ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20o10 |
|---|---|
| Clone Library Name | barley_pub |
>BXDC1_ORYSA (Q9AWM9) Brix domain-containing protein 1 homolog| Length = 310 Score = 245 bits (625), Expect(2) = 1e-68 Identities = 116/151 (76%), Positives = 139/151 (92%) Frame = -3 Query: 628 VEGLKHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGTSIPR 449 VE LKHLKE+LLD FKGEVVENLNLAGVDR+FVCTAISPTTVYMMHCALRLKRSGTSIPR Sbjct: 157 VEELKHLKEVLLDLFKGEVVENLNLAGVDRVFVCTAISPTTVYMMHCALRLKRSGTSIPR 216 Query: 448 MELVEVGPSMDLVLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEV 269 +ELVEVGPSMDLV+RRHR +SL+KEAMK HAKK+KNVT P+ GK G++YIPDQ++ Sbjct: 217 IELVEVGPSMDLVVRRHRYPVESLKKEAMKTADHAKKMKNVTKDPVHGKLGKVYIPDQQI 276 Query: 268 SKLTVTSNIKGLKRERRDAKKNKEHSKKQKV 176 +K+++++++KGLKRERR+AKKNK+HSKKQK+ Sbjct: 277 AKMSLSNDVKGLKRERREAKKNKDHSKKQKI 307 Score = 35.0 bits (79), Expect(2) = 1e-68 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -2 Query: 677 LGTKPFFAFIGEHFE 633 LG+KPFFAFIGEHFE Sbjct: 141 LGSKPFFAFIGEHFE 155
>BXDC1_ARATH (Q9LUG5) Brix domain-containing protein 1 homolog| Length = 314 Score = 172 bits (437), Expect(2) = 1e-44 Identities = 90/159 (56%), Positives = 118/159 (74%), Gaps = 3/159 (1%) Frame = -3 Query: 628 VEGLKHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGTSIPR 449 V LKHLKE+L D F+GEVV+NLNL G+DR +VC+AISPT V++ HCAL+LK+SG+ +PR Sbjct: 156 VSELKHLKEVLTDLFRGEVVDNLNLTGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPR 215 Query: 448 MELVEVGPSMDLVLRRHRQAADSLQKEAMKAPGH--AKKVKNVTDHPIEGKRGRIYIPDQ 275 MELVEVGPSMDLV+RR+R DSL KEAM+ KK KNV + GK G+IY+PDQ Sbjct: 216 MELVEVGPSMDLVIRRNRLPNDSLMKEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQ 275 Query: 274 EVSKLTVTSNIKGLKRERRDAK-KNKEHSKKQKVGESPE 161 ++ ++ + KG KRER+DAK K+KE + +K+ S E Sbjct: 276 KLKEMKLFDKSKGSKRERKDAKLKHKEETVAKKMKVSSE 314 Score = 27.3 bits (59), Expect(2) = 1e-44 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = -2 Query: 674 GTKPFFAFIGEHFE 633 GTKPF FIGE FE Sbjct: 141 GTKPFICFIGEGFE 154
>BXDC1_HUMAN (Q9H7B2) Brix domain-containing protein 1| Length = 306 Score = 100 bits (249), Expect = 4e-21 Identities = 62/151 (41%), Positives = 90/151 (59%), Gaps = 2/151 (1%) Frame = -3 Query: 625 EGLKHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGTSIPRM 446 E + LK +L+D F+G V N+ LAG++ + TA++ +Y L LK+SG PR+ Sbjct: 154 EDYRRLKSLLIDFFRGPTVSNIRLAGLEYVLHFTALNGK-IYFRSYKLLLKKSGCRTPRI 212 Query: 445 ELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVKNVTDHPIEGKRGRIYIPDQE 272 EL E+GPS+DLVLRR A+D L K +MK P KK KN++ GRI++ Q+ Sbjct: 213 ELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQD 272 Query: 271 VSKLTVTSNIKGLKRERRDAKKNKEHSKKQK 179 +SKL T +KGLK+ R + ++H KK K Sbjct: 273 LSKLQ-TRKMKGLKK-RPAERITEDHEKKSK 301
>BXDC1_MOUSE (Q9JJ80) Brix domain-containing protein 1| Length = 306 Score = 96.7 bits (239), Expect = 6e-20 Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 2/152 (1%) Frame = -3 Query: 625 EGLKHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGTSIPRM 446 E + LK +L+D F+G V N+ LAG++ + TA++ VY L LK+SG PR+ Sbjct: 154 EDFRRLKNLLIDFFRGPTVSNVRLAGLEYVLHFTALNGK-VYFRSYKLLLKKSGCRTPRI 212 Query: 445 ELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVKNVTDHPIEGKRGRIYIPDQE 272 EL E+GPS+DLV+RR A+D L K +MK P KK KN++ GRI++ Q+ Sbjct: 213 ELEEMGPSLDLVMRRTHLASDDLYKLSMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQD 272 Query: 271 VSKLTVTSNIKGLKRERRDAKKNKEHSKKQKV 176 +SKL T +KGLK+ + + + K +++ Sbjct: 273 LSKLQ-TRKMKGLKKRPAENGVDDQGKKSKRI 303
>BXDC1_DROME (Q9VEB3) Brix domain-containing protein 1 homolog| Length = 320 Score = 88.6 bits (218), Expect = 2e-17 Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 2/148 (1%) Frame = -3 Query: 625 EGLKHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGTSIPRM 446 E L+ L+ + +D F+ E V+++ L G++ + T + M + LK+SG PR+ Sbjct: 153 EELRRLRNLFIDTFQREKVDSIRLQGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPRI 212 Query: 445 ELVEVGPSMDLVLRRHRQAADSLQKEAMKAPGHAK--KVKNVTDHPIEGKRGRIYIPDQE 272 EL E+GPS D +RR + A++ L K+A K P K K KN++ + +GR+++ Q+ Sbjct: 213 ELEEIGPSADFSIRRTKIASEDLYKQARKQPKQLKVGKKKNISTDALGNTKGRVHLGKQQ 272 Query: 271 VSKLTVTSNIKGLKRERRDAKKNKEHSK 188 + T +K L++ + K+N++ K Sbjct: 273 TGSIQ-TRRVKALRKTPEEKKENRQRKK 299
>BXDC1_SCHPO (Q9UUG1) Brix domain-containing protein 1 homolog| Length = 317 Score = 79.3 bits (194), Expect = 1e-14 Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 13/165 (7%) Frame = -3 Query: 616 KHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTT--------VYMMHCALRLKRSGT 461 +H+K + LD F+GE ++ L+ AG+ + V +A V+ +L ++ T Sbjct: 154 RHIKSLFLDFFRGEPIQKLDSAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKT 213 Query: 460 SIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAP--GHAKKVKNVTDHPIEGKRGRIY 287 ++PR+EL E+GP +D +RR + A + +EA+K P K KNV I K GRI+ Sbjct: 214 NLPRVELEEMGPRIDFNIRRVQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIH 273 Query: 286 IPDQEVSKLTVTSNIKGLKR---ERRDAKKNKEHSKKQKVGESPE 161 + Q++ L T +KGLKR ER D++ + ++ + ++ E Sbjct: 274 VDQQDLGNLQ-TRKMKGLKRSVEEREDSENEEVEIEEDVISDASE 317
>BXDC1_CAEEL (Q9N3F0) Brix domain-containing protein 1 homolog| Length = 297 Score = 68.9 bits (167), Expect = 1e-11 Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 2/133 (1%) Frame = -3 Query: 619 LKHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGTSIPRMEL 440 +K + +++D F+G V+ + L G++ + V TA+ T + + LK+S T+ PR+EL Sbjct: 153 MKRIGNLMVDWFRGPKVDTVRLEGLETVIVFTALDETNLALRVYRPMLKKSATATPRVEL 212 Query: 439 VEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVKNVTDHPIEGKRGRIYIPDQEVS 266 E+GPS+ + R + A D+L K A K P K+ KN+++ + R+++ Q Sbjct: 213 AEMGPSISFEVMRKKLADDALFKLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTD 272 Query: 265 KLTVTSNIKGLKR 227 + T +K L++ Sbjct: 273 DIQ-TRKVKALRK 284
>RPF2_YEAST (P36160) Ribosome biogenesis protein RPF2| Length = 344 Score = 59.3 bits (142), Expect = 1e-08 Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 12/141 (8%) Frame = -3 Query: 616 KHLKEMLLDHFKGEVVENLNLAGVDRIFVCTAIS--------PTTVYMMHCALRLK--RS 467 K +K + LD F+GE + ++AG+ + T P ++ ++ K + Sbjct: 155 KQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQG 214 Query: 466 GTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPG--HAKKVKNVTDHPIEGKRGR 293 G +PR+ELVE+GP +D + R + + EA K P K KNV + K GR Sbjct: 215 GKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGR 274 Query: 292 IYIPDQEVSKLTVTSNIKGLK 230 I++ Q++ KL T +KGLK Sbjct: 275 IHMGKQDLGKLQ-TRKMKGLK 294
>CTGE5_HUMAN (O15320) Cutaneous T-cell lymphoma-associated antigen 5 (cTAGE-5| protein) (cTAGE family member 5) (Meningioma-expressed antigen 6/11) (MEA6/MEA11) Length = 804 Score = 34.3 bits (77), Expect = 0.36 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Frame = -3 Query: 385 DSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEVSKL--TVTSNIKGLKRERRDA 212 D+ K A+K HA K+ N + +EG+R +IYI EV K +T +IK L+ E+ Sbjct: 306 DNPPKGALKKLIHAAKL-NASLKTLEGERNQIYIQLSEVDKTKEELTEHIKNLQTEQASL 364 Query: 211 KKNKEHSKKQ 182 + H + + Sbjct: 365 QSENTHFENE 374
>Y111_ENCCU (Q8STB5) Hypothetical protein ECU01_0110/ECU01_1500/ECU08_0040| Length = 592 Score = 32.7 bits (73), Expect = 1.0 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Frame = -3 Query: 415 LVLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIYIPDQEVSKLTVTSNIKG 236 L+L H++ + KE + KK KN+ I K + Q + + N+K Sbjct: 262 LLLDAHKEHGGDVTKELVMQMLLGKKGKNIDKRYIN-KVANVVKERQRRREREIEKNMKE 320 Query: 235 LKRERRDAK-----KNKEHSKKQKVGES 167 L R+ AK K+KE +K +K GES Sbjct: 321 LMRDEEKAKSKEKAKSKEKAKSKKKGES 348
>IWS1_MOUSE (Q8C1D8) IWS1-like protein| Length = 766 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -3 Query: 394 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 227 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 589 QELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 648 Query: 226 ERRDAKKNKEHSKKQKV----GESPE*PLEK 146 E R+ + ++ +++++ G++P LEK Sbjct: 649 EEREQRDLEQMPQRRRLSSTGGQTPRRDLEK 679
>IWS1_RAT (Q3SWT4) IWS1-like protein| Length = 764 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -3 Query: 394 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 227 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 588 QELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 647 Query: 226 ERRDAKKNKEHSKKQKV----GESPE*PLEK 146 E R+ + ++ +++++ G++P LEK Sbjct: 648 EEREQRDLEQMPQRRRMSSTGGQTPRRDLEK 678
>IWS1_HUMAN (Q96ST2) IWS1-like protein| Length = 819 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -3 Query: 394 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 227 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 642 QELPSVSQETLKHSGIGRAVMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTR 701 Query: 226 ERRDAKKNKEHSKKQKV----GESPE*PLEK 146 E R+ + ++ +++++ G++P LEK Sbjct: 702 EEREQRDLEQMPQRRRMNSTGGQTPRRDLEK 732
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 32.0 bits (71), Expect = 1.8 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -3 Query: 394 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 227 Q S+ +E +K G + V + HP E + + I + +TSN KG+ R Sbjct: 732 QELPSVSQETLKHSGIGRAVMYLYKHPKESRPNKDIAGKLINEWSRPIFGLTSNYKGMTR 791 Query: 226 ERRDAKKNKEHSKKQKV----GESPE*PLEK 146 E R+ + ++ +++++ G++P LEK Sbjct: 792 EEREQRDLEQMPQRRRMSSSGGQTPRRDLEK 822
>COX2_MYCPA (Q73YL5) Probable cytochrome c oxidase subunit 2 precursor (EC| 1.9.3.1) (Cytochrome c oxidase polypeptide II) (Cytochrome aa3 subunit 2) Length = 360 Score = 31.2 bits (69), Expect = 3.0 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Frame = -3 Query: 586 FKGEVVENLNLAGVDRIFVCTAISPTTVYMMHCALRLKRSGT--SIPRMELVEVGPSMDL 413 FK +V+ N +F I+ ++ HCA + GT S+ E+ V P+ Sbjct: 262 FKRDVIPNAEANNSIHVFQVEEINSPGAFVGHCA---EFCGTYHSMMNFEVRVVSPNDFK 318 Query: 412 VLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRI 290 + R S EA++A G + VT HP + KRG++ Sbjct: 319 AYLQQRMDGKS-NAEALQAIGQSPVA--VTTHPFDSKRGQL 356
>SYR_SULSO (Q97ZN1) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 625 Score = 30.8 bits (68), Expect = 4.0 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 28/184 (15%) Frame = -3 Query: 628 VEGLKHLKEMLLDHFKGEVVENLNLAGV--------DRIFVCTAISPTTVYMMHCALRLK 473 ++G + K LL +KGE++E + +AG+ IFV Y + + K Sbjct: 49 IKGNINEKAKLLQEYKGELIERIEVAGIYLNARLNLRNIFVSIFSKLDDSYGLEKIEKPK 108 Query: 472 R---SGTSIPRMELVEVGPSMDLVLRRHRQAADSLQKEAMKAPGHAKKVKNVTDHPIEGK 302 R TS + + +G + +L D+L + A+KA GH+ V+ + G+ Sbjct: 109 RIVVEHTSANPIHPLHIGHLRNTIL------GDALAR-ALKARGHSVNVRFYVND--TGR 159 Query: 301 RGRIYI----------PDQEVSK-------LTVTSNIKGLKRERRDAKKNKEHSKKQKVG 173 + + I P+ V K +T+ I +++ R + KK E ++KV Sbjct: 160 QVAVLIYGLKLLGFPDPEPNVKKDLWLGIIYAMTNVILEIRKLREELKKLSESEYREKVR 219 Query: 172 ESPE 161 E E Sbjct: 220 ELDE 223
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 30.4 bits (67), Expect = 5.2 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 8/91 (8%) Frame = -3 Query: 394 QAADSLQKEAMKAPGHAKKVKNVTDHPIEGKRGRIY----IPDQEVSKLTVTSNIKGLKR 227 Q S+ +E +K G + + + HP E + + I + +TSN KG+ R Sbjct: 659 QELPSVSQETLKHSGIGRAIMYLYKHPKESRPNKDIAGKLINEWSRPIFGLTSNYKGMTR 718 Query: 226 ERRDAKKNKEHSKKQKV----GESPE*PLEK 146 E R+ + ++ +++++ G++P L+K Sbjct: 719 EEREQRDIEQMPQRRRMSSSGGQTPRRDLDK 749
>SYV_STRAW (Q82CA3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 874 Score = 30.0 bits (66), Expect = 6.7 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Frame = -3 Query: 439 VEVGPSMDLVLRRHRQAADSLQKEAMKAPGHAKK-----VKNVTDHPIEGKRGRIYIPDQ 275 +++ ++D+V R R A D E KA AK + DH ++ RGR+ D+ Sbjct: 800 LDLSGTIDIVAERKRLAKDLAAAEKEKAQAGAKLGNEAFLAKAPDHVVDKIRGRLAKADE 859 Query: 274 EVSKL 260 +++++ Sbjct: 860 DIARI 864 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,448,149 Number of Sequences: 219361 Number of extensions: 1869684 Number of successful extensions: 4665 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4653 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
