ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473857.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2715 Score = 535 bits (270), Expect = e-149 Identities = 469/535 (87%), Gaps = 3/535 (0%) Strand = Plus / Minus Query: 192 attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 251 |||||||||||||||||||||||||||||||||||||||| || || || || || |||| Sbjct: 2713 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 2654 Query: 252 tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 311 || |||| | || |||||||||||||||||| || ||||||||||| ||||| || |||| Sbjct: 2653 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 2594 Query: 312 gcagttcttcaagcgtctctccctcttttgctcgctcaatcaccaggtgtcggccgtaga 371 | ||||||||||| |||||||| || || |||||||| ||||||| ||||| ||||||| Sbjct: 2593 gtagttcttcaagagtctctccttccttagctcgctcgatcaccaaatgtcgcccgtaga 2534 Query: 372 gatgagtgcttgccagggcttgcagggcgttctgtgcctcttgcttcgtgacgaattcga 431 |||||||||| || || ||||| || |||||||| ||||||||||| ||||||||||| | Sbjct: 2533 gatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctttgtgacgaattcaa 2474 Query: 432 caaacgcgaaacctctgtggcttccaaacttcataggcagcctgagggttttgatctggc 491 |||| |||||||| ||||| || ||||||||||||||||| |||||| |||||||||||| Sbjct: 2473 caaatgcgaaacccctgtgactcccaaacttcataggcagtctgaggcttttgatctggc 2414 Query: 492 caaatggactaaataattgcctcaggtccttttcagttgcctcaaatgctacatttcgca 551 ||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| |||| Sbjct: 2413 caaatgggctaaataattgccgcaagtccttttcagttgcttcaaatgctacattccgca 2354 Query: 552 caagcagtttggttgaactcttatccttctcatttttcttcgcagtttgaccatcctttc 611 | || ||||| ||||||||||||||||| ||||||||||| ||| |||||||| |||| Sbjct: 2353 cgaggagttttgttgaactcttatccttttcatttttctt---agtctgaccatcttttc 2297 Query: 612 tcccatggcatagttgtaagatcagagcatgcccatccaaaatcgttccctgtaggtcct 671 ||||||| || ||||| ||||||| |||||| |||||||||| |||||||||||| |||| Sbjct: 2296 tcccatgacacagttgcaagatcaaagcatgtccatccaaaaccgttccctgtagatcct 2237 Query: 672 tgcacacactggttgcagtttcaaccgaatcaaactcagcgaagccaaatnccat 726 |||| |||||||||||||||||||| || || |||||| | ||||||||| |||| Sbjct: 2236 tgcagacactggttgcagtttcaactgagtcgaactcaacaaagccaaatcccat 2182
>dbj|AK064469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H01, full insert sequence Length = 1813 Score = 535 bits (270), Expect = e-149 Identities = 469/535 (87%), Gaps = 3/535 (0%) Strand = Plus / Minus Query: 192 attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 251 |||||||||||||||||||||||||||||||||||||||| || || || || || |||| Sbjct: 1610 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 1551 Query: 252 tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 311 || |||| | || |||||||||||||||||| || ||||||||||| ||||| || |||| Sbjct: 1550 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 1491 Query: 312 gcagttcttcaagcgtctctccctcttttgctcgctcaatcaccaggtgtcggccgtaga 371 | ||||||||||| |||||||| || || |||||||| ||||||| ||||| ||||||| Sbjct: 1490 gtagttcttcaagagtctctccttccttagctcgctcgatcaccaaatgtcgcccgtaga 1431 Query: 372 gatgagtgcttgccagggcttgcagggcgttctgtgcctcttgcttcgtgacgaattcga 431 |||||||||| || || ||||| || |||||||| ||||||||||| ||||||||||| | Sbjct: 1430 gatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgctttgtgacgaattcaa 1371 Query: 432 caaacgcgaaacctctgtggcttccaaacttcataggcagcctgagggttttgatctggc 491 |||| |||||||| ||||| || ||||||||||||||||| |||||| |||||||||||| Sbjct: 1370 caaatgcgaaacccctgtgactcccaaacttcataggcagtctgaggcttttgatctggc 1311 Query: 492 caaatggactaaataattgcctcaggtccttttcagttgcctcaaatgctacatttcgca 551 ||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| |||| Sbjct: 1310 caaatgggctaaataattgccgcaagtccttttcagttgcttcaaatgctacattccgca 1251 Query: 552 caagcagtttggttgaactcttatccttctcatttttcttcgcagtttgaccatcctttc 611 | || ||||| ||||||||||||||||| ||||||||||| ||| |||||||| |||| Sbjct: 1250 cgaggagttttgttgaactcttatccttttcatttttctt---agtctgaccatcttttc 1194 Query: 612 tcccatggcatagttgtaagatcagagcatgcccatccaaaatcgttccctgtaggtcct 671 ||||||| || ||||| ||||||| |||||| |||||||||| |||||||||||| |||| Sbjct: 1193 tcccatgacacagttgcaagatcaaagcatgtccatccaaaaccgttccctgtagatcct 1134 Query: 672 tgcacacactggttgcagtttcaaccgaatcaaactcagcgaagccaaatnccat 726 |||| |||||||||||||||||||| || || |||||| | ||||||||| |||| Sbjct: 1133 tgcagacactggttgcagtttcaactgagtcgaactcaacaaagccaaatcccat 1079
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17, complete sequence Length = 160484 Score = 186 bits (94), Expect = 7e-44 Identities = 156/176 (88%), Gaps = 3/176 (1%) Strand = Plus / Plus Query: 487 ctggccaaatggactaaataattgcctcaggtccttttcagttgcctcaaatgctacatt 546 |||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| Sbjct: 24335 ctggccaaatgggctaaataattgccgcaagtccttttcagttgcttcaaatgctacatt 24394 Query: 547 tcgcacaagcagtttggttgaactcttatccttctcatttttcttcgcagtttgaccatc 606 ||||| || ||||| ||||||||||||||||| ||||||||||| ||| |||||||| Sbjct: 24395 ccgcacgaggagttttgttgaactcttatccttttcatttttctt---agtctgaccatc 24451 Query: 607 ctttctcccatggcatagttgtaagatcagagcatgcccatccaaaatcgttccct 662 ||||||||||| || ||||| ||||||| |||||| |||||||||| |||||||| Sbjct: 24452 ttttctcccatgacacagttgcaagatcaaagcatgtccatccaaaaccgttccct 24507 Score = 159 bits (80), Expect = 2e-35 Identities = 143/164 (87%) Strand = Plus / Plus Query: 192 attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 251 |||||||||||||||||||||||||||||||||||||||| || || || || || |||| Sbjct: 23711 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 23770 Query: 252 tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 311 || |||| | || |||||||||||||||||| || ||||||||||| ||||| || |||| Sbjct: 23771 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 23830 Query: 312 gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 355 | ||||||||||| |||||||| || || |||||||| |||||| Sbjct: 23831 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 23874 Score = 141 bits (71), Expect = 4e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 359 tgtcggccgtagagatgagtgcttgccagggcttgcagggcgttctgtgcctcttgcttc 418 ||||| ||||||||||||||||| || || ||||| || |||||||| ||||||||||| Sbjct: 23975 tgtcgcccgtagagatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgcttt 24034 Query: 419 gtgacgaattcgacaaacgcgaaacctctgtggcttccaaacttcataggcagcctgagg 478 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||| |||||| Sbjct: 24035 gtgacgaattcaacaaatgcgaaacccctgtgactcccaaacttcataggcagtctgagg 24094 Query: 479 gttttgatctg 489 |||||||||| Sbjct: 24095 cttttgatctg 24105 Score = 71.9 bits (36), Expect = 3e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 660 cctgtaggtccttgcacacactggttgcagtttcaaccgaatcaaactcagcgaagccaa 719 ||||||| |||||||| |||||||||||||||||||| || || |||||| | ||||||| Sbjct: 24600 cctgtagatccttgcagacactggttgcagtttcaactgagtcgaactcaacaaagccaa 24659 Query: 720 atnccat 726 || |||| Sbjct: 24660 atcccat 24666
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 186 bits (94), Expect = 7e-44 Identities = 156/176 (88%), Gaps = 3/176 (1%) Strand = Plus / Plus Query: 487 ctggccaaatggactaaataattgcctcaggtccttttcagttgcctcaaatgctacatt 546 |||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| Sbjct: 139628 ctggccaaatgggctaaataattgccgcaagtccttttcagttgcttcaaatgctacatt 139687 Query: 547 tcgcacaagcagtttggttgaactcttatccttctcatttttcttcgcagtttgaccatc 606 ||||| || ||||| ||||||||||||||||| ||||||||||| ||| |||||||| Sbjct: 139688 ccgcacgaggagttttgttgaactcttatccttttcatttttctt---agtctgaccatc 139744 Query: 607 ctttctcccatggcatagttgtaagatcagagcatgcccatccaaaatcgttccct 662 ||||||||||| || ||||| ||||||| |||||| |||||||||| |||||||| Sbjct: 139745 ttttctcccatgacacagttgcaagatcaaagcatgtccatccaaaaccgttccct 139800 Score = 159 bits (80), Expect = 2e-35 Identities = 143/164 (87%) Strand = Plus / Plus Query: 192 attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 251 |||||||||||||||||||||||||||||||||||||||| || || || || || |||| Sbjct: 139004 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 139063 Query: 252 tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 311 || |||| | || |||||||||||||||||| || ||||||||||| ||||| || |||| Sbjct: 139064 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 139123 Query: 312 gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 355 | ||||||||||| |||||||| || || |||||||| |||||| Sbjct: 139124 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 139167 Score = 141 bits (71), Expect = 4e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 359 tgtcggccgtagagatgagtgcttgccagggcttgcagggcgttctgtgcctcttgcttc 418 ||||| ||||||||||||||||| || || ||||| || |||||||| ||||||||||| Sbjct: 139268 tgtcgcccgtagagatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgcttt 139327 Query: 419 gtgacgaattcgacaaacgcgaaacctctgtggcttccaaacttcataggcagcctgagg 478 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||| |||||| Sbjct: 139328 gtgacgaattcaacaaatgcgaaacccctgtgactcccaaacttcataggcagtctgagg 139387 Query: 479 gttttgatctg 489 |||||||||| Sbjct: 139388 cttttgatctg 139398 Score = 71.9 bits (36), Expect = 3e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 660 cctgtaggtccttgcacacactggttgcagtttcaaccgaatcaaactcagcgaagccaa 719 ||||||| |||||||| |||||||||||||||||||| || || |||||| | ||||||| Sbjct: 139893 cctgtagatccttgcagacactggttgcagtttcaactgagtcgaactcaacaaagccaa 139952 Query: 720 atnccat 726 || |||| Sbjct: 139953 atcccat 139959
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 186 bits (94), Expect = 7e-44 Identities = 156/176 (88%), Gaps = 3/176 (1%) Strand = Plus / Plus Query: 487 ctggccaaatggactaaataattgcctcaggtccttttcagttgcctcaaatgctacatt 546 |||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||||| Sbjct: 31042255 ctggccaaatgggctaaataattgccgcaagtccttttcagttgcttcaaatgctacatt 31042314 Query: 547 tcgcacaagcagtttggttgaactcttatccttctcatttttcttcgcagtttgaccatc 606 ||||| || ||||| ||||||||||||||||| ||||||||||| ||| |||||||| Sbjct: 31042315 ccgcacgaggagttttgttgaactcttatccttttcatttttctt---agtctgaccatc 31042371 Query: 607 ctttctcccatggcatagttgtaagatcagagcatgcccatccaaaatcgttccct 662 ||||||||||| || ||||| ||||||| |||||| |||||||||| |||||||| Sbjct: 31042372 ttttctcccatgacacagttgcaagatcaaagcatgtccatccaaaaccgttccct 31042427 Score = 159 bits (80), Expect = 2e-35 Identities = 143/164 (87%) Strand = Plus / Plus Query: 192 attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 251 |||||||||||||||||||||||||||||||||||||||| || || || || || |||| Sbjct: 31041631 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 31041690 Query: 252 tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 311 || |||| | || |||||||||||||||||| || ||||||||||| ||||| || |||| Sbjct: 31041691 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 31041750 Query: 312 gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 355 | ||||||||||| |||||||| || || |||||||| |||||| Sbjct: 31041751 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 31041794 Score = 141 bits (71), Expect = 4e-30 Identities = 116/131 (88%) Strand = Plus / Plus Query: 359 tgtcggccgtagagatgagtgcttgccagggcttgcagggcgttctgtgcctcttgcttc 418 ||||| ||||||||||||||||| || || ||||| || |||||||| ||||||||||| Sbjct: 31041895 tgtcgcccgtagagatgagtgctcgcaagtgcttggagagcgttctgcgcctcttgcttt 31041954 Query: 419 gtgacgaattcgacaaacgcgaaacctctgtggcttccaaacttcataggcagcctgagg 478 ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||| |||||| Sbjct: 31041955 gtgacgaattcaacaaatgcgaaacccctgtgactcccaaacttcataggcagtctgagg 31042014 Query: 479 gttttgatctg 489 |||||||||| Sbjct: 31042015 cttttgatctg 31042025 Score = 71.9 bits (36), Expect = 3e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 660 cctgtaggtccttgcacacactggttgcagtttcaaccgaatcaaactcagcgaagccaa 719 ||||||| |||||||| |||||||||||||||||||| || || |||||| | ||||||| Sbjct: 31042520 cctgtagatccttgcagacactggttgcagtttcaactgagtcgaactcaacaaagccaa 31042579 Query: 720 atnccat 726 || |||| Sbjct: 31042580 atcccat 31042586
>emb|AL590065.3| Human DNA sequence from clone RP11-307A17 on chromosome X Contains a novel gene (MGC34831) and the 5' end of a novel gene( FLJ36601), complete sequence Length = 187386 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 83 aaatacaagagaagatagaaga 104 |||||||||||||||||||||| Sbjct: 166159 aaatacaagagaagatagaaga 166138
>ref|XM_574917.1| PREDICTED: Rattus norvegicus similar to LRRGT00194 (LOC499591), mRNA Length = 5148 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 84 aatacaagagaagatagaagag 105 |||||||||||||||||||||| Sbjct: 1629 aatacaagagaagatagaagag 1650
>emb|CT485605.3| RP43-010N04, complete sequence Length = 162117 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 83 aaatacaagagaagatagaaga 104 |||||||||||||||||||||| Sbjct: 144525 aaatacaagagaagatagaaga 144504
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 aaaaatacaagagaagatagaagag 105 ||||||| ||||||||||||||||| Sbjct: 123952 aaaaataaaagagaagatagaagag 123928
>emb|BX927391.6| Zebrafish DNA sequence from clone CH211-213B8 in linkage group 1, complete sequence Length = 146449 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 atttgttgccttgtattttac 176 ||||||||||||||||||||| Sbjct: 138860 atttgttgccttgtattttac 138840
>gb|AC117432.4| Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152631 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 tctactatccttgaaaactta 214 ||||||||||||||||||||| Sbjct: 11235 tctactatccttgaaaactta 11255
>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence Length = 187332 Score = 42.1 bits (21), Expect = 2.5 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 33 ttattttcncacacgagttgctgcagtttcttt 65 |||||||| ||||||||||| |||||||||||| Sbjct: 121709 ttattttc-cacacgagttgatgcagtttcttt 121740
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 aaaaatacaagagaagatagaagag 105 ||||||| ||||||||||||||||| Sbjct: 15714271 aaaaataaaagagaagatagaagag 15714247
>emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 in linkage group 1, complete sequence Length = 121976 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 atttgttgccttgtattttac 176 ||||||||||||||||||||| Sbjct: 87022 atttgttgccttgtattttac 87042
>gb|AC009471.5| Homo sapiens BAC clone RP11-168K7 from 2, complete sequence Length = 172445 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 agagatgagtgcttgccaggg 389 ||||||||||||||||||||| Sbjct: 147232 agagatgagtgcttgccaggg 147252
>gb|AC106719.4| Homo sapiens 3p BAC RP11-12J13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154652 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 tctactatccttgaaaactta 214 ||||||||||||||||||||| Sbjct: 43838 tctactatccttgaaaactta 43818
>gb|AC102506.9| Mus musculus chromosome 1, clone RP24-139E15, complete sequence Length = 151816 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 ctctgtggcttccaaacttca 464 ||||||||||||||||||||| Sbjct: 64717 ctctgtggcttccaaacttca 64697
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 81 aaaaatacaagagaagatagaagag 105 ||||||| ||||||||||||||||| Sbjct: 15801648 aaaaataaaagagaagatagaagag 15801624 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,593,753 Number of Sequences: 3902068 Number of extensions: 6593753 Number of successful extensions: 117539 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 117418 Number of HSP's gapped (non-prelim): 117 length of query: 730 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 707 effective length of database: 17,143,297,704 effective search space: 12120311476728 effective search space used: 12120311476728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
