| Clone Name | rbags20o08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete cds Length = 1433 Score = 1322 bits (667), Expect = 0.0 Identities = 695/699 (99%), Gaps = 4/699 (0%) Strand = Plus / Minus Query: 1 cccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggctaaaacatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1405 cccaaaaatggcaccaacgttgctataattgatttagggaagtgcataggctaaaacatt 1346 Query: 61 aggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 aggaccacaagttccgcaaaaagcgggagtaatacaaacagccaggccttgtatataaag 1286 Query: 121 tttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 tttctaataatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactca 1226 Query: 181 aattccgtaacgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 aattccgtaacgaaacacagcaacgaatattgacgaacccacccaactatgagtatgctc 1166 Query: 241 tggcaaattggtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 tggcaaattggtgatgtacgccaaacgcagggaagtggccttaggccttggccttcttgg 1106 Query: 301 gcactgccaaacgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 gcactgccaaacgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacga 1046 Query: 361 ccttgggctcccagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 ccttgggctcccagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgag 986 Query: 421 ggtcatcaggagtgttctcagtcatcgtcactgtcacctctgggttgatcaactcctttc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 985 ggtcatcaggagtgttctcagtcatcgtcactgtcacctctgggttgatcaactcc-ttc 927 Query: 481 acgttctcagcaagttccagcatggtgaattcaccctgggttcccaatgttaatgggtcc 540 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 926 acgttctcagcaagttccagcatggtgaattca-cctgggttcccaatgttaatgggtcc 868 Query: 541 agtgttgtctccattcatcagcttcataagaccattgaccatatcagcaacgtagcagaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 agtgttgtctccattcatcagcttcataagaccattgaccatatcagcaacgtagcagaa 808 Query: 601 gctcctagtctgtgttcctggcttctggacagtcagggcttcaccacgtatggcctgagc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 gctcctagtctgtgttcctggcttctggacagtcagggcttcaccacgtatggcctgagc 748 Query: 661 aaatgaagttactaacaacacggccatcattcaatgttc 699 |||||||||||||||||||||||||||| ||||||||| Sbjct: 747 -aatgaagttactaacaacacggccatca-tcaatgttc 711
>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene) Length = 1562 Score = 458 bits (231), Expect = e-125 Identities = 376/419 (89%), Gaps = 4/419 (0%) Strand = Plus / Minus Query: 281 ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 340 ||||||||| | || ||||||||| |||| |||||||||||||| |||||||||||||| Sbjct: 1291 ttaggccttagtctccttgggcacagccaggcgctcccggaagtcatcctccatgagcac 1232 Query: 341 caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 400 |||||||||||| || |||||||| |||||||| | ||||| ||||| ||||||||||| Sbjct: 1231 caagccgtcacgcagaacgaccttaggctcccaccccagaacttccttcgcctttgtgat 1172 Query: 401 gtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctc 460 ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 1171 gtctggcttcctctggcgaggatcatcaggagtgttctcggtcatcgtcactgtcacctc 1112 Query: 461 tgggttgatcaactcctttcacgttctcagcaagttccagcatggtgaattcaccctggg 520 |||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||| Sbjct: 1111 tgggttgatcaact-ctttcactttctcagcaagttccagcatggtaaattca-cctggg 1054 Query: 521 ttcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgacc 580 || || | ||||| ||||||||||||| ||||||||||||||| |||||||||| ||| Sbjct: 1053 ttgcccaaattaatcggtccagtgttgtttccattcatcagcttaataagaccatcaacc 994 Query: 581 atatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagggct 640 ||||| || |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 993 atatcggcgacgtagcagaagctcctagtctgtgttcctggcttctggacagtcaagggg 934 Query: 641 tcaccacgtatggcctgagcaaatgaagttactaacaacacggccatcattcaatgttc 699 |||||||| | |||||||| ||||||||| ||||||||||| |||||| ||||||||| Sbjct: 933 tcaccacgcacagcctgagc-aatgaagttgctaacaacacgcccatca-tcaatgttc 877 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 128 taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 187 |||||||||||||||| |||||||||| | |||| | |||||||||||||||||||||| Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360 Query: 188 taacgaaa 195 ||| |||| Sbjct: 1359 taatgaaa 1352 Score = 46.1 bits (23), Expect = 0.16 Identities = 61/71 (85%), Gaps = 2/71 (2%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagtt 73 |||| |||||||||| |||||||||| || |||| |||| |||||| || |||||||||| Sbjct: 1527 caacattgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagtt 1469 Query: 74 ccgcaaaaagc 84 | | ||||||| Sbjct: 1468 ctgtaaaaagc 1458
>gb|AY104952.1| Zea mays PCO092342 mRNA sequence Length = 1825 Score = 404 bits (204), Expect = e-109 Identities = 360/408 (88%), Gaps = 3/408 (0%) Strand = Plus / Minus Query: 281 ttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagcac 340 ||||||||||| ||||||||||| |||| ||||||||||| || |||||||||||||| Sbjct: 1535 ttaggccttggttttcttgggcacggccaggcgctcccggaaatcatcctccatgagcac 1476 Query: 341 caagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtgat 400 ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| ||||| Sbjct: 1475 caagccgtccttcaggacgatcttgggctcccaccctagaacttcctttgccttggtgat 1416 Query: 401 gtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctc 460 ||| |||||||||||||| || ||||||||||||||||| |||||||||||||| | || Sbjct: 1415 gtccggcttcctctggcggggatcatcaggagtgttctcggtcatcgtcactgttatatc 1356 Query: 461 tgggttgatcaactcctttcacgttctcagcaagttccagcatggtgaattcaccctggg 520 |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| Sbjct: 1355 tgggttaatcaactcctt-cacattctcagcaagttccagcatggtgaattcacc-tggg 1298 Query: 521 ttcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgacc 580 ||||| | |||||| ||||||||||||| ||| ||||||||| | |||||||||| ||| Sbjct: 1297 ttccccaagttaatcggtccagtgttgtttccgttcatcagcctaataagaccatcaacc 1238 Query: 581 atatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagggct 640 ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct: 1237 atatcggcgacatagcagaagctcctagtctgtgttcctggcttctggacagtaaggggt 1178 Query: 641 tcaccacgtatggcctgagcaaatgaagttactaacaacacggccatc 688 || ||||| | |||||||| ||||||||| ||||||||||||||||| Sbjct: 1177 tcgccacgcacagcctgagc-aatgaagttgctaacaacacggccatc 1131 Score = 54.0 bits (27), Expect = 6e-04 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 180 ||||||| |||||||| |||||| ||| ||| ||||| || | ||||||||||||||| Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625 Query: 181 aattccgtaacgaaa 195 |||||||||| |||| Sbjct: 1624 aattccgtaatgaaa 1610
>dbj|AB079064.1| Oryza sativa (japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic acid decarboxylase, complete cds Length = 1053 Score = 396 bits (200), Expect = e-107 Identities = 345/388 (88%), Gaps = 4/388 (1%) Strand = Plus / Minus Query: 312 cgctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctcc 371 ||||||||||| || || ||||||||||||||||| ||||| || |||| |||||||||| Sbjct: 1022 cgctcccggaaatcatcttccatgagcaccaagccatcacgcagaacgatcttgggctcc 963 Query: 372 cagtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcagga 431 || | | ||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||| Sbjct: 962 caccccaaaacttcctttgcctttgtaatgtctggcttcctctgacgaggatcatcagga 903 Query: 432 gtgttctcagtcatcgtcactgtcacctctgggttgatcaactcctttcacgttctcagc 491 |||||||||||||| || || || ||||||||||||||||||||| ||||| |||||||| Sbjct: 902 gtgttctcagtcattgtgacggtaacctctgggttgatcaactcc-ttcacattctcagc 844 Query: 492 aagttccagcatggtgaattcaccctgggttcccaatgttaatgggtccagtgttgtctc 551 |||||||||||||||||||||| |||||||| || | ||||| |||||||||||||| | Sbjct: 843 aagttccagcatggtgaattca-cctgggtttcccaaattaattggtccagtgttgtccc 785 Query: 552 cattcatcagcttcataagaccattgaccatatcagcaacgtagcagaagctcctagtct 611 | ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 784 cgttcatcagcttaataagaccattaaccatgtcagcaacatagcagaagctcctagttt 725 Query: 612 gtgttcctggcttctggacagtcagggcttcaccacgtatggcctgagcaaatgaagtta 671 |||||||||||||||| |||||||||| || ||||||| ||||||||| |||||||||| Sbjct: 724 gtgttcctggcttctgaacagtcaggggctcgccacgtacggcctgagc-aatgaagtta 666 Query: 672 ctaacaacacggccatcattcaatgttc 699 ||||||||||| |||||| ||||||||| Sbjct: 665 ctaacaacacgcccatca-tcaatgttc 639
>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full insert sequence Length = 1811 Score = 396 bits (200), Expect = e-107 Identities = 369/420 (87%), Gaps = 4/420 (0%) Strand = Plus / Minus Query: 280 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 339 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 1542 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1483 Query: 340 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 399 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 1482 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1423 Query: 400 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 459 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 1422 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 1363 Query: 460 ctgggttgatcaactcctttcacgttctcagcaagttccagcatggtgaattcaccctgg 519 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 1362 ctgggttgatcaactcc-ttcacattctcagcaagttccagcatggtgaattca-cctgg 1305 Query: 520 gttcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgac 579 ||| || | ||||| |||||||||||||| || ||||||||||| ||||||||||| || Sbjct: 1304 gtttcccaaattaattggtccagtgttgtccccgttcatcagcttaataagaccattaac 1245 Query: 580 catatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagggc 639 ||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 1244 catgtcagcaacatagcagaagctcctagtttgtgttcctggcttctgaacagtcagggg 1185 Query: 640 ttcaccacgtatggcctgagcaaatgaagttactaacaacacggccatcattcaatgttc 699 || ||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| Sbjct: 1184 ctcgccacgtacggcctgagc-aatgaagttactaacaacacgcccatca-tcaatgttc 1127 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagg 38 |||| ||||||||||||||||||| Sbjct: 1797 caacattgctataattgatttagg 1774 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaagtgaacgacaaaggtgta 161 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653
>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full insert sequence Length = 1411 Score = 396 bits (200), Expect = e-107 Identities = 369/420 (87%), Gaps = 4/420 (0%) Strand = Plus / Minus Query: 280 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 339 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 1153 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 1094 Query: 340 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 399 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 1093 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 1034 Query: 400 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 459 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 1033 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 974 Query: 460 ctgggttgatcaactcctttcacgttctcagcaagttccagcatggtgaattcaccctgg 519 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 973 ctgggttgatcaactcc-ttcacattctcagcaagttccagcatggtgaattca-cctgg 916 Query: 520 gttcccaatgttaatgggtccagtgttgtctccattcatcagcttcataagaccattgac 579 ||| || | ||||| |||||||||||||| || ||||||||||| ||||||||||| || Sbjct: 915 gtttcccaaattaattggtccagtgttgtccccgttcatcagcttaataagaccattaac 856 Query: 580 catatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagggc 639 ||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 855 catgtcagcaacatagcagaagctcctagtttgtgttcctggcttctgaacagtcagggg 796 Query: 640 ttcaccacgtatggcctgagcaaatgaagttactaacaacacggccatcattcaatgttc 699 || ||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||| Sbjct: 795 ctcgccacgtacggcctgagc-aatgaagttactaacaacacgcccatca-tcaatgttc 738 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagg 38 |||| ||||||||||||||||||| Sbjct: 1408 caacattgctataattgatttagg 1385 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaagtgaacgacaaaggtgta 161 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264
>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence Length = 958 Score = 371 bits (187), Expect = 2e-99 Identities = 341/387 (88%), Gaps = 4/387 (1%) Strand = Plus / Minus Query: 313 gctcccggaagtcgtcctccatgagcaccaagccgtcacgtaggacgaccttgggctccc 372 |||||||||| || ||||||||||||||||||||||| | |||| || |||||||||| Sbjct: 787 gctcccggaaatcatcctccatgagcaccaagccgtcccccaggaagattttgggctccc 728 Query: 373 agtcaagaacctcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggag 432 | | | ||| ||||| |||||||||| || ||||||||||| || ||||||||||||| Sbjct: 727 atcccaaaacttccttcccctttgtgatatccggcttcctctgacgggggtcatcaggag 668 Query: 433 tgttctcagtcatcgtcactgtcacctctgggttgatcaactcctttcacgttctcagca 492 ||||||| ||||| ||||||||||| |||||||||||||||||| ||||| ||||||||| Sbjct: 667 tgttctcggtcattgtcactgtcacatctgggttgatcaactcc-ttcacattctcagca 609 Query: 493 agttccagcatggtgaattcaccctgggttcccaatgttaatgggtccagtgttgtctcc 552 ||||||||||||||||||||| ||||||||||| | |||||| |||||||| |||| ||| Sbjct: 608 agttccagcatggtgaattca-cctgggttccccaagttaatcggtccagtcttgtttcc 550 Query: 553 attcatcagcttcataagaccattgaccatatcagcaacgtagcagaagctcctagtctg 612 |||||||||||| |||||||||| |||||||| ||||| |||||||| ||||||||||| Sbjct: 549 attcatcagcttaataagaccatcaaccatatcggcaacatagcagaaactcctagtctg 490 Query: 613 tgttcctggcttctggacagtcagggcttcaccacgtatggcctgagcaaatgaagttac 672 |||||||||| ||||||||||||||| ||||| || | |||||||| ||||||||| | Sbjct: 489 tgttcctggcctctggacagtcaggggctcaccgcgcacagcctgagc-aatgaagttgc 431 Query: 673 taacaacacggccatcattcaatgttc 699 ||||||||||||||||| ||||||||| Sbjct: 430 taacaacacggccatca-tcaatgttc 405 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 171 ttggaactcaaattccgtaacgaaa 195 |||||||||||||||||||| |||| Sbjct: 921 ttggaactcaaattccgtaatgaaa 897
>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full insert sequence Length = 472 Score = 172 bits (87), Expect = 1e-39 Identities = 171/199 (85%) Strand = Plus / Minus Query: 280 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 339 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 207 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 148 Query: 340 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 399 ||||||| ||||| || |||| | |||||||||| | | |||||||||||||||||| | Sbjct: 147 ccaagccatcacgcagaacgatcctgggctcccaccccaaaacctcctttgcctttgtaa 88 Query: 400 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 459 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 87 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 28 Query: 460 ctgggttgatcaactcctt 478 ||||||||||||||||||| Sbjct: 27 ctgggttgatcaactcctt 9 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagg 38 |||| ||||||||||||||||||| Sbjct: 462 caacattgctataattgatttagg 439 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaagtgaacgacaaaggtgta 161 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 280 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 339 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 9412292 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9412233 Query: 340 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 399 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 9412232 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9412173 Query: 400 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 459 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 9412172 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 9412113 Query: 460 ctgggttgatcaact 474 ||||||||||||||| Sbjct: 9412112 ctgggttgatcaact 9412098 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 578 accatatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagg 637 ||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 9411692 accatgtcagcaacatagcagaagctcctagtttgtgttcctggcttctgaacagtcagg 9411633 Query: 638 g 638 | Sbjct: 9411632 g 9411632 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 478 ttcacgttctcagcaagttccagcatggtgaattcacc 515 ||||| |||||||||||||||||||||||||||||||| Sbjct: 9412011 ttcacattctcagcaagttccagcatggtgaattcacc 9411974 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 530 ttaatgggtccagtgttgtctccattcatcagcttcataagaccatt 576 ||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 9411835 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9411789 Score = 58.0 bits (29), Expect = 4e-05 Identities = 49/53 (92%), Gaps = 2/53 (3%) Strand = Plus / Minus Query: 647 cgtatggcctgagcaaatgaagttactaacaacacggccatcattcaatgttc 699 |||| ||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct: 9411539 cgtacggcctgagcaa-tgaagttactaacaacacgcccatca-tcaatgttc 9411489 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagg 38 |||| ||||||||||||||||||| Sbjct: 9412547 caacattgctataattgatttagg 9412524 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaagtgaacgacaaaggtgta 161 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403
>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence Length = 187589 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 280 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 339 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 109692 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 109633 Query: 340 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 399 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 109632 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 109573 Query: 400 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 459 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 109572 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 109513 Query: 460 ctgggttgatcaact 474 ||||||||||||||| Sbjct: 109512 ctgggttgatcaact 109498 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 578 accatatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagg 637 ||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 109092 accatgtcagcaacatagcagaagctcctagtttgtgttcctggcttctgaacagtcagg 109033 Query: 638 g 638 | Sbjct: 109032 g 109032 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 478 ttcacgttctcagcaagttccagcatggtgaattcacc 515 ||||| |||||||||||||||||||||||||||||||| Sbjct: 109411 ttcacattctcagcaagttccagcatggtgaattcacc 109374 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 530 ttaatgggtccagtgttgtctccattcatcagcttcataagaccatt 576 ||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 109235 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 109189 Score = 58.0 bits (29), Expect = 4e-05 Identities = 49/53 (92%), Gaps = 2/53 (3%) Strand = Plus / Minus Query: 647 cgtatggcctgagcaaatgaagttactaacaacacggccatcattcaatgttc 699 |||| ||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct: 108939 cgtacggcctgagcaa-tgaagttactaacaacacgcccatca-tcaatgttc 108889 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagg 38 |||| ||||||||||||||||||| Sbjct: 109947 caacattgctataattgatttagg 109924 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaagtgaacgacaaaggtgta 161 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 2e-37 Identities = 167/195 (85%) Strand = Plus / Minus Query: 280 cttaggccttggccttcttgggcactgccaaacgctcccggaagtcgtcctccatgagca 339 ||||||||| | ||||||||||||| | ||||||||||| || || |||||||||| Sbjct: 9410413 cttaggcctggttcttcttgggcacttggaggcgctcccggaaatcatcttccatgagca 9410354 Query: 340 ccaagccgtcacgtaggacgaccttgggctcccagtcaagaacctcctttgcctttgtga 399 ||||||| ||||| || |||| |||||||||||| | | ||| |||||||||||||| | Sbjct: 9410353 ccaagccatcacgcagaacgatcttgggctcccaccccaaaacttcctttgcctttgtaa 9410294 Query: 400 tgtcaggcttcctctggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacct 459 |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||| Sbjct: 9410293 tgtctggcttcctctgacgaggatcatcaggagtgttctcagtcattgtgacggtaacct 9410234 Query: 460 ctgggttgatcaact 474 ||||||||||||||| Sbjct: 9410233 ctgggttgatcaact 9410219 Score = 89.7 bits (45), Expect = 1e-14 Identities = 57/61 (93%) Strand = Plus / Minus Query: 578 accatatcagcaacgtagcagaagctcctagtctgtgttcctggcttctggacagtcagg 637 ||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 9409813 accatgtcagcaacatagcagaagctcctagtttgtgttcctggcttctgaacagtcagg 9409754 Query: 638 g 638 | Sbjct: 9409753 g 9409753 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 478 ttcacgttctcagcaagttccagcatggtgaattcacc 515 ||||| |||||||||||||||||||||||||||||||| Sbjct: 9410132 ttcacattctcagcaagttccagcatggtgaattcacc 9410095 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 530 ttaatgggtccagtgttgtctccattcatcagcttcataagaccatt 576 ||||| |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 9409956 ttaattggtccagtgttgtccccgttcatcagcttaataagaccatt 9409910 Score = 58.0 bits (29), Expect = 4e-05 Identities = 49/53 (92%), Gaps = 2/53 (3%) Strand = Plus / Minus Query: 647 cgtatggcctgagcaaatgaagttactaacaacacggccatcattcaatgttc 699 |||| ||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct: 9409660 cgtacggcctgagcaa-tgaagttactaacaacacgcccatca-tcaatgttc 9409610 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 caacgttgctataattgatttagg 38 |||| ||||||||||||||||||| Sbjct: 9410668 caacattgctataattgatttagg 9410645 Score = 40.1 bits (20), Expect = 9.6 Identities = 35/40 (87%) Strand = Plus / Minus Query: 122 ttctaataatacaatctttcaagtgaacgacaaaggtgta 161 ||||| ||| ||||| ||||| |||||| ||||||||||| Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524
>gb|U82433.1|PAU82433 Prunus armeniaca thymidine diphospho-glucose 4-6-dehydratase homolog mRNA, partial cds Length = 1012 Score = 73.8 bits (37), Expect = 7e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 384 tcctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 ||||| || ||||||||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 702 tccttcgcttttgtgatgtcaggcttcctctggcgaggatcatccggcgtgttctca 646 Score = 46.1 bits (23), Expect = 0.16 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand = Plus / Minus Query: 478 ttcacgttctcagcaagttccagcatggtgaattcaccctgggttcccaatgttaatggg 537 ||||| ||||| ||||| || | ||| || |||||||| ||| || |||||||| || || Sbjct: 609 ttcacattctcggcaagctcgatcattgtaaattcacc-tggatttccaatgttgatcgg 551 Query: 538 tccagtgttgtctcc 552 ||||||||||||||| Sbjct: 550 tccagtgttgtctcc 536
>gb|AY619950.1| Nicotiana tabacum UDP-glucuronate decarboxylase 1 mRNA, complete cds Length = 1279 Score = 65.9 bits (33), Expect = 2e-07 Identities = 170/213 (79%), Gaps = 2/213 (0%) Strand = Plus / Minus Query: 478 ttcacgttctcagcaagttccagcatggtgaattcaccctgggttcccaatgttaatggg 537 ||||| ||||| || ||||| | ||| ||||||||||| ||| || ||||||||||| || Sbjct: 874 ttcacattctccgcgagttcaatcatcgtgaattcacc-tggatttccaatgttaattgg 816 Query: 538 tccagtgttgtctccattcatcagcttcataagaccattgaccatatcagcaacgtagca 597 ||||||||| ||||| | ||| ||| ||||| |||| ||||| |||| || || || Sbjct: 815 tccagtgttatctccctccataagccgaataaggccatcaaccatgtcagagacataaca 756 Query: 598 gaagctcctagtctgtgttcctggcttctggacagtcagggcttcaccacgtatggcctg 657 ||||| | || |||||||||||| ||||||||||| |||||| |||| || || || Sbjct: 755 aaagctgcgtgtttgtgttcctggcaactggacagtcaacgcttcatcacgaattgcttg 696 Query: 658 agcaaatgaagttactaacaacacggccatcat 690 || ||||||||| || |||||||| ||||||| Sbjct: 695 ggc-aatgaagttgctgacaacacgaccatcat 664 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 387 tttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgtt 436 ||||||||||||||||| || || ||||| ||||| ||||| |||||||| Sbjct: 964 tttgcctttgtgatgtccggttttctctgccgaggatcatctggagtgtt 915
>gb|AY922315.1| Populus tomentosa UDP-glucuronic acid decarboxylase 3 (UXS3) mRNA, complete cds Length = 1129 Score = 61.9 bits (31), Expect = 3e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 385 cctttgcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctc 439 ||||||||||||| |||||||| |||||||| || || ||||||||||| ||||| Sbjct: 981 cctttgcctttgtaatgtcaggtttcctctgtcgtggatcatcaggagtattctc 927 Score = 52.0 bits (26), Expect = 0.003 Identities = 151/190 (79%), Gaps = 2/190 (1%) Strand = Plus / Minus Query: 501 catggtgaattcaccctgggttcccaatgttaatgggtccagtgttgtctccattcatca 560 |||||| ||||| ||||||||| |||||||| || ||||||||||| ||||| | ||| | Sbjct: 866 catggtaaattc-ccctgggtttccaatgttgattggtccagtgttctctccttccatga 808 Query: 561 gcttcataagaccattgaccatatcagcaacgtagcagaagctcctagtctgtgttcctg 620 | ||||| |||| ||||| |||| ||||||||||| || | ||| || ||||| | Sbjct: 807 ggcgaataaggccatcaaccatgtcagagacgtagcagaaactgcgagtttgagttccag 748 Query: 621 gcttctggacagtcagggcttcaccacgtatggcctgagcaaatgaagttactaacaaca 680 |||| || || |||| | ||||||||| | || ||||| ||||||||| || |||||| Sbjct: 747 gcttttgaactgtcaatggttcaccacgaagtgcttgagc-aatgaagttgctcacaaca 689 Query: 681 cggccatcat 690 || ||||||| Sbjct: 688 cgcccatcat 679
>dbj|AB059568.1| Pisum sativum uxs1 mRNA for UDP-D-glucuronate carboxy-lyase, complete cds Length = 1406 Score = 48.1 bits (24), Expect = 0.039 Identities = 30/32 (93%) Strand = Plus / Minus Query: 485 tctcagcaagttccagcatggtgaattcaccc 516 ||||||||||||| ||||| |||||||||||| Sbjct: 962 tctcagcaagttcaagcatagtgaattcaccc 931
>ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript variant AT3G46440.1 mRNA, complete cds Length = 1374 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 1051 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1001 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 662 aatgaagttactaacaacacggccatcat 690 ||||||||| || |||||||||||||||| Sbjct: 782 aatgaagttgcttacaacacggccatcat 754
>ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript variant AT3G46440.2 mRNA, complete cds Length = 1464 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 1141 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1091 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 662 aatgaagttactaacaacacggccatcat 690 ||||||||| || |||||||||||||||| Sbjct: 872 aatgaagttgcttacaacacggccatcat 844
>ref|NM_116149.2| Arabidopsis thaliana unknown protein AT3G62840 mRNA, complete cds Length = 1063 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Plus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 966 gcctttgtgatgtcaggctttctcttgtgagggtc 1000
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2); catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2) mRNA, complete cds Length = 1338 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 921 gaagttactaacaacacgcccatcat 896
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds Length = 1338 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 921 gaagttactaacaacacgcccatcat 896
>gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratases (At3g46440) mRNA, complete cds Length = 1057 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 926 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 876 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 662 aatgaagttactaacaacacggccatcat 690 ||||||||| || |||||||||||||||| Sbjct: 657 aatgaagttgcttacaacacggccatcat 629
>gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratase (At3g46440) mRNA, complete cds Length = 1356 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 1051 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 1001 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 662 aatgaagttactaacaacacggccatcat 690 ||||||||| || |||||||||||||||| Sbjct: 782 aatgaagttgcttacaacacggccatcat 754
>emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9 Length = 110257 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 88182 gcctttgtgatgtcaggctttctcttgtgagggtc 88148 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 87123 gaagttactaacaacacgcccatcat 87098
>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15 Length = 100328 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Plus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 75554 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 75604 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 662 aatgaagttactaacaacacggccatcat 690 ||||||||| || |||||||||||||||| Sbjct: 76088 aatgaagttgcttacaacacggccatcat 76116
>emb|AJ275318.1|CAR275318 Cicer arietinum mRNA for dTDP-glucose 4-6-dehydratase Length = 1356 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 485 tctcagcaagttccagcatggtgaattcacc 515 ||||||||||||| ||||| ||||||||||| Sbjct: 902 tctcagcaagttcaagcattgtgaattcacc 872
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds Length = 1663 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggtc 1312 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 1074 gaagttactaacaacacgcccatcat 1049
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds Length = 1701 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 1346 gcctttgtgatgtcaggctttctcttgtgagggtc 1312 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 1074 gaagttactaacaacacgcccatcat 1049
>emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS6ZC01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1114 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 876 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 826
>emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZD03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1211 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 950 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 900 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 662 aatgaagttactaacaacacggccatcat 690 ||||||||| || |||||||||||||||| Sbjct: 681 aatgaagttgcttacaacacggccatcat 653
>emb|BX822583.1|CNS0A63N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB50ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 451 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 92 gcctttgtgatgtcaggctttctcttgtgagggtc 58
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 923 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 564 gcctttgtgatgtcaggctttctcttgtgagggtc 530 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 292 gaagttactaacaacacgcccatcat 267
>gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete sequence Length = 1281 Score = 46.1 bits (23), Expect = 0.16 Identities = 44/51 (86%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatcaggagtgttctca 440 |||||||||||||| ||||||||||| | || ||||| || ||||||||| Sbjct: 987 gcctttgtgatgtctggcttcctctgtcttggatcatccggtgtgttctca 937
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA, complete cds Length = 1338 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 1193 gcctttgtgatgtcaggctttctcttgtgagggtc 1159 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 921 gaagttactaacaacacgcccatcat 896
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases Length = 1660 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtc 424 |||||||||||||||||||| |||| | ||||||| Sbjct: 1332 gcctttgtgatgtcaggctttctcttgtgagggtc 1298 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatcat 690 |||||||||||||||||| ||||||| Sbjct: 1060 gaagttactaacaacacgcccatcat 1035
>gb|AY922314.1| Populus tomentosa UDP-glucuronic acid decarboxylase 2 (UXS2) mRNA, complete cds Length = 1466 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 669 ttactaacaacacggccatcat 690 |||||||||||||||||||||| Sbjct: 1023 ttactaacaacacggccatcat 1002
>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence Length = 108802 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Plus Query: 490 gcaagttccagcatggtgaattcacc 515 ||||||||||||||||| |||||||| Sbjct: 40939 gcaagttccagcatggtaaattcacc 40964
>gb|AC155339.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH015H17, complete sequence Length = 110885 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatc 427 |||||||| ||||||||||| |||| | |||||||||| Sbjct: 19871 gcctttgtaatgtcaggctttctcttgtgagggtcatc 19834
>gb|AC155335.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence Length = 118144 Score = 44.1 bits (22), Expect = 0.61 Identities = 34/38 (89%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttcctctggcgagggtcatc 427 |||||||| ||||||||||| |||| | |||||||||| Sbjct: 106049 gcctttgtaatgtcaggctttctcttgtgagggtcatc 106012
>ref|NM_115212.2| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); catalytic AT3G53520 (UXS1) transcript variant AT3G53520.2 mRNA, complete cds Length = 1531 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 896 aagttactaacaacacgcccatcat 872
>ref|NM_180363.1| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); catalytic AT3G53520 (UXS1) transcript variant AT3G53520.1 mRNA, complete cds Length = 1529 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 896 aagttactaacaacacgcccatcat 872
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence Length = 255062 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gcctttgtgatgtcaggcttc 410 ||||||||||||||||||||| Sbjct: 163613 gcctttgtgatgtcaggcttc 163593
>gb|AY065075.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydratase-like protein (F4P12.220) mRNA, complete cds Length = 1666 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 1030 aagttactaacaacacgcccatcat 1006
>emb|BX823214.1|CNS0A7KG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS11ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1608 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 1020 aagttactaacaacacgcccatcat 996
>emb|BX823176.1|CNS0A7M4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB95ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1648 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 1074 aagttactaacaacacgcccatcat 1050
>emb|BX822635.1|CNS0A7MG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB54ZH12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1604 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 1017 aagttactaacaacacgcccatcat 993
>gb|BT003355.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydratase-like protein (At3g53520) mRNA, complete cds Length = 1492 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 923 aagttactaacaacacgcccatcat 899
>gb|AF387787.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS1) mRNA, complete cds Length = 1302 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 923 aagttactaacaacacgcccatcat 899
>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12 Length = 144628 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 666 aagttactaacaacacggccatcat 690 ||||||||||||||||| ||||||| Sbjct: 83848 aagttactaacaacacgcccatcat 83824
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome Length = 2572079 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 taattgatttagggaagtgc 45 |||||||||||||||||||| Sbjct: 657464 taattgatttagggaagtgc 657445
>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence Length = 35325 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaagtttctaataatacaat 136 |||||||||||||||||||| Sbjct: 20319 aaagtttctaataatacaat 20300
>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G) and a novel gene, complete sequence Length = 145136 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaagtttctaataatacaat 136 |||||||||||||||||||| Sbjct: 103537 aaagtttctaataatacaat 103518
>emb|AL136135.19| Human DNA sequence from clone RP11-301C18 on chromosome 6 Contains the 5'end of a gene for a novel protein (2410004N11RIK), the gene for a novel protein, the 5' end of a gene for a novel protein and a CpG island, complete sequence Length = 46699 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 619 tggcttctggacagtcagggcttc 642 ||||||||||| |||||||||||| Sbjct: 13241 tggcttctggagagtcagggcttc 13218
>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18, complete sequence Length = 149493 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 taaagtttctaataatacaa 135 |||||||||||||||||||| Sbjct: 107638 taaagtttctaataatacaa 107657
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 agcttcataagaccattgac 579 |||||||||||||||||||| Sbjct: 166392 agcttcataagaccattgac 166411
>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence Length = 195101 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 tatataaagtttctaataat 131 |||||||||||||||||||| Sbjct: 13115 tatataaagtttctaataat 13096
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 661 aaatgaagttactaacaacacggc 684 ||||||||||||||||| |||||| Sbjct: 1140013 aaatgaagttactaacagcacggc 1139990
>gb|AC091643.6| Homo sapiens chromosome 18, clone RP11-727B4, complete sequence Length = 169944 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 agcttcataagaccattgac 579 |||||||||||||||||||| Sbjct: 68254 agcttcataagaccattgac 68273
>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207228 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gacaaaggtgtaattggttt 169 |||||||||||||||||||| Sbjct: 337 gacaaaggtgtaattggttt 318
>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence Length = 193884 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 ttggccttcttgggcactgc 307 |||||||||||||||||||| Sbjct: 153079 ttggccttcttgggcactgc 153098
>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 135177 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gacaaaggtgtaattggttt 169 |||||||||||||||||||| Sbjct: 76946 gacaaaggtgtaattggttt 76927
>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186278 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 627 ggacagtcagggcttcacca 646 |||||||||||||||||||| Sbjct: 163567 ggacagtcagggcttcacca 163548
>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18, complete sequence Length = 176163 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 taaagtttctaataatacaa 135 |||||||||||||||||||| Sbjct: 165685 taaagtttctaataatacaa 165666
>gb|AY108129.1| Zea mays PCO069672 mRNA sequence Length = 984 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 ttgggctcccagtcaagaac 382 |||||||||||||||||||| Sbjct: 623 ttgggctcccagtcaagaac 604
>gb|AY106346.1| Zea mays PCO069392 mRNA sequence Length = 1708 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 665 gaagttactaacaacacggccatc 688 ||||||||| |||||||||||||| Sbjct: 994 gaagttactgacaacacggccatc 971
>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete sequence Length = 231197 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tatgagtatgctctggcaaa 247 |||||||||||||||||||| Sbjct: 208325 tatgagtatgctctggcaaa 208306
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 agttccagcatggtgaattc 512 |||||||||||||||||||| Sbjct: 372396 agttccagcatggtgaattc 372377
>emb|AL929024.9| Mouse DNA sequence from clone RP23-480H10 on chromosome 2, complete sequence Length = 159617 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ttggccttcttgggcactgc 307 |||||||||||||||||||| Sbjct: 53068 ttggccttcttgggcactgc 53049
>gb|M15265.1|CUCPHT Cucurbita pepo (zucchini) phytochrome mRNA, complete cds Length = 3574 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 547 gtctccattcatcagcttca 566 |||||||||||||||||||| Sbjct: 3434 gtctccattcatcagcttca 3415 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,567,929 Number of Sequences: 3902068 Number of extensions: 5567929 Number of successful extensions: 106071 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105772 Number of HSP's gapped (non-prelim): 276 length of query: 699 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 676 effective length of database: 17,143,297,704 effective search space: 11588869247904 effective search space used: 11588869247904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)