ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478818.1| Oryza sativa (japonica cultivar-group), mRNA 161 3e-36
2gb|AY110830.1| Zea mays CL4092_1 mRNA sequence 129 9e-27
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
4dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
5dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 123 6e-25
6gb|AY112241.1| Zea mays CL4092_-2 mRNA sequence 92 2e-15
7gb|AC093763.3| Homo sapiens BAC clone RP11-91J3 from 4, complete... 54 4e-04
8gb|AC025501.19| Mus musculus chromosome 10, clone RP23-129O23, c... 42 1.6
9gb|AC123074.2| Mus musculus BAC clone RP23-168H19 from 10, compl... 42 1.6
10emb|AL442126.6| Human DNA sequence from clone RP11-409J23 on chr... 42 1.6
11emb|AL359842.14| Human DNA sequence from clone RP11-388D4 on chr... 42 1.6
12gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, com... 42 1.6
13dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AK109271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
16emb|CR792454.8| Zebrafish DNA sequence from clone CH211-9F20 in ... 42 1.6
17gb|AC142415.4| Mus musculus BAC clone RP23-155F24 from 10, compl... 42 1.6
18gb|AY790940.1| Homo sapiens insulin-like growth factor 1 (somato... 40 6.5
19emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AW... 40 6.5
20gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, com... 40 6.5
21emb|AL035401.23|HS209A6 Human DNA sequence from clone RP1-209A6 ... 40 6.5
22emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4 40 6.5
23gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kin... 40 6.5
24gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, compl... 40 6.5
25gb|AC109469.2| Homo sapiens chromosome 5 clone RP11-349F8, compl... 40 6.5
26gb|AC078911.11| Mus musculus Strain C57BL6/J Chromosome 2 RP23-1... 40 6.5
27gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Can... 40 6.5
28gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, co... 40 6.5
29gb|AY260957.1| Homo sapiens insulin-like growth factor 1 (somato... 40 6.5
30emb|AL928862.13| Mouse DNA sequence from clone RP23-88J10 on chr... 40 6.5
31gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, co... 40 6.5
32emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chr... 40 6.5
33gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 40 6.5
34emb|AL603792.12| Mouse DNA sequence from clone RP23-328B4 on chr... 40 6.5 
>ref|XM_478818.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3372

 Score =  161 bits (81), Expect = 3e-36
 Identities = 174/205 (84%)
 Strand = Plus / Minus

                                                                        
Query: 276  atggactgtagcatgagctgctgctgtggttgcaaggtggaaaatgttgacgcaagaaaa 335
            |||||||| ||||  ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 3359 atggactgcagcagaagctgctgctgtggttgcaagctggaaaatgttgaggcaagaaaa 3300

                                                                        
Query: 336  tcaggtggcagtgtctgctgaaaccgcttcagaacattgatcatccgggtggtagtttca 395
            || ||||||| ||||||||| || ||| |||  | ||||| ||||||  |||| ||||||
Sbjct: 3299 tctggtggcaatgtctgctggaaacgcctcaagagattgaccatccgcttggttgtttca 3240

                                                                        
Query: 396  tctgttgcaagctcctttccattgcacagaacctcagcaaaaatagaaactattttagga 455
            ||||| ||||||||  |||| ||||| | |||||| |||||||| ||||| ||||| |||
Sbjct: 3239 tctgtagcaagctctgttccgttgcataaaacctccgcaaaaattgaaacaatttttgga 3180

                                     
Query: 456  agatactgactgtgaggtccaagaa 480
            ||||| || || ||||| |||||||
Sbjct: 3179 agatattggctatgaggaccaagaa 3155
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>gb|AY110830.1| Zea mays CL4092_1 mRNA sequence
          Length = 1007

 Score =  129 bits (65), Expect = 9e-27
 Identities = 180/220 (81%)
 Strand = Plus / Plus

                                                                       
Query: 261 aactatgtggataggatggactgtagcatgagctgctgctgtggttgcaaggtggaaaat 320
           |||||||| || | ||||||||||||||  ||||| ||||| ||||||||| ||||||| 
Sbjct: 312 aactatgtcgacaagatggactgtagcagtagctgttgctgcggttgcaagttggaaaac 371

                                                                       
Query: 321 gttgacgcaagaaaatcaggtggcagtgtctgctgaaaccgcttcagaacattgatcatc 380
           || || |||||||||||||| ||||  |||||||| || ||| |||  ||||| | ||||
Sbjct: 372 gtcgatgcaagaaaatcaggaggcaaagtctgctggaaacgcctcaagacattcaccatc 431

                                                                       
Query: 381 cgggtggtagtttcatctgttgcaagctcctttccattgcacagaacctcagcaaaaata 440
           | | |  |||||||||| || ||||| ||  |||||||||||| |||||| ||     | 
Sbjct: 432 ctgtttctagtttcatcagtggcaagttctgttccattgcacaaaacctctgcnnnnntt 491

                                                   
Query: 441 gaaactattttaggaagatactgactgtgaggtccaagaa 480
           ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 492 gaaacaattttaggaagatactgactgtgaggcccaagaa 531
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                            
Query: 276      atggactgtagcatgagctgctgctgtggttgcaaggtggaaaatgttgacgcaagaaaa 335
                |||||||| ||||  ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 23203179 atggactgcagcagaagctgctgctgtggttgcaagctggaaaatgttgaggcaagaaaa 23203238

                                                                            
Query: 336      tcaggtggcagtgtctgctgaaaccgcttcagaacattgatcatccgggtggtagtttca 395
                || ||||||| ||||||||| || ||| |||  | ||||| ||||||  |||| ||||||
Sbjct: 23203239 tctggtggcaatgtctgctggaaacgcctcaagagattgaccatccgcttggttgtttca 23203298

                              
Query: 396      tctgttgcaagctc 409
                ||||| ||||||||
Sbjct: 23203299 tctgtagcaagctc 23203312



 Score =  101 bits (51), Expect = 2e-18
 Identities = 135/158 (85%), Gaps = 5/158 (3%)
 Strand = Plus / Plus

                                                                            
Query: 53       cccaaaatcatatttgaatacaagataatact-acactctacatcaaaaaccatatggaa 111
                ||||||| ||||| ||| ||||||||||||   |||||||||||||||| ||||||| ||
Sbjct: 23202954 cccaaaaccatatctgagtacaagataatatacacactctacatcaaaa-ccatatgaaa 23203012

                                                                            
Query: 112      tggcgaccaccaatcccttgaagcgaccaatgc--atgcacaaatgaactcccccagaat 169
                |||| ||| ||||| ||||||||| | ||||||  || ||||||||||||| |||| || 
Sbjct: 23203013 tggcaacctccaattccttgaagccagcaatgcgcattcacaaatgaactcacccacaa- 23203071

                                                      
Query: 170      aagattcaacacaaaaaattggttgacagtaccaatga 207
                | ||||||||||||| ||||||||||| ||| ||||||
Sbjct: 23203072 atgattcaacacaaagaattggttgacggtaacaatga 23203109
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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                         
Query: 276   atggactgtagcatgagctgctgctgtggttgcaaggtggaaaatgttgacgcaagaaaa 335
             |||||||| ||||  ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 66093 atggactgcagcagaagctgctgctgtggttgcaagctggaaaatgttgaggcaagaaaa 66152

                                                                         
Query: 336   tcaggtggcagtgtctgctgaaaccgcttcagaacattgatcatccgggtggtagtttca 395
             || ||||||| ||||||||| || ||| |||  | ||||| ||||||  |||| ||||||
Sbjct: 66153 tctggtggcaatgtctgctggaaacgcctcaagagattgaccatccgcttggttgtttca 66212

                           
Query: 396   tctgttgcaagctc 409
             ||||| ||||||||
Sbjct: 66213 tctgtagcaagctc 66226



 Score =  101 bits (51), Expect = 2e-18
 Identities = 135/158 (85%), Gaps = 5/158 (3%)
 Strand = Plus / Plus

                                                                         
Query: 53    cccaaaatcatatttgaatacaagataatact-acactctacatcaaaaaccatatggaa 111
             ||||||| ||||| ||| ||||||||||||   |||||||||||||||| ||||||| ||
Sbjct: 65868 cccaaaaccatatctgagtacaagataatatacacactctacatcaaaa-ccatatgaaa 65926

                                                                         
Query: 112   tggcgaccaccaatcccttgaagcgaccaatgc--atgcacaaatgaactcccccagaat 169
             |||| ||| ||||| ||||||||| | ||||||  || ||||||||||||| |||| || 
Sbjct: 65927 tggcaacctccaattccttgaagccagcaatgcgcattcacaaatgaactcacccacaa- 65985

                                                   
Query: 170   aagattcaacacaaaaaattggttgacagtaccaatga 207
             | ||||||||||||| ||||||||||| ||| ||||||
Sbjct: 65986 atgattcaacacaaagaattggttgacggtaacaatga 66023
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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1699_E05
          Length = 170666

 Score =  123 bits (62), Expect = 6e-25
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                          
Query: 276    atggactgtagcatgagctgctgctgtggttgcaaggtggaaaatgttgacgcaagaaaa 335
              |||||||| ||||  ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 147363 atggactgcagcagaagctgctgctgtggttgcaagctggaaaatgttgaggcaagaaaa 147422

                                                                          
Query: 336    tcaggtggcagtgtctgctgaaaccgcttcagaacattgatcatccgggtggtagtttca 395
              || ||||||| ||||||||| || ||| |||  | ||||| ||||||  |||| ||||||
Sbjct: 147423 tctggtggcaatgtctgctggaaacgcctcaagagattgaccatccgcttggttgtttca 147482

                            
Query: 396    tctgttgcaagctc 409
              ||||| ||||||||
Sbjct: 147483 tctgtagcaagctc 147496



 Score =  101 bits (51), Expect = 2e-18
 Identities = 135/158 (85%), Gaps = 5/158 (3%)
 Strand = Plus / Plus

                                                                          
Query: 53     cccaaaatcatatttgaatacaagataatact-acactctacatcaaaaaccatatggaa 111
              ||||||| ||||| ||| ||||||||||||   |||||||||||||||| ||||||| ||
Sbjct: 147138 cccaaaaccatatctgagtacaagataatatacacactctacatcaaaa-ccatatgaaa 147196

                                                                          
Query: 112    tggcgaccaccaatcccttgaagcgaccaatgc--atgcacaaatgaactcccccagaat 169
              |||| ||| ||||| ||||||||| | ||||||  || ||||||||||||| |||| || 
Sbjct: 147197 tggcaacctccaattccttgaagccagcaatgcgcattcacaaatgaactcacccacaa- 147255

                                                    
Query: 170    aagattcaacacaaaaaattggttgacagtaccaatga 207
              | ||||||||||||| ||||||||||| ||| ||||||
Sbjct: 147256 atgattcaacacaaagaattggttgacggtaacaatga 147293
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>gb|AY112241.1| Zea mays CL4092_-2 mRNA sequence
          Length = 483

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 139/170 (81%)
 Strand = Plus / Plus

                                                                       
Query: 261 aactatgtggataggatggactgtagcatgagctgctgctgtggttgcaaggtggaaaat 320
           |||||||| || | ||||||||||||||  ||||| ||||| ||||||||| ||||||| 
Sbjct: 18  aactatgtcgacaagatggactgtagcagtagctggtgctgcggttgcaagttggaaaac 77

                                                                       
Query: 321 gttgacgcaagaaaatcaggtggcagtgtctgctgaaaccgcttcagaacattgatcatc 380
           || || |||||||||||||| ||||  |||||||| || ||| |||  ||||| | ||||
Sbjct: 78  gtcgatgcaagaaaatcaggaggcaaagtctgctggaaacgcctcaagacattcaccatc 137

                                                             
Query: 381 cgggtggtagtttcatctgttgcaagctcctttccattgcacagaacctc 430
           | | |  |||||||||| || ||||| ||  |||||||||||| ||||||
Sbjct: 138 ctgtttctagtttcatcagtggcaagttctgttccattgcacaaaacctc 187
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>gb|AC093763.3| Homo sapiens BAC clone RP11-91J3 from 4, complete sequence
          Length = 154684

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 434    aaaaatagaaactattttaggaagata 460
              |||||||||||||||||||||||||||
Sbjct: 144710 aaaaatagaaactattttaggaagata 144684
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>gb|AC025501.19| Mus musculus chromosome 10, clone RP23-129O23, complete sequence
          Length = 218156

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 59    atcatatttgaatacaagataatac 83
             ||||||| |||||||||||||||||
Sbjct: 30180 atcatatctgaatacaagataatac 30204
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>gb|AC123074.2| Mus musculus BAC clone RP23-168H19 from 10, complete sequence
          Length = 210189

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 59  atcatatttgaatacaagataatac 83
           ||||||| |||||||||||||||||
Sbjct: 755 atcatatctgaatacaagataatac 731
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>emb|AL442126.6| Human DNA sequence from clone RP11-409J23 on chromosome 13, complete
            sequence
          Length = 133789

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 440  agaaactattttaggaagata 460
            |||||||||||||||||||||
Sbjct: 1944 agaaactattttaggaagata 1964
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>emb|AL359842.14| Human DNA sequence from clone RP11-388D4 on chromosome 13 Contains a
              peroxisomal biogenesis factor 12 (PEX12) pseudogene,
              complete sequence
          Length = 136943

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 440    agaaactattttaggaagata 460
              |||||||||||||||||||||
Sbjct: 136887 agaaactattttaggaagata 136907
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>gb|AC160555.4| Mus musculus chromosome 5, clone RP23-387L12, complete sequence
          Length = 196977

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    aaatcatatttgaatacaaga 77
             |||||||||||||||||||||
Sbjct: 60714 aaatcatatttgaatacaaga 60694
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 287     catgagctgctgctgtggttg 307
               |||||||||||||||||||||
Sbjct: 3292178 catgagctgctgctgtggttg 3292158
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>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0015I14
          Length = 150650

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 287   catgagctgctgctgtggttg 307
             |||||||||||||||||||||
Sbjct: 79541 catgagctgctgctgtggttg 79521
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>dbj|AK109271.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A07, full
           insert sequence
          Length = 588

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 287 catgagctgctgctgtggttg 307
           |||||||||||||||||||||
Sbjct: 46  catgagctgctgctgtggttg 26
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>emb|CR792454.8| Zebrafish DNA sequence from clone CH211-9F20 in linkage group 4,
             complete sequence
          Length = 195790

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   ctgtagcatgagctgctgctg 301
             |||||||||||||||||||||
Sbjct: 90844 ctgtagcatgagctgctgctg 90864
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>gb|AC142415.4| Mus musculus BAC clone RP23-155F24 from 10, complete sequence
          Length = 209693

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 59     atcatatttgaatacaagataatac 83
              ||||||| |||||||||||||||||
Sbjct: 153532 atcatatctgaatacaagataatac 153508
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>gb|AY790940.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene,
             complete cds
          Length = 88577

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 293   ctgctgctgtggttgcaaggtgga 316
             |||||||||||||||||| |||||
Sbjct: 66553 ctgctgctgtggttgcaaagtgga 66576
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>emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AWN gene, AQN-1 gene,
              PSP-II gene, PSP-I gene, AQN-3 gene and C10ORF120 gene
          Length = 270148

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 239    ttgcagccacaaaacagaagagaa 262
              |||||||||||||| |||||||||
Sbjct: 248674 ttgcagccacaaaaaagaagagaa 248697
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>gb|AC117598.7| Mus musculus chromosome 1, clone RP23-398H16, complete sequence
          Length = 196300

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    ttgccatttcccttacatctttga 42
             |||||||||||||||| |||||||
Sbjct: 23812 ttgccatttcccttacctctttga 23835
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>emb|AL035401.23|HS209A6 Human DNA sequence from clone RP1-209A6 on chromosome 6p22.1-24.3
             Contains part of a novel gene, complete sequence
          Length = 105960

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   acagaacctcagcaaaaatagaaa 444
             |||||||||||| |||||||||||
Sbjct: 27752 acagaacctcagtaaaaatagaaa 27729
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>emb|AL035477.6|PFMAL4P4 Plasmodium falciparum MAL4P4
          Length = 272698

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     aaaatcatatttgaatacaa 75
              ||||||||||||||||||||
Sbjct: 156720 aaaatcatatttgaatacaa 156701
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>gb|AY649844.2| Schistosoma mansoni insulin receptor tyrosine kinase 3 (RTK-3) mRNA,
            complete cds
          Length = 5521

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  caatcccttgaagcgaccaa 141
            ||||||||||||||||||||
Sbjct: 4758 caatcccttgaagcgaccaa 4777
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>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence
          Length = 189590

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    gtggttgcaaggtggaaaat 320
              ||||||||||||||||||||
Sbjct: 160535 gtggttgcaaggtggaaaat 160516
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>gb|AC109469.2| Homo sapiens chromosome 5 clone RP11-349F8, complete sequence
          Length = 184776

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   gtggttgcaaggtggaaaat 320
             ||||||||||||||||||||
Sbjct: 69703 gtggttgcaaggtggaaaat 69684
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>gb|AC078911.11| Mus musculus Strain C57BL6/J Chromosome 2 RP23-111A22, complete
             sequence
          Length = 200329

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    atacaagataatactacact 89
             ||||||||||||||||||||
Sbjct: 40303 atacaagataatactacact 40284
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>gb|AC010202.6| Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170004

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 293    ctgctgctgtggttgcaaggtgga 316
              |||||||||||||||||| |||||
Sbjct: 148620 ctgctgctgtggttgcaaagtgga 148643
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>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence
          Length = 180202

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   tcaaccttgcagccacaaaa 252
             ||||||||||||||||||||
Sbjct: 84712 tcaaccttgcagccacaaaa 84731
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>gb|AY260957.1| Homo sapiens insulin-like growth factor 1 (somatomedin C) (IGF1) gene,
             complete cds
          Length = 88066

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 293   ctgctgctgtggttgcaaggtgga 316
             |||||||||||||||||| |||||
Sbjct: 66517 ctgctgctgtggttgcaaagtgga 66540
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>emb|AL928862.13| Mouse DNA sequence from clone RP23-88J10 on chromosome 2, complete
              sequence
          Length = 143650

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     atacaagataatactacact 89
              ||||||||||||||||||||
Sbjct: 127537 atacaagataatactacact 127518
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>gb|AC115020.11| Mus musculus chromosome 1, clone RP24-231D14, complete sequence
          Length = 188569

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    ttgccatttcccttacatctttga 42
             |||||||||||||||| |||||||
Sbjct: 43415 ttgccatttcccttacctctttga 43392
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>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete
              sequence
          Length = 183369

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tgccatttcccttacatctt 39
              ||||||||||||||||||||
Sbjct: 140858 tgccatttcccttacatctt 140839
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>gb|AC155343.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH077A05, complete sequence
          Length = 113253

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    caagccccaaaatcatattt 67
             ||||||||||||||||||||
Sbjct: 33183 caagccccaaaatcatattt 33202
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>emb|AL603792.12| Mouse DNA sequence from clone RP23-328B4 on chromosome 11, complete
              sequence
          Length = 203030

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 412    ttccattgcacagaacctcagcaa 435
              |||| |||||||||||||||||||
Sbjct: 178659 ttcccttgcacagaacctcagcaa 178636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,499,844
Number of Sequences: 3902068
Number of extensions: 5499844
Number of successful extensions: 109861
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109739
Number of HSP's gapped (non-prelim): 107
length of query: 482
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 460
effective length of database: 17,147,199,772
effective search space: 7887711895120
effective search space used: 7887711895120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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