ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags20o08 |
|---|---|
| Clone Library Name | barley_pub |
>UXS1_XENTR (Q6DF08) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 421 Score = 60.8 bits (146), Expect(3) = 5e-19 Identities = 27/47 (57%), Positives = 37/47 (78%) Frame = -1 Query: 657 QAIRGEALTVQKPGTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 QA++GE LTV G QTR+F YV+D+VNGL+ LMN + + P+N+GNP Sbjct: 281 QALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP 327 Score = 48.1 bits (113), Expect(3) = 5e-19 Identities = 24/57 (42%), Positives = 33/57 (57%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 308 K+L+ ++ DDP++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 340 KQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396 Score = 25.0 bits (53), Expect(3) = 5e-19 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -3 Query: 694 LNDGRVVSNFI 662 +NDGRVVSNFI Sbjct: 269 MNDGRVVSNFI 279
>UXS1_RAT (Q5PQX0) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 61.6 bits (148), Expect(3) = 6e-19 Identities = 27/47 (57%), Positives = 38/47 (80%) Frame = -1 Query: 657 QAIRGEALTVQKPGTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 QA++GE LTV G+QTR+F YV+D+VNGL+ LMN + + P+N+GNP Sbjct: 280 QALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP 326 Score = 47.0 bits (110), Expect(3) = 6e-19 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 308 K L+ + DDP++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 339 KNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395 Score = 25.0 bits (53), Expect(3) = 6e-19 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -3 Query: 694 LNDGRVVSNFI 662 +NDGRVVSNFI Sbjct: 268 MNDGRVVSNFI 278
>UXS1_PONPY (Q5R885) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 61.6 bits (148), Expect(3) = 6e-19 Identities = 27/47 (57%), Positives = 38/47 (80%) Frame = -1 Query: 657 QAIRGEALTVQKPGTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 QA++GE LTV G+QTR+F YV+D+VNGL+ LMN + + P+N+GNP Sbjct: 280 QALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP 326 Score = 47.0 bits (110), Expect(3) = 6e-19 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 308 K L+ + DDP++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 339 KNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395 Score = 25.0 bits (53), Expect(3) = 6e-19 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -3 Query: 694 LNDGRVVSNFI 662 +NDGRVVSNFI Sbjct: 268 MNDGRVVSNFI 278
>UXS1_MOUSE (Q91XL3) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 61.6 bits (148), Expect(3) = 6e-19 Identities = 27/47 (57%), Positives = 38/47 (80%) Frame = -1 Query: 657 QAIRGEALTVQKPGTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 QA++GE LTV G+QTR+F YV+D+VNGL+ LMN + + P+N+GNP Sbjct: 280 QALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP 326 Score = 47.0 bits (110), Expect(3) = 6e-19 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 308 K L+ + DDP++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 339 KNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395 Score = 25.0 bits (53), Expect(3) = 6e-19 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -3 Query: 694 LNDGRVVSNFI 662 +NDGRVVSNFI Sbjct: 268 MNDGRVVSNFI 278
>UXS1_HUMAN (Q8NBZ7) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UGD) (UXS-1) Length = 420 Score = 61.6 bits (148), Expect(3) = 6e-19 Identities = 27/47 (57%), Positives = 38/47 (80%) Frame = -1 Query: 657 QAIRGEALTVQKPGTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 QA++GE LTV G+QTR+F YV+D+VNGL+ LMN + + P+N+GNP Sbjct: 280 QALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNP 326 Score = 47.0 bits (110), Expect(3) = 6e-19 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERL 308 K L+ + DDP++RKPDI KAK +L WEP V L +GL FR+ L Sbjct: 339 KNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395 Score = 25.0 bits (53), Expect(3) = 6e-19 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -3 Query: 694 LNDGRVVSNFI 662 +NDGRVVSNFI Sbjct: 268 MNDGRVVSNFI 278
>UXS1_BRARE (Q6GMI9) UDP-glucuronic acid decarboxylase 1 (EC 4.1.1.35)| (UDP-glucuronate decarboxylase 1) (UXS-1) Length = 418 Score = 63.9 bits (154), Expect(3) = 1e-18 Identities = 28/47 (59%), Positives = 39/47 (82%) Frame = -1 Query: 657 QAIRGEALTVQKPGTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 QA++GEALTV G+QTR+F YV+D+VNGL+ LMN + + P+N+GNP Sbjct: 278 QALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNP 324 Score = 43.9 bits (102), Expect(3) = 1e-18 Identities = 20/46 (43%), Positives = 27/46 (58%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGL 341 K L+ + DDP++R+PDI KAK +L WEP V L +GL Sbjct: 337 KSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGL 382 Score = 25.0 bits (53), Expect(3) = 1e-18 Identities = 10/11 (90%), Positives = 11/11 (100%) Frame = -3 Query: 694 LNDGRVVSNFI 662 +NDGRVVSNFI Sbjct: 266 MNDGRVVSNFI 276
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 35.0 bits (79), Expect(2) = 8e-05 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 618 GTQTRSFCYVADMVNGLMKLMNGDNTGPINIGN 520 G QTRSF ++ + V G+++L D P+NIG+ Sbjct: 233 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 265 Score = 30.8 bits (68), Expect(2) = 8e-05 Identities = 20/51 (39%), Positives = 27/51 (52%) Frame = -3 Query: 430 PDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAKA*G 278 P+ R R D T KE L W P + L+DGL + +E+L +K KA G Sbjct: 294 PEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQL---EKEKAEG 341
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 35.0 bits (79), Expect(2) = 1e-04 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 618 GTQTRSFCYVADMVNGLMKLMNGDNTGPINIGN 520 G QTRSF ++ + V G+++L D P+NIG+ Sbjct: 240 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 272 Score = 30.0 bits (66), Expect(2) = 1e-04 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 430 PDDPRQRKPDITKAKEVLDWEPKVVLRDGL 341 P+ R R D T KE L W P + L+DGL Sbjct: 301 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGL 330
>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man| 3,5-epimerase) Length = 377 Score = 35.0 bits (79), Expect(2) = 0.001 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = -1 Query: 618 GTQTRSFCYVADMVNGLMKLMNGDNTGPINIGN 520 G QTRSF ++ + V G+++L D P+NIG+ Sbjct: 239 GLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 271 Score = 26.9 bits (58), Expect(2) = 0.001 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -3 Query: 430 PDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAKA*G 278 P+ R R D KE L W P + L++GL + +E++ +K KA G Sbjct: 300 PEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQI---EKEKAKG 347
>ARNA_SALTI (Q8Z540) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 35.8 bits (81), Expect = 0.13 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 290 D RKP I A+ LDWEP + +RD + D F + + ++A Sbjct: 615 DVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>ARNA_SALPA (Q5PNA6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 35.8 bits (81), Expect = 0.13 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 290 D RKP I A+ LDWEP + +RD + D F + + ++A Sbjct: 615 DVAHRKPSIDNARRCLDWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>ARNA_PSEAE (Q9HY63) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 662 Score = 33.5 bits (75), Expect = 0.64 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAKA 284 D RKP I A+ +LDW+P + LR+ + D F ++A+A Sbjct: 616 DVAHRKPSIDNARRLLDWQPTIELRETIGKTLDFFLHEALREREAQA 662
>EXOB_AZOBR (Q59083) UDP-glucose 4-epimerase (EC 5.1.3.2) (UDP-galactose| 4-epimerase) (Galactowaldenase) Length = 348 Score = 33.5 bits (75), Expect = 0.64 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = -3 Query: 493 LLRT*KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLV 338 ++RT +E+ +V T + P DP Q + +E L W PK DG+V Sbjct: 270 VVRTLEEVSGEQVPATFADRRPGDPPQLVAGADRIREQLGWVPKHDRLDGIV 321
>ARNA_SALCH (P0C0R6) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 33.5 bits (75), Expect = 0.64 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 290 D RKP I A+ L WEP + +RD + D F + V ++A Sbjct: 615 DVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDVAERA 659
>ARNA_SALTY (O52325) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 33.1 bits (74), Expect = 0.83 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKA 290 D RKP I A+ L WEP + +RD + D F + + ++A Sbjct: 615 DVAHRKPSIDNARRCLGWEPSIAMRDTVEETLDFFLRSVDIAERA 659
>ARNA_ECOL6 (Q8FFM1) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 32.3 bits (72), Expect = 1.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRD 347 D RKP I A+ LDWEPK+ +++ Sbjct: 615 DVEHRKPSIRNARRCLDWEPKIDMQE 640
>Y4NL_RHISN (P55584) Hypothetical 38.7 kDa protein y4nL| Length = 356 Score = 31.2 bits (69), Expect = 3.2 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = -3 Query: 403 DITKAKEVLDWEPKVVLRDGL 341 DITKA++VL + PK+ LR+G+ Sbjct: 322 DITKARKVLGYAPKIALREGM 342
>ARNA_SHIFL (Q83QT8) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 31.2 bits (69), Expect = 3.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRD 347 D RKP I A LDWEPK+ +++ Sbjct: 615 DVEHRKPSIRNAHRCLDWEPKIDMQE 640
>ARNA_ECOLI (P77398) Bifunctional polymyxin resistance arnA protein (Polymyxin| resistance protein pmrI) [Includes: UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1 Length = 660 Score = 31.2 bits (69), Expect = 3.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRD 347 D RKP I A LDWEPK+ +++ Sbjct: 615 DVEHRKPSIRNAHRCLDWEPKIDMQE 640
>ARNA_ECO57 (Q8XDZ3) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 660 Score = 31.2 bits (69), Expect = 3.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRD 347 D RKP I A LDWEPK+ +++ Sbjct: 615 DVEHRKPSIRNAHHCLDWEPKIDMQE 640
>GALE_LACHE (Q7WTB1) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)| (UDP-galactose 4-epimerase) Length = 330 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -3 Query: 493 LLRT*KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPK 362 +L + K++ ++ TM DP D TKA+ VL W+PK Sbjct: 262 ILESAKKVTGIDIPYTMGPRRGGDPDSLVADSTKARTVLGWKPK 305
>YFCH_ECOLI (P77775) Hypothetical UPF0105 protein yfcH| Length = 297 Score = 30.8 bits (68), Expect = 4.1 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = -1 Query: 618 GTQTRSFCYVADMVNGLMKLMNGDNTGPINIGNP 517 G Q ++ ++ DMVNG++ L++ + GP N+ +P Sbjct: 192 GRQYLAWIHIDDMVNGILWLLDNELRGPFNMVSP 225
>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 1) Length = 328 Score = 30.8 bits (68), Expect = 4.1 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = -3 Query: 478 KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVP 299 KE++ + + + PD ++ D +K +E + W+PKV L++GLV + E + Sbjct: 268 KEVVGFQGKLVWDSSKPDGTPRKLMDSSKIQE-MGWKPKVPLKEGLVETYKWYVENVISA 326 Query: 298 KK 293 KK Sbjct: 327 KK 328
>RFBE_SALTI (P14169) CDP-paratose 2-epimerase (EC 5.1.3.10) (CDP-tyvelose| 2-epimerase) Length = 338 Score = 30.8 bits (68), Expect = 4.1 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = -3 Query: 493 LLRT*KELINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMED 326 L + ++ N ++ T D R DI K +DW PKV +DG+ M D Sbjct: 278 LFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 333
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.8 bits (68), Expect = 4.1 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -1 Query: 375 TGSPRSSYVTAWCSWRTTSGSVWQCPRRPRPKATSLR-LAYITNLPEHTHSWVGSSIFV 202 T SP +S+ T CS T SG +WQC P P S++ A+I+ E + G +V Sbjct: 394 TYSPGTSFNTT-CSSCTCSGGLWQCQDLPCPGTCSVQGGAHISTYDEKLYDLHGDCSYV 451
>GMD1_ARATH (Q9SNY3) GDP-mannose 4,6 dehydratase 1 (EC 4.2.1.47) (GDP-D-mannose| dehydratase 1) (GMD 1) Length = 361 Score = 30.4 bits (67), Expect = 5.4 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = -3 Query: 430 PDDPRQRKPDITKAKEVLDWEPKVVLRDGLVLMEDDFRERLAVPKKAK 287 P + K D +KAKE+L W+PKV + +M D E L + K+ K Sbjct: 303 PTEVDNLKGDASKAKEMLGWKPKVGFEKLVKMMVD---EDLELAKREK 347
>ARNA_PSEF5 (Q4KC82) Bifunctional polymyxin resistance arnA protein [Includes:| UDP-glucuronic acid decarboxylase (EC 4.1.1.-) (UDP-GlcUA decarboxylase) (ArnAFT); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.-) (UDP-L-Ara4N formyltransferase Length = 668 Score = 30.0 bits (66), Expect = 7.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 424 DPRQRKPDITKAKEVLDWEPKVVLRD 347 D RKP I AK +L+WEP V + + Sbjct: 617 DVEHRKPSIDNAKRLLNWEPTVEMSE 642
>RECO_CHLMU (Q9PJS3) DNA repair protein recO (Recombination protein O)| Length = 234 Score = 30.0 bits (66), Expect = 7.1 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 10/77 (12%) Frame = -1 Query: 402 TSQRQRRFLTGSPRSSYVTAWCSWRTTSGS----------VWQCPRRPRPKATSLRLAYI 253 T + R+ L G ++ + T S+R + WQ +P P+ SL L ++ Sbjct: 62 TPPKMRKVLQGELKNPFTTIKNSYRLLQSTGKMIQAILKTQWQ--EKPSPQLFSLFLNFL 119 Query: 252 TNLPEHTHSWVGSSIFV 202 +PE H + SS+F+ Sbjct: 120 QRIPETPHPYFFSSMFL 136
>FCL2_ORYSA (Q67WR5) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)| (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase 2) Length = 347 Score = 26.6 bits (57), Expect(2) = 7.2 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = -3 Query: 472 LINPEVTVTMTENTPDDPRQRKPDITKAKEVLDWEPKVVLRDGL 341 ++ E V P+ +R D + ++ L WEP+V LRDG+ Sbjct: 286 VVGYEGVVAWDAARPEGVARRVVDSGRMRK-LGWEPRVALRDGI 328 Score = 21.9 bits (45), Expect(2) = 7.2 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 533 LTLGTQGEFTMLELAENVKGV 471 + +G+ E T+ ELAE V+GV Sbjct: 266 VNVGSGEEVTVRELAEAVRGV 286
>TR2M_AGRTU (P0A3V3) Tryptophan 2-monooxygenase (EC 1.13.12.3)| Length = 755 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 12/61 (19%) Frame = -3 Query: 400 ITKAKEVLDWEPKVVLRDGLVLM----EDDFRERLAVPKKAK--------A*GHFPAFGV 257 I KA LD+EP+ GLVL+ EDD + LAVP K + FPAF Sbjct: 586 IAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERLCLLRDAISRSFPAFAQ 645 Query: 256 H 254 H Sbjct: 646 H 646
>TR2M_AGRT4 (P0A3V2) Tryptophan 2-monooxygenase (EC 1.13.12.3)| Length = 755 Score = 29.6 bits (65), Expect = 9.2 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 12/61 (19%) Frame = -3 Query: 400 ITKAKEVLDWEPKVVLRDGLVLM----EDDFRERLAVPKKAK--------A*GHFPAFGV 257 I KA LD+EP+ GLVL+ EDD + LAVP K + FPAF Sbjct: 586 IAKAVYCLDYEPQDPNGKGLVLISYTWEDDSHKLLAVPDKKERLCLLRDAISRSFPAFAQ 645 Query: 256 H 254 H Sbjct: 646 H 646 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,936,438 Number of Sequences: 219361 Number of extensions: 2174752 Number of successful extensions: 5193 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 5005 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5192 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
