>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = -2

Query: 557  RGEPQTREYGEGVGLLLCSAARRGDVPAARHGQGTGCSTAPEKVYYGPDR-LGGGGVPAQ 381
            RG  +    G G    L      G + AA HG G        +V  GP+R LGG GVP  
Sbjct: 1182 RGAARVGHVGVGPAEALQDEGLLGAIVAAAHGHGA------HRVRQGPERVLGGHGVPDV 1235

Query: 380  VRVPLHVEGRGGMVADALADEGIPD--QQGLGRLPPCVPRP 264
             +   H  G  G VA    D  + +  +  +G L P V +P
Sbjct: 1236 RQRRGHAAGDEGAVAVGRVDPALAELVEALVGGLHPRVLQP 1276

>CHKB_RAT (O54783) Choline/ethanolamine kinase [Includes: Choline kinase beta|
           (EC 2.7.1.32) (CK); Ethanolamine kinase (EC 2.7.1.82)
           (EK)]
          Length = 394

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 377 EPAPERHRLPAGLARSTPSRA-PYCTQYLARAWRRAR 484
           EP P R R  + L+R    RA  +C +YL  AWRRAR
Sbjct: 30  EPIPNRRR-SSSLSRDAQRRAYQWCREYLGGAWRRAR 65

>CHKB_MOUSE (O55229) Choline/ethanolamine kinase [Includes: Choline kinase beta|
           (EC 2.7.1.32) (CK); Ethanolamine kinase (EC 2.7.1.82)
           (EK)]
          Length = 394

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 377 EPAPERHRLPAGLARSTPSRA-PYCTQYLARAWRRAR 484
           EP P R R  + L+R    RA  +C +YL  AWRRAR
Sbjct: 30  EPIPNRRRA-SSLSRDAQRRAYQWCREYLGGAWRRAR 65

>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1|
          Length = 1319

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +1

Query: 433 SGAVLHPVPCPCLAAGTSPRRAALQRRSPTPS 528
           SGA  H VP PCL    SP RAA     P+ S
Sbjct: 179 SGASSHAVPAPCLPLDQSPNRAASFHGLPSSS 210

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 25/77 (32%), Positives = 32/77 (41%)
 Frame = -2

Query: 509  LCSAARRGDVPAARHGQGTGCSTAPEKVYYGPDRLGGGGVPAQVRVPLHVEGRGGMVADA 330
            +C+A    D    RHG G G    P+ V Y P    G   P Q  VPL    R G++ + 
Sbjct: 2100 MCAALNSMDQYGGRHGSGGG---GPDLVQYQPQHGPGLSAP-QSLVPL----RPGLLGNP 2151

Query: 329  LADEGIPDQQGLGRLPP 279
               EG P    L +  P
Sbjct: 2152 TFPEGHPSPGNLAQYGP 2168

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/77 (31%), Positives = 32/77 (41%)
 Frame = -2

Query: 509  LCSAARRGDVPAARHGQGTGCSTAPEKVYYGPDRLGGGGVPAQVRVPLHVEGRGGMVADA 330
            +C+A    D    RHG G+G    P+ V Y P    G   P Q   PL    R G++ + 
Sbjct: 2105 MCAALNSMDQYGGRHGSGSG---GPDLVQYQPQHGPGLSAP-QGLAPL----RSGLLGNP 2156

Query: 329  LADEGIPDQQGLGRLPP 279
               EG P    L +  P
Sbjct: 2157 TYPEGQPSPGNLAQYGP 2173

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 28/95 (29%), Positives = 36/95 (37%)
 Frame = -2

Query: 548 PQTREYGEGVGLLLCSAARRGDVPAARHGQGTGCSTAPEKVYYGPDRLGGGGVPAQVRVP 369
           P T + G G    + S A+ G  P       TG     + V   P +   GG P    V 
Sbjct: 680 PPTSQAGAGGANSMPSGAQAGGYPGRGMPNHTGQYPPYQWVPPSPQQTVPGGAPGGAMVG 739

Query: 368 LHVEGRGGMVADALADEGIPDQQGLGRLPPCVPRP 264
            HV+G+G      +   G P  QG G      PRP
Sbjct: 740 NHVQGKGTPPPPVVG--GPPPPQGSGS-----PRP 767

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
 Frame = -2

Query: 563 PFRGEPQTR-EYGEGVGL-----LLCSAARRGDVPAARHGQGTGCSTAP-EKVYYGPDRL 405
           PF G  +    +G G+ +     +L +A +RG++ A + G G G S    E++  G DRL
Sbjct: 351 PFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGGGGGGSVPGIERMGPGIDRL 410

Query: 404 GGGGV 390
           GG G+
Sbjct: 411 GGAGM 415

>XDH_BOVIN (P80457) Xanthine dehydrogenase/oxidase [Includes: Xanthine|
           dehydrogenase (EC 1.17.1.4) (XD); Xanthine oxidase (EC
           1.17.3.2) (XO) (Xanthine oxidoreductase)]
          Length = 1331

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +3

Query: 429 LLGRRTAPSTLPVPGGGHVSPACCAAKKKPHTFAVLPCLWFSPE 560
           L G RT        GG   +P CC  +KK HT  + P L F+PE
Sbjct: 156 LQGFRTFAKNGGCCGGNGNNPNCCMNQKKDHTVTLSPSL-FNPE 198

>FADH_METMR (P47734) S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284)|
           (Glutathione-dependent formaldehyde dehydrogenase) (FDH)
           (FALDH)
          Length = 424

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 538 GSTAKVWGFFFAAQHAGETCPPPGTGKVLGAVRRPRRCTTGQ 413
           G T  VWG    AQ   ++C   G G+V+   R P R T  Q
Sbjct: 220 GDTVAVWGCGPVAQFVIQSCWMLGAGRVIAIDRVPERLTMAQ 261

>SNG1_RAT (Q62876) Synaptogyrin-1 (p29)|
          Length = 234

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 364 TWKGGEVWSPTRWLMKEYRINRDSAAFRHAYLDPKAPDVVLHGDQGLPEAGXPP 203
           TW G  V +      + Y+I  DSA F   Y+DP     + +     P AG  P
Sbjct: 160 TWAGQAVLA-----FQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPSAGSDP 208

>SNG1_MOUSE (O55100) Synaptogyrin-1|
          Length = 234

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -3

Query: 364 TWKGGEVWSPTRWLMKEYRINRDSAAFRHAYLDPKAPDVVLHGDQGLPEAGXPP 203
           TW G  V +      + Y+I  DSA F   Y+DP     + +     P AG  P
Sbjct: 160 TWAGQAVLA-----FQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPSAGSDP 208

>EPN1_RAT (O88339) Epsin-1 (EPS-15-interacting protein 1)|
          Length = 575

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 135 SASCSARWSAQSPPPRWSCCRXAGGXPASGRPWSP 239
           +A+ S  W A + PP       A   PASG PW P
Sbjct: 289 AAAASDPWGAPAVPPAADPWGGAAPTPASGDPWRP 323

>ELN_HUMAN (P15502) Elastin precursor (Tropoelastin)|
          Length = 786

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 33/116 (28%), Positives = 40/116 (34%), Gaps = 33/116 (28%)
 Frame = -2

Query: 527 EGVGLLLCSAARRGDVPAARHGQGT-------GCSTAPEKVYYG---PDRLGGGGVPAQV 378
           EGV   L    R GD  +++H   T       G   A +   YG   P  LGG G    V
Sbjct: 615 EGVRRSLSPELREGDPSSSQHLPSTPSSPRVPGALAAAKAAKYGAAVPGVLGGLGALGGV 674

Query: 377 RVPLHVEGRGGMVADALADE-----------------------GIPDQQGLGRLPP 279
            +P  V G G   A A A                         G+P   GLG +PP
Sbjct: 675 GIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPP 730

>MYRIP_HUMAN (Q8NFW9) Rab effector MyRIP (Myosin-VIIa- and Rab-interacting|
           protein) (Exophilin-8) (Slp homolog lacking C2 domains
           c)
          Length = 859

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 422 STPSRAPYCTQYLARAWRRARL 487
           S P  AP+ T   AR WRRARL
Sbjct: 511 SEPEEAPHTTDRRARRWRRARL 532

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
 Frame = -2

Query: 563 PFRGEPQTR-EYGEGVGL-----LLCSAARRGDVPAARHGQGTGCST-APEKVYYGPDRL 405
           PF G  +    +G G+ +     +L +A +RG++ A + G G G S    E++  G DR+
Sbjct: 311 PFGGGMENMGRFGSGMNMGRINEILSNALKRGEIIAKQGGSGAGGSVPGIERMGPGIDRI 370

Query: 404 GGGGV 390
            G G+
Sbjct: 371 SGAGM 375

>PGCB_HUMAN (Q96GW7) Brevican core protein precursor (Brain-enriched|
           hyaluronan-binding protein) (BEHAB protein)
          Length = 911

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
 Frame = -2

Query: 545 QTREYGEGVGLLLCSAARRGD-------------VPAARHGQGTGCSTAPEKVYYGPDRL 405
           + RE GE  G    S   RG+             +PA R  +GT    AP +   G    
Sbjct: 561 EAREVGEATGGPELSGVPRGESEETGSSEGAPSLLPATRAPEGTRELEAPSEDNSGRTAP 620

Query: 404 GGGGVPAQVRVPLHVEGRGGMVADALADEGIP 309
            G  V AQ  +P     RGG+     + + +P
Sbjct: 621 AGTSVQAQPVLPTDSASRGGVAVVPASGDCVP 652

>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 494 RRGDVPAARHGQGTGCSTAPEKVYYGPDRLGGGGVPAQVRVPLHVEG 354
           +RG+   AR        +APE ++YGPDR    G P   ++P ++ G
Sbjct: 26  KRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLG-PFSEQIPSYLTG 71

>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)|
          Length = 1468

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 481 TSPRRAALQRRSPTPSPYSLVCGSPRK 561
           +SP+ +A +R SP PSP S  C SP++
Sbjct: 509 SSPQSSAHKRLSPVPSPLSPRCPSPQQ 535


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,497,720
Number of Sequences: 219361
Number of extensions: 1706524
Number of successful extensions: 5807
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5791
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)