ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20o09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS143_ARATH (P42036) 40S ribosomal protein S14-3 40 0.007
2RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2) 37 0.057
3RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2 37 0.057
4RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1 36 0.097
5RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1) 35 0.28
6RS14_LUPLU (O22584) 40S ribosomal protein S14 33 0.82
7G10_BRARE (Q567Z7) Protein G10 homolog 30 7.0

>RS143_ARATH (P42036) 40S ribosomal protein S14-3|
          Length = 150

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215
           KRKT+EPK  NVT+ P VREG+ VF +    A+
Sbjct: 3   KRKTKEPKVENVTLGPAVREGEQVFGVVHVFAS 35



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>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)|
          Length = 150

 Score = 37.0 bits (84), Expect = 0.057
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = -3

Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215
           ++KTREPK  NV + P VREG+HVF +A   A+
Sbjct: 4   RKKTREPKEENV-LGPAVREGEHVFGVAHIFAS 35



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>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2|
          Length = 150

 Score = 37.0 bits (84), Expect = 0.057
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -3

Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215
           KRKT+EPK   VT+ P VREG+ VF +    A+
Sbjct: 3   KRKTKEPKVETVTLGPSVREGEQVFGVVHIFAS 35



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>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1|
          Length = 150

 Score = 36.2 bits (82), Expect = 0.097
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -3

Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215
           KRKT+EPK   VT+ P VREG+ VF +    A+
Sbjct: 3   KRKTKEPKVDVVTLGPSVREGEQVFGVVHIFAS 35



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>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)|
          Length = 149

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215
           +RKTREPK  NV + P VREG+ VF +A   A+
Sbjct: 3   RRKTREPKEENV-LGPTVREGEFVFGVAHIFAS 34



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>RS14_LUPLU (O22584) 40S ribosomal protein S14|
          Length = 150

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 313 KRKTREPKWGNVTVEPVVREGDHVFDIAQSLAT 215
           +RK R+ K   VT+ P V +G+HVF +A+  A+
Sbjct: 3   RRKVRDTKEETVTLGPAVSDGEHVFGVARIFAS 35



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>G10_BRARE (Q567Z7) Protein G10 homolog|
          Length = 144

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -3

Query: 325 MCKFKRKTREPKWGNVTVEPVVREGDHVFDIAQSLATEEGMLLFCLFPVLTMVAQRVRHV 146
           M K KR  + P  G   VEP + E D     A++   E    +  L+P+  +  QR R++
Sbjct: 1   MPKVKRSRKPPPDGWELVEPTLDELDQKMREAETEPHEGKRKVESLWPIFRLHHQRSRYI 60

Query: 145 FHL 137
           F L
Sbjct: 61  FDL 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,625,077
Number of Sequences: 219361
Number of extensions: 2286702
Number of successful extensions: 5936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5933
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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