ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20o12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY772416.1| Oryza sativa (japonica cultivar-group) peroxisoma... 129 2e-27
2gb|AY772415.1| Oryza sativa (japonica cultivar-group) peroxisoma... 129 2e-27
3ref|XM_483184.1| Oryza sativa (japonica cultivar-group), mRNA 129 2e-27
4ref|XM_483185.1| Oryza sativa (japonica cultivar-group), mRNA 129 2e-27
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 129 2e-27
6dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic D... 129 2e-27
7dbj|AK065120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 2e-27
8dbj|AK064832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 2e-27
9gb|BT018851.1| Zea mays clone EL01N0555H04.d mRNA sequence 119 2e-24
10gb|AF068690.1|AF068690 Citrullus lanatus peroxisomal targeting s... 74 9e-11
11gb|DQ288941.1| Brassica napus peroxisomal import receptor PTS1 m... 62 3e-07
12gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete s... 56 2e-05
13ref|NM_125012.3| Arabidopsis thaliana PEX5; peroxisome targeting... 54 8e-05
14gb|AY096679.1| Arabidopsis thaliana putative peroxisomal targeti... 54 8e-05
15gb|AY056299.1| Arabidopsis thaliana putative peroxisomal targeti... 54 8e-05
16dbj|AB009049.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 54 8e-05
17gb|AF074843.1|AF074843 Arabidopsis thaliana peroxisomal targetin... 54 8e-05
18gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complet... 50 0.001
19gb|AF056282.1|AF056282 Nicotiana tabacum clone 165 peroxisomal t... 48 0.005
20gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome... 40 1.2
21gb|AF056283.1|AF056283 Nicotiana tabacum clone 354 peroxisomal t... 40 1.2
22gb|AF053104.1|AF053104 Nicotiana tabacum peroxisomal targeting s... 40 1.2
23emb|CT030357.1| Xenopus tropicalis finished cDNA, clone TGas066i05 38 4.9
24ref|NM_001032308.1| Xenopus tropicalis DNA polymerase iota (poli... 38 4.9
25emb|AL162414.11| Human DNA sequence from clone RP11-202G18 on ch... 38 4.9
26gb|DQ102380.1| Xenopus tropicalis DNA polymerase iota (POLI) mRN... 38 4.9
27emb|BX324117.16| Mouse DNA sequence from clone RP23-389N3 on chr... 38 4.9
28gb|AC161871.5| Mus musculus BAC clone RP24-84N15 from chromosome... 38 4.9 
>gb|AY772416.1| Oryza sativa (japonica cultivar-group) peroxisomal targeting signal 1
            receptor short form (PEX5) mRNA, complete cds,
            alternatively spliced
          Length = 2527

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1864 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 1805

                             
Query: 73   tcttgtggtttcagctg 89
            |||||||||||||||||
Sbjct: 1804 tcttgtggtttcagctg 1788
to top
>gb|AY772415.1| Oryza sativa (japonica cultivar-group) peroxisomal targeting signal 1
            receptor long form (PEX5) mRNA, complete cds,
            alternatively spliced
          Length = 2698

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2035 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 1976

                             
Query: 73   tcttgtggtttcagctg 89
            |||||||||||||||||
Sbjct: 1975 tcttgtggtttcagctg 1959
to top
>ref|XM_483184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2693

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2049 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 1990

                             
Query: 73   tcttgtggtttcagctg 89
            |||||||||||||||||
Sbjct: 1989 tcttgtggtttcagctg 1973
to top
>ref|XM_483185.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2526

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1882 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 1823

                             
Query: 73   tcttgtggtttcagctg 89
            |||||||||||||||||
Sbjct: 1822 tcttgtggtttcagctg 1806
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                            
Query: 13       gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
                |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 24684958 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 24684899

                                 
Query: 73       tcttgtggtttcagctg 89
                |||||||||||||||||
Sbjct: 24684898 tcttgtggtttcagctg 24684882
to top
>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A06
          Length = 92836

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                         
Query: 13    gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
             |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 57262 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 57203

                              
Query: 73    tcttgtggtttcagctg 89
             |||||||||||||||||
Sbjct: 57202 tcttgtggtttcagctg 57186
to top
>dbj|AK065120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O15, full
            insert sequence
          Length = 2693

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 2049 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 1990

                             
Query: 73   tcttgtggtttcagctg 89
            |||||||||||||||||
Sbjct: 1989 tcttgtggtttcagctg 1973
to top
>dbj|AK064832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F17, full
            insert sequence
          Length = 2526

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 1882 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattccagagagaatag 1823

                             
Query: 73   tcttgtggtttcagctg 89
            |||||||||||||||||
Sbjct: 1822 tcttgtggtttcagctg 1806
to top
>gb|BT018851.1| Zea mays clone EL01N0555H04.d mRNA sequence
          Length = 2135

 Score =  119 bits (60), Expect = 2e-24
 Identities = 87/96 (90%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |||
Sbjct: 1542 gcatcagcactctggatgctgtttgcttgggttgcaccaagcttgttccagagtgagtag 1483

                                                
Query: 73   tcttgtggtttcagctgtagtgccgtcttaaatgaa 108
            || |||||||| ||||||| ||| ||||||||||||
Sbjct: 1482 tcctgtggtttgagctgtactgctgtcttaaatgaa 1447
to top
>gb|AF068690.1|AF068690 Citrullus lanatus peroxisomal targeting signal-1 receptor (PEX5)
            mRNA, complete cds
          Length = 2503

 Score = 73.8 bits (37), Expect = 9e-11
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            ||||||||||| || |||||||| ||||| || ||||| |||||||||||||||||||| 
Sbjct: 1744 gcatcagcactttgaatgctgttagcttgtgtagcacctagcttgttccaaagagaataa 1685

                 
Query: 73   tcttg 77
            |||||
Sbjct: 1684 tcttg 1680
to top
>gb|DQ288941.1| Brassica napus peroxisomal import receptor PTS1 mRNA, complete cds
          Length = 2424

 Score = 61.9 bits (31), Expect = 3e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaata 71
            ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 1937 gcatcagcactctggacactgttggcttgtgttgcaccaagcttattccaaagagaata 1879
to top
>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 13     gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
              ||||||||||| || |  ||||||||||| || ||||| ||||||||||| ||||| || 
Sbjct: 128514 gcatcagcactttgaacactgtttgcttgtgttgcaccaagcttgttccagagagagtaa 128573

                      
Query: 73     tcttgtgg 80
              ||||||||
Sbjct: 128574 tcttgtgg 128581
to top
>ref|NM_125012.3| Arabidopsis thaliana PEX5; peroxisome targeting signal-1 binding
            AT5G56290 (PEX5) mRNA, complete cds
          Length = 2460

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaata 71
            ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct: 2054 gcatcagcactctggacactgttggcttgcgttgcacctagcttattccacagagaata 1996
to top
>gb|AY096679.1| Arabidopsis thaliana putative peroxisomal targeting signal type 1
            receptor protein (At5g56290) mRNA, complete cds
          Length = 2218

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaata 71
            ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct: 1928 gcatcagcactctggacactgttggcttgcgttgcacctagcttattccacagagaata 1870
to top
>gb|AY056299.1| Arabidopsis thaliana putative peroxisomal targeting signal type 1
            receptor protein (At5g56290) mRNA, complete cds
          Length = 2470

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaata 71
            ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct: 2047 gcatcagcactctggacactgttggcttgcgttgcacctagcttattccacagagaata 1989
to top
>dbj|AB009049.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCD7
          Length = 87685

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaata 71
            ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct: 4558 gcatcagcactctggacactgttggcttgcgttgcacctagcttattccacagagaata 4500
to top
>gb|AF074843.1|AF074843 Arabidopsis thaliana peroxisomal targeting signal type 1 receptor
            (PEX5) mRNA, complete cds
          Length = 2316

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                       
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaata 71
            ||||||||||||||||  ||||| ||||| || ||||| ||||| ||||| ||||||||
Sbjct: 2057 gcatcagcactctggacactgttggcttgcgttgcacctagcttattccacagagaata 1999
to top
>gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complete sequence
          Length = 193650

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 20     cactctggatgctgtttgcttgggt 44
              |||||||||||||||||||||||||
Sbjct: 176941 cactctggatgctgtttgcttgggt 176965
to top
>gb|AF056282.1|AF056282 Nicotiana tabacum clone 165 peroxisomal targeting sequence 1 receptor
            (PEX5) mRNA, partial cds
          Length = 2078

 Score = 48.1 bits (24), Expect = 0.005
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||| | |||||| ||||| || ||||| ||||| ||||| || || |||
Sbjct: 1400 gcatcagcactctgaacgctgttagcttgtgttgcaccaagcttattccagagtgagtag 1341

                                            
Query: 73   tcttgtggtttcagctgtagtgccgtcttaaa 104
            ||    ||||| |||| |||||| ||||||||
Sbjct: 1340 tccctaggtttgagctttagtgctgtcttaaa 1309
to top
>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence
          Length = 248060

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     ttgtggtttcagctgtagtg 94
              ||||||||||||||||||||
Sbjct: 184916 ttgtggtttcagctgtagtg 184935
to top
>gb|AF056283.1|AF056283 Nicotiana tabacum clone 354 peroxisomal targeting sequence 1
           receptor (PEX5) mRNA, partial cds
          Length = 1474

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                       
Query: 13  gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
           |||||||||||||| |  ||||| ||||| || ||||| ||||| ||||| || || |||
Sbjct: 740 gcatcagcactctgaacactgttagcttgtgttgcaccaagcttattccagagtgagtag 681

                                           
Query: 73  tcttgtggtttcagctgtagtgccgtcttaaa 104
           ||    ||||| |||| |||||| ||||||||
Sbjct: 680 tccctaggtttgagctttagtgctgtcttaaa 649
to top
>gb|AF053104.1|AF053104 Nicotiana tabacum peroxisomal targeting signal 1 receptor (PEX5)
            mRNA, complete cds
          Length = 2823

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 74/92 (80%)
 Strand = Plus / Minus

                                                                        
Query: 13   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttccaaagagaatag 72
            |||||||||||||| |  ||||| ||||| || ||||| ||||| ||||| || || |||
Sbjct: 2108 gcatcagcactctgaacactgttagcttgtgttgcaccaagcttattccagagtgagtag 2049

                                            
Query: 73   tcttgtggtttcagctgtagtgccgtcttaaa 104
            ||    ||||| |||| |||||| ||||||||
Sbjct: 2048 tccctaggtttgagctttagtgctgtcttaaa 2017
to top
>emb|CT030357.1| Xenopus tropicalis finished cDNA, clone TGas066i05
          Length = 2863

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ttcagctgtagtgccgtct 100
           |||||||||||||||||||
Sbjct: 977 ttcagctgtagtgccgtct 995
to top
>ref|NM_001032308.1| Xenopus tropicalis DNA polymerase iota (poli), mRNA
          Length = 2229

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ttcagctgtagtgccgtct 100
           |||||||||||||||||||
Sbjct: 933 ttcagctgtagtgccgtct 951
to top
>emb|AL162414.11| Human DNA sequence from clone RP11-202G18 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 176689

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    aaagagaatagtcttgtgg 80
             |||||||||||||||||||
Sbjct: 32644 aaagagaatagtcttgtgg 32662
to top
>gb|DQ102380.1| Xenopus tropicalis DNA polymerase iota (POLI) mRNA, complete cds
          Length = 2229

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ttcagctgtagtgccgtct 100
           |||||||||||||||||||
Sbjct: 933 ttcagctgtagtgccgtct 951
to top
>emb|BX324117.16| Mouse DNA sequence from clone RP23-389N3 on chromosome X, complete
             sequence
          Length = 155139

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    gcttgttccaaagagaata 71
             |||||||||||||||||||
Sbjct: 84131 gcttgttccaaagagaata 84113
to top
>gb|AC161871.5| Mus musculus BAC clone RP24-84N15 from chromosome 14, complete sequence
          Length = 204723

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 59     tccaaagagaatagtcttg 77
              |||||||||||||||||||
Sbjct: 145609 tccaaagagaatagtcttg 145627


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 761,678
Number of Sequences: 3902068
Number of extensions: 761678
Number of successful extensions: 45242
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 45195
Number of HSP's gapped (non-prelim): 49
length of query: 108
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 87
effective length of database: 17,151,101,840
effective search space: 1492145860080
effective search space used: 1492145860080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top