct: 57739 cccaagaaatcatcccccagc 57759



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>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 288   aggatgcagaaccttctgtggaagt 312
             |||| ||||||||||||||||||||
Sbjct: 93562 aggaggcagaaccttctgtggaagt 93538



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>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 288   aggatgcagaaccttctgtggaagt 312
             |||| ||||||||||||||||||||
Sbjct: 10901 aggaggcagaaccttctgtggaagt 10877



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>gb|AC008513.7|AC008513 Homo sapiens chromosome 5 clone CTC-455C23, complete sequence
          Length = 224058

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 367    atcggaagtgaaaattttgtg 387
              |||||||||||||||||||||
Sbjct: 178527 atcggaagtgaaaattttgtg 178547



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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 305    gtggaagttggtcttcacgtaaaat 329
              |||||||||| ||||||||||||||
Sbjct: 520653 gtggaagttgatcttcacgtaaaat 520629



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>gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, complete sequence
          Length = 221632

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   ccatagtaatcccattttca 438
             ||||||||||||||||||||
Sbjct: 48296 ccatagtaatcccattttca 48277



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>gb|AC167185.4| Mus musculus chromosome 3, clone RP23-355G8, complete sequence
          Length = 213731

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   ttcagctccaccttcttctc 218
             ||||||||||||||||||||
Sbjct: 25987 ttcagctccaccttcttctc 25968



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>gb|AC153607.15| Mus musculus 6 BAC RP23-100I21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 222828

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    tttcagctccaccttcttct 217
              ||||||||||||||||||||
Sbjct: 134764 tttcagctccaccttcttct 134745



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>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence
          Length = 198984

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 419  ccatagtaatcccattttca 438
            ||||||||||||||||||||
Sbjct: 1479 ccatagtaatcccattttca 1498



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>gb|AC103609.6| Mus musculus chromosome 3, clone RP23-359D10, complete sequence
          Length = 182664

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    ttcagctccaccttcttctc 218
              ||||||||||||||||||||
Sbjct: 121919 ttcagctccaccttcttctc 121900



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>gb|AC122185.4| Mus musculus BAC clone RP23-18J13 from chromosome 15, complete sequence
          Length = 202485

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    tatagataacactctggttt 49
             ||||||||||||||||||||
Sbjct: 49280 tatagataacactctggttt 49299



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>gb|AC023838.1| Arabidopsis thaliana chromosome III P1 MJM20 genomic sequence, complete
             sequence
          Length = 15401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   agaatattttaccaatctct 510
             ||||||||||||||||||||
Sbjct: 10769 agaatattttaccaatctct 10788



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>emb|AL109760.3|HSJ513G18 Human DNA sequence from clone RP3-513G18 on chromosome 4, complete
             sequence
          Length = 112560

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   gtgaagccatagtaatccca 432
             ||||||||||||||||||||
Sbjct: 61407 gtgaagccatagtaatccca 61388



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>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence
          Length = 194165

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 419    ccatagtaatcccattttca 438
              ||||||||||||||||||||
Sbjct: 185053 ccatagtaatcccattttca 185034



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>dbj|AP000385.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MJM20
          Length = 15401

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   agaatattttaccaatctct 510
             ||||||||||||||||||||
Sbjct: 10769 agaatattttaccaatctct 10788



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>emb|Z68278.1|HSL226F1 Human DNA sequence from clone LA04NC01-226F1 on chromosome 4,
            complete sequence
          Length = 8717

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  gtgaagccatagtaatccca 432
            ||||||||||||||||||||
Sbjct: 1625 gtgaagccatagtaatccca 1606



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>emb|AL772328.13| Mouse DNA sequence from clone RP23-270A19 on chromosome 4, complete
              sequence
          Length = 219095

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 481    cattttggacagaatatttt 500
              ||||||||||||||||||||
Sbjct: 137842 cattttggacagaatatttt 137823



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>emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete
              sequence
          Length = 229957

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    atattttaccaatctcttgg 513
              ||||||||||||||||||||
Sbjct: 139170 atattttaccaatctcttgg 139151


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,408,677
Number of Sequences: 3902068
Number of extensions: 5408677
Number of successful extensions: 99717
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99600
Number of HSP's gapped (non-prelim): 108
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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