ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in... 42 0.66
2emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, co... 42 0.66
3ref|XM_475671.1| Oryza sativa (japonica cultivar-group), predic... 40 2.6
4gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
5emb|CR388161.7| Zebrafish DNA sequence from clone CH211-288B17 i... 40 2.6
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
7gb|AC135673.5| Mus musculus BAC clone RP24-279A17 from 16, compl... 40 2.6
8gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, compl... 40 2.6

>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13,
              complete sequence
          Length = 258636

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     acattaacagttcagcaactt 79
              |||||||||||||||||||||
Sbjct: 202672 acattaacagttcagcaactt 202652



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>emb|BX001007.6| Zebrafish DNA sequence from clone DKEY-97C13, complete sequence
          Length = 113198

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    acattaacagttcagcaactt 79
             |||||||||||||||||||||
Sbjct: 73895 acattaacagttcagcaactt 73875



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>ref|XM_475671.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 366

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 128 ccgacacggtacaccaatgccaca 151
           |||| |||||||||||||||||||
Sbjct: 132 ccgaaacggtacaccaatgccaca 109



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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 128   ccgacacggtacaccaatgccaca 151
             |||| |||||||||||||||||||
Sbjct: 69596 ccgaaacggtacaccaatgccaca 69619



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>emb|CR388161.7| Zebrafish DNA sequence from clone CH211-288B17 in linkage group 18,
            complete sequence
          Length = 80508

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   aacaaagacattaacagttc 71
            ||||||||||||||||||||
Sbjct: 7268 aacaaagacattaacagttc 7249



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 128      ccgacacggtacaccaatgccaca 151
                |||| |||||||||||||||||||
Sbjct: 25000743 ccgaaacggtacaccaatgccaca 25000766



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>gb|AC135673.5| Mus musculus BAC clone RP24-279A17 from 16, complete sequence
          Length = 173965

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     acacacccaaacaaaacagc 115
              ||||||||||||||||||||
Sbjct: 100954 acacacccaaacaaaacagc 100935



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>gb|AC140983.4| Mus musculus BAC clone RP23-167M17 from 18, complete sequence
          Length = 193004

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ccaacaaagacattaacagt 69
              ||||||||||||||||||||
Sbjct: 149728 ccaacaaagacattaacagt 149709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,712,290
Number of Sequences: 3902068
Number of extensions: 1712290
Number of successful extensions: 103900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103858
Number of HSP's gapped (non-prelim): 42
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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