Clone Information

BLAST Search Result

Clone Name	rbags20o02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_466811.1\| Oryza sativa (japonica cultivar-group), mRNA	214	3e-52
2	emb\|AJ487966.1\|OSA487966 Oryza sativa (japonica cultivar-group) ...	214	3e-52
3	dbj\|AK101388.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	214	3e-52
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	208	2e-50
5	dbj\|AP004053.3\| Oryza sativa (japonica cultivar-group) genomic D...	208	2e-50
6	gb\|AY112029.1\| Zea mays CL14517_1 mRNA sequence	88	4e-14
7	gb\|AY108823.1\| Zea mays PCO086435 mRNA sequence	68	4e-08
8	gb\|AC161056.5\| Mus musculus BAC clone RP23-241J7 from chromosome...	42	2.3
9	emb\|Z83856.2\|HSN113A11 Human DNA sequence from clone LL22NC03-11...	42	2.3
10	emb\|BX649406.10\| Zebrafish DNA sequence from clone CH211-203N20 ...	42	2.3
11	gb\|AC119868.2\| Homo sapiens chromosome 18, clone RP11-465I4, com...	42	2.3
12	gb\|AC068254.6\| Homo sapiens chromosome 18, clone RP11-543H23, co...	42	2.3
13	emb\|BX664627.16\| Zebrafish DNA sequence from clone DKEYP-55D11 i...	42	2.3
14	gb\|AC156581.4\| Pan troglodytes BAC clone CH251-372H22 from chrom...	42	2.3
15	gb\|AC123878.4\| Mus musculus BAC clone RP23-318I20 from 3, comple...	42	2.3
16	gb\|AC136746.15\| Mus musculus chromosome 5, clone RP23-151C5, com...	40	8.9
17	gb\|AC007393.3\| Homo sapiens BAC clone RP11-451J3 from 7, complet...	40	8.9
18	gb\|AC116568.5\| Mus musculus BAC clone RP23-34C4 from chromosome ...	40	8.9
19	emb\|CR385066.13\| Zebrafish DNA sequence from clone DKEY-220L23 i...	40	8.9
20	gb\|AC121829.3\| Mus musculus BAC clone RP23-480P21 from chromosom...	40	8.9
21	ref\|XM_862890.1\| PREDICTED: Canis familiaris similar to G patch ...	40	8.9
22	ref\|XM_848771.1\| PREDICTED: Canis familiaris similar to G patch ...	40	8.9
23	ref\|NM_181747.1\| Homo sapiens origin recognition complex, subuni...	40	8.9
24	emb\|AL359736.19\| Human DNA sequence from clone RP11-307N16 on ch...	40	8.9
25	emb\|AL359763.9\| Human DNA sequence from clone RP11-169O17 on chr...	40	8.9
26	gb\|AC124785.7\| Rattus norvegicus 4 BAC CH230-141I8 (Children's H...	40	8.9
27	emb\|BX511069.14\| Zebrafish DNA sequence from clone CH211-207I1 i...	40	8.9
28	gb\|AC087516.12\| Homo sapiens chromosome 15, clone RP11-475A13, c...	40	8.9
29	gb\|AC040977.10\| Homo sapiens chromosome 17, clone RP11-589P10, c...	40	8.9
30	gb\|AC027763.9\| Homo sapiens chromosome 17, clone RP11-530N7, com...	40	8.9
31	gb\|AC092546.4\| Homo sapiens BAC clone RP11-801O14 from 4, comple...	40	8.9
32	emb\|BX322589.16\| Zebrafish DNA sequence from clone CH211-283F6 i...	40	8.9
33	gb\|AC106886.3\| Homo sapiens chromosome 16 clone RP11-2C24, compl...	40	8.9
34	gb\|AC149602.1\| Mus musculus BAC clone RP24-116G21 from chromosom...	40	8.9
35	dbj\|AP004063.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
36	dbj\|AP004881.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.9
37	emb\|AL390334.4\|CNS06C7N Human chromosome 14 DNA sequence BAC R-6...	40	8.9
38	emb\|BX510957.15\| Zebrafish DNA sequence from clone DKEY-69C1 in ...	40	8.9
39	dbj\|AP000752.4\| Homo sapiens genomic DNA, chromosome 11q, clone:...	40	8.9
40	gb\|AF081459.1\|AF081459 Homo sapiens origin recognition complex s...	40	8.9
41	dbj\|AP004473.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	40	8.9

>ref|XM_466811.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2403

 Score =  214 bits (108), Expect = 3e-52
 Identities = 266/314 (84%), Gaps = 11/314 (3%)
 Strand = Plus / Minus

                                                                        
Query: 328  ttatttcctccggtctgcactaattgtaaggcgctcaaatgtccttagagtgggatcatc 387
            ||||||||| | ||| ||||| |||| |||||| ||||| ||||| | ||||||||||||
Sbjct: 1908 ttatttccttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatc 1849

                                                                        
Query: 388  atggatatttcttgcagttttcgacagcgacgaggacctggccctcgagtccagttgatt 447
            ||||| ||||||||||||||| |  |||||   |||||||| | || ||||| ||||| |
Sbjct: 1848 atggacatttcttgcagttttggtaagcga---ggacctggtc-tcaagtcctgttgact 1793

                                                                        
Query: 448  ggtgaagcctctgagtggttgatggacgactgctgccactactggttgggattaggtggc 507
            |||||||||||||  | |||||||| |||||||||||||| |||||||| |||||||   
Sbjct: 1792 ggtgaagcctctgcatagttgatgggcgactgctgccactgctggttggaattaggt--- 1736

                                                                        
Query: 508  tagtgcgagtcgggtcactgggctctccagaacttggtctgctacttgacaggagagcct 567
            || ||||  |||| ||| |||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 1735 tactgcggttcggatcaatgggatctccagaacttggtctgctgcttgacaagagagcct 1676

                                                                        
Query: 568  tccttcgatgtgctcccattccg---ggatgatgtaggccttcttttatctgaatcaaca 624
            ||||| |||||||||||||| ||    |||||||| ||||||||||||||| ||||||||
Sbjct: 1675 tcctt-gatgtgctcccattacgagatgatgatgtgggccttcttttatctaaatcaaca 1617

                          
Query: 625  gccatcttaggtgc 638
            ||| |||| |||||
Sbjct: 1616 gccgtcttgggtgc 1603

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>emb|AJ487966.1|OSA487966 Oryza sativa (japonica cultivar-group) partial mRNA for putative
            casein kinase I
          Length = 1939

 Score =  214 bits (108), Expect = 3e-52
 Identities = 266/314 (84%), Gaps = 11/314 (3%)
 Strand = Plus / Minus

                                                                        
Query: 328  ttatttcctccggtctgcactaattgtaaggcgctcaaatgtccttagagtgggatcatc 387
            ||||||||| | ||| ||||| |||| |||||| ||||| ||||| | ||||||||||||
Sbjct: 1392 ttatttccttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatc 1333

                                                                        
Query: 388  atggatatttcttgcagttttcgacagcgacgaggacctggccctcgagtccagttgatt 447
            ||||| ||||||||||||||| |  |||||   |||||||| | || ||||| ||||| |
Sbjct: 1332 atggacatttcttgcagttttggtaagcga---ggacctggtc-tcaagtcctgttgact 1277

                                                                        
Query: 448  ggtgaagcctctgagtggttgatggacgactgctgccactactggttgggattaggtggc 507
            |||||||||||||  | |||||||| |||||||||||||| |||||||| |||||||   
Sbjct: 1276 ggtgaagcctctgcatagttgatgggcgactgctgccactgctggttggaattaggt--- 1220

                                                                        
Query: 508  tagtgcgagtcgggtcactgggctctccagaacttggtctgctacttgacaggagagcct 567
            || ||||  |||| ||| |||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 1219 tactgcggttcggatcaatgggatctccagaacttggtctgctgcttgacaagagagcct 1160

                                                                        
Query: 568  tccttcgatgtgctcccattccg---ggatgatgtaggccttcttttatctgaatcaaca 624
            ||||| |||||||||||||| ||    |||||||| ||||||||||||||| ||||||||
Sbjct: 1159 tcctt-gatgtgctcccattacgagatgatgatgtgggccttcttttatctaaatcaaca 1101

                          
Query: 625  gccatcttaggtgc 638
            ||| |||| |||||
Sbjct: 1100 gccgtcttgggtgc 1087

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>dbj|AK101388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036G08, full
            insert sequence
          Length = 2403

 Score =  214 bits (108), Expect = 3e-52
 Identities = 266/314 (84%), Gaps = 11/314 (3%)
 Strand = Plus / Minus

                                                                        
Query: 328  ttatttcctccggtctgcactaattgtaaggcgctcaaatgtccttagagtgggatcatc 387
            ||||||||| | ||| ||||| |||| |||||| ||||| ||||| | ||||||||||||
Sbjct: 1908 ttatttccttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatc 1849

                                                                        
Query: 388  atggatatttcttgcagttttcgacagcgacgaggacctggccctcgagtccagttgatt 447
            ||||| ||||||||||||||| |  |||||   |||||||| | || ||||| ||||| |
Sbjct: 1848 atggacatttcttgcagttttggtaagcga---ggacctggtc-tcaagtcctgttgact 1793

                                                                        
Query: 448  ggtgaagcctctgagtggttgatggacgactgctgccactactggttgggattaggtggc 507
            |||||||||||||  | |||||||| |||||||||||||| |||||||| |||||||   
Sbjct: 1792 ggtgaagcctctgcatagttgatgggcgactgctgccactgctggttggaattaggt--- 1736

                                                                        
Query: 508  tagtgcgagtcgggtcactgggctctccagaacttggtctgctacttgacaggagagcct 567
            || ||||  |||| ||| |||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 1735 tactgcggttcggatcaatgggatctccagaacttggtctgctgcttgacaagagagcct 1676

                                                                        
Query: 568  tccttcgatgtgctcccattccg---ggatgatgtaggccttcttttatctgaatcaaca 624
            ||||| |||||||||||||| ||    |||||||| ||||||||||||||| ||||||||
Sbjct: 1675 tcctt-gatgtgctcccattacgagatgatgatgtgggccttcttttatctaaatcaaca 1617

                          
Query: 625  gccatcttaggtgc 638
            ||| |||| |||||
Sbjct: 1616 gccgtcttgggtgc 1603

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  208 bits (105), Expect = 2e-50
 Identities = 257/303 (84%), Gaps = 11/303 (3%)
 Strand = Plus / Minus

                                                                            
Query: 328      ttatttcctccggtctgcactaattgtaaggcgctcaaatgtccttagagtgggatcatc 387
                ||||||||| | ||| ||||| |||| |||||| ||||| ||||| | ||||||||||||
Sbjct: 24791648 ttatttccttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatc 24791589

                                                                            
Query: 388      atggatatttcttgcagttttcgacagcgacgaggacctggccctcgagtccagttgatt 447
                ||||| ||||||||||||||| |  |||||   |||||||| | || ||||| ||||| |
Sbjct: 24791588 atggacatttcttgcagttttggtaagcga---ggacctggtc-tcaagtcctgttgact 24791533

                                                                            
Query: 448      ggtgaagcctctgagtggttgatggacgactgctgccactactggttgggattaggtggc 507
                |||||||||||||  | |||||||| |||||||||||||| |||||||| |||||||   
Sbjct: 24791532 ggtgaagcctctgcatagttgatgggcgactgctgccactgctggttggaattaggt--- 24791476

                                                                            
Query: 508      tagtgcgagtcgggtcactgggctctccagaacttggtctgctacttgacaggagagcct 567
                || ||||  |||| ||| |||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 24791475 tactgcggttcggatcaatgggatctccagaacttggtctgctgcttgacaagagagcct 24791416

                                                                            
Query: 568      tccttcgatgtgctcccattccg---ggatgatgtaggccttcttttatctgaatcaaca 624
                ||||| |||||||||||||| ||    |||||||| ||||||||||||||| ||||||||
Sbjct: 24791415 tcctt-gatgtgctcccattacgagatgatgatgtgggccttcttttatctaaatcaaca 24791357

                   
Query: 625      gcc 627
                |||
Sbjct: 24791356 gcc 24791354



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 317      tcttcaaacttttatttcct 336
                ||||||||||||||||||||
Sbjct: 23984369 tcttcaaacttttatttcct 23984350

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>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1234_B11
          Length = 128095

 Score =  208 bits (105), Expect = 2e-50
 Identities = 257/303 (84%), Gaps = 11/303 (3%)
 Strand = Plus / Minus

                                                                         
Query: 328   ttatttcctccggtctgcactaattgtaaggcgctcaaatgtccttagagtgggatcatc 387
             ||||||||| | ||| ||||| |||| |||||| ||||| ||||| | ||||||||||||
Sbjct: 91296 ttatttccttctgtcagcactgattgaaaggcgttcaaaggtcctcaaagtgggatcatc 91237

                                                                         
Query: 388   atggatatttcttgcagttttcgacagcgacgaggacctggccctcgagtccagttgatt 447
             ||||| ||||||||||||||| |  |||||   |||||||| | || ||||| ||||| |
Sbjct: 91236 atggacatttcttgcagttttggtaagcga---ggacctggtc-tcaagtcctgttgact 91181

                                                                         
Query: 448   ggtgaagcctctgagtggttgatggacgactgctgccactactggttgggattaggtggc 507
             |||||||||||||  | |||||||| |||||||||||||| |||||||| |||||||   
Sbjct: 91180 ggtgaagcctctgcatagttgatgggcgactgctgccactgctggttggaattaggt--- 91124

                                                                         
Query: 508   tagtgcgagtcgggtcactgggctctccagaacttggtctgctacttgacaggagagcct 567
             || ||||  |||| ||| |||| |||||||||||||||||||| ||||||| ||||||||
Sbjct: 91123 tactgcggttcggatcaatgggatctccagaacttggtctgctgcttgacaagagagcct 91064

                                                                         
Query: 568   tccttcgatgtgctcccattccg---ggatgatgtaggccttcttttatctgaatcaaca 624
             ||||| |||||||||||||| ||    |||||||| ||||||||||||||| ||||||||
Sbjct: 91063 tcctt-gatgtgctcccattacgagatgatgatgtgggccttcttttatctaaatcaaca 91005

                
Query: 625   gcc 627
             |||
Sbjct: 91004 gcc 91002

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>gb|AY112029.1| Zea mays CL14517_1 mRNA sequence
          Length = 679

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 119/145 (82%), Gaps = 3/145 (2%)
 Strand = Plus / Plus

                                                                       
Query: 428 gccctcgagtccagttgattggtgaagcctctgagtggttgatggacgactgctgccact 487
           |||||| ||||||||||| ||||||||||| ||| ||||||||||||| |||||||  | 
Sbjct: 452 gccctcaagtccagttgactggtgaagcctttgattggttgatggacggctgctgctgcn 511

                                                                       
Query: 488 actggttgggattaggtggctagtgcgagtcgggtcactgggctctccagaacttggtct 547
               || |||| |||||||||| ||||| | ||||| ||||| ||||||||||    || 
Sbjct: 512 nnnngtcgggactaggtggctactgcgatttgggtcgctgggatctccagaac---ctcg 568

                                    
Query: 548 gctacttgacaggagagccttcctt 572
           ||| |||||||| ||||||||||||
Sbjct: 569 gctgcttgacagaagagccttcctt 593



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 605 ttcttttatctgaatcaacagccatcttaggtgccaacagtgaatc 650
           |||||||||||||||||||||||||||| | |||||  ||||||||
Sbjct: 625 ttcttttatctgaatcaacagccatcttggatgccataagtgaatc 670

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>gb|AY108823.1| Zea mays PCO086435 mRNA sequence
          Length = 588

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 130/160 (81%), Gaps = 4/160 (2%)
 Strand = Plus / Minus

                                                                       
Query: 428 gccctcgagtccagttgattggtgaagcctctgagtggttgatggacgactgctgccact 487
           |||||| ||||||||||| ||||||||||| ||| |||| |||||||| |||||||   |
Sbjct: 170 gccctcaagtccagttgagtggtgaagcctttgattggtcgatggacggctgctgctggt 111

                                                                       
Query: 488 actggttgggattaggtggctagtgcgagtcgggtcactgggctctccagaacttggtct 547
             |||| || | |||||||||  ||||| | || |||||||| ||||||||||    || 
Sbjct: 110 ggtggtcggaactaggtggctgctgcgatttggttcactggggtctccagaac---ctcg 54

                                                   
Query: 548 gctacttgacaggagagccttccttcgatgtgctcccatt 587
           | | |||||||| |||||||||||| |||||||| |||||
Sbjct: 53  gttgcttgacagaagagccttcctt-gatgtgcttccatt 15



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                       
Query: 330 atttcctccggtctgcactaattgtaaggcgctcaaatgtccttagagtgggatcatcat 389
           |||||||||  ||||| ||||| |||||||| |||||  |||| |  |||||||||||||
Sbjct: 267 atttcctcctctctgcgctaatagtaaggcgttcaaaactcctcattgtgggatcatcat 208

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>gb|AC161056.5| Mus musculus BAC clone RP23-241J7 from chromosome 3, complete sequence
          Length = 226878

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 515    agtcgggtcactgggctctcc 535
              |||||||||||||||||||||
Sbjct: 194901 agtcgggtcactgggctctcc 194921

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>emb|Z83856.2|HSN113A11 Human DNA sequence from clone LL22NC03-113A11 on chromosome 22
            Contains the 3' end of the DEPDC5 gene for DEP domain
            containing 5, complete sequence
          Length = 22634

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 313  ttactcttcaaacttttattt 333
            |||||||||||||||||||||
Sbjct: 2238 ttactcttcaaacttttattt 2258

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>emb|BX649406.10| Zebrafish DNA sequence from clone CH211-203N20 in linkage group 4
             Contains two CpG islands, complete sequence
          Length = 141237

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 116   ttttctttagccattcaaaag 136
             |||||||||||||||||||||
Sbjct: 56049 ttttctttagccattcaaaag 56029

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>gb|AC119868.2| Homo sapiens chromosome 18, clone RP11-465I4, complete sequence
          Length = 174780

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   caaaagaacagacattgaaat 151
             |||||||||||||||||||||
Sbjct: 46409 caaaagaacagacattgaaat 46429

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>gb|AC068254.6| Homo sapiens chromosome 18, clone RP11-543H23, complete sequence
          Length = 219260

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 131    caaaagaacagacattgaaat 151
              |||||||||||||||||||||
Sbjct: 190238 caaaagaacagacattgaaat 190258

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>emb|BX664627.16| Zebrafish DNA sequence from clone DKEYP-55D11 in linkage group 6,
             complete sequence
          Length = 206408

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 116   ttttctttagccattcaaaag 136
             |||||||||||||||||||||
Sbjct: 78106 ttttctttagccattcaaaag 78086

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>gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chromosome unknown,
            complete sequence
          Length = 188418

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 313  ttactcttcaaacttttattt 333
            |||||||||||||||||||||
Sbjct: 1320 ttactcttcaaacttttattt 1300

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>gb|AC123878.4| Mus musculus BAC clone RP23-318I20 from 3, complete sequence
          Length = 215121

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   agtcgggtcactgggctctcc 535
             |||||||||||||||||||||
Sbjct: 12329 agtcgggtcactgggctctcc 12309

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>gb|AC136746.15| Mus musculus chromosome 5, clone RP23-151C5, complete sequence
          Length = 195530

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   atcttgctgaccagtgagca 255
             ||||||||||||||||||||
Sbjct: 78621 atcttgctgaccagtgagca 78640

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>gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complete sequence
          Length = 71082

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ttcaaacttttatttcctcc 338
             ||||||||||||||||||||
Sbjct: 18378 ttcaaacttttatttcctcc 18397

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>gb|AC116568.5| Mus musculus BAC clone RP23-34C4 from chromosome 8, complete sequence
          Length = 218715

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 138  acagacattgaaataacagtgctc 161
            |||||||||||||||||| |||||
Sbjct: 4515 acagacattgaaataacaatgctc 4538

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>emb|CR385066.13| Zebrafish DNA sequence from clone DKEY-220L23 in linkage group 3,
              complete sequence
          Length = 238822

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ttttctttagccattcaaaa 135
              ||||||||||||||||||||
Sbjct: 190826 ttttctttagccattcaaaa 190807

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>gb|AC121829.3| Mus musculus BAC clone RP23-480P21 from chromosome 5, complete sequence
          Length = 197131

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    gaaagaatccaagtgcccac 287
              ||||||||||||||||||||
Sbjct: 131744 gaaagaatccaagtgcccac 131725

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>ref|XM_862890.1| PREDICTED: Canis familiaris similar to G patch domain containing 1,
           transcript variant 3 (LOC476495), mRNA
          Length = 3057

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 409 cgacagcgacgaggacctgg 428
           ||||||||||||||||||||
Sbjct: 32  cgacagcgacgaggacctgg 51

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>ref|XM_848771.1| PREDICTED: Canis familiaris similar to G patch domain containing 1,
           transcript variant 2 (LOC476495), mRNA
          Length = 3057

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 409 cgacagcgacgaggacctgg 428
           ||||||||||||||||||||
Sbjct: 32  cgacagcgacgaggacctgg 51

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>ref|NM_181747.1| Homo sapiens origin recognition complex, subunit 5-like (yeast)
            (ORC5L), transcript variant 2, mRNA
          Length = 1302

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  ttcaaacttttatttcctcc 338
            ||||||||||||||||||||
Sbjct: 1188 ttcaaacttttatttcctcc 1169

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>emb|AL359736.19| Human DNA sequence from clone RP11-307N16 on chromosome 13 Contains the
              gene for a novel protein (FLJ31208), three novel genes, a
              novel pseudogene and three CpG islands, complete sequence
          Length = 178850

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    acgttttctttagccattca 132
              ||||||||||||||||||||
Sbjct: 177816 acgttttctttagccattca 177835

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>emb|AL359763.9| Human DNA sequence from clone RP11-169O17 on chromosome 13 Contains
           a cytochrome c pseudogene, a novel gene, the ADPRTL1
           gene for ADP-ribosyltransferase (NAD+; poly (ADP-ribose)
           polymerase)-like protein 1 , part of a TPTE and PTEN
           homologous inositol lipid phosphatase (TPIP) pseudogene
           and four CpG islands, complete sequence
          Length = 190765

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 acgttttctttagccattca 132
           ||||||||||||||||||||
Sbjct: 966 acgttttctttagccattca 985

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>gb|AC124785.7| Rattus norvegicus 4 BAC CH230-141I8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 61619

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tttactcttcaaacttttat 331
             ||||||||||||||||||||
Sbjct: 56275 tttactcttcaaacttttat 56256

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>emb|BX511069.14| Zebrafish DNA sequence from clone CH211-207I1 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate dishevelled associated activator of
             morphogenesis 1 (DAAM1) and three novel genes, complete
             sequence
          Length = 89721

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ttttctttagccattcaaaa 135
             ||||||||||||||||||||
Sbjct: 75401 ttttctttagccattcaaaa 75420

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>gb|AC087516.12| Homo sapiens chromosome 15, clone RP11-475A13, complete sequence
          Length = 187299

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   atggatatttcttgcagttt 407
             ||||||||||||||||||||
Sbjct: 56867 atggatatttcttgcagttt 56848

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>gb|AC040977.10| Homo sapiens chromosome 17, clone RP11-589P10, complete sequence
          Length = 174741

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   acgttttctttagccattca 132
             ||||||||||||||||||||
Sbjct: 55267 acgttttctttagccattca 55248

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>gb|AC027763.9| Homo sapiens chromosome 17, clone RP11-530N7, complete sequence
          Length = 169770

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   acgttttctttagccattca 132
             ||||||||||||||||||||
Sbjct: 48698 acgttttctttagccattca 48717

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>gb|AC092546.4| Homo sapiens BAC clone RP11-801O14 from 4, complete sequence
          Length = 118981

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 270   aagaatccaagtgcccacactcat 293
             ||||||||||||| ||||||||||
Sbjct: 19094 aagaatccaagtggccacactcat 19117

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>emb|BX322589.16| Zebrafish DNA sequence from clone CH211-283F6 in linkage group 17,
             complete sequence
          Length = 153573

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 484   cactactggttgggattagg 503
             ||||||||||||||||||||
Sbjct: 43181 cactactggttgggattagg 43162

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>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence
          Length = 207950

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   gaaagaatccaagtgcccac 287
             ||||||||||||||||||||
Sbjct: 95824 gaaagaatccaagtgcccac 95805

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>gb|AC149602.1| Mus musculus BAC clone RP24-116G21 from chromosome 8, complete sequence
          Length = 158424

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   acagacattgaaataacagtgctc 161
             |||||||||||||||||| |||||
Sbjct: 68065 acagacattgaaataacaatgctc 68088

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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1476_F05
          Length = 125426

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   tcttcaaacttttatttcct 336
             ||||||||||||||||||||
Sbjct: 19407 tcttcaaacttttatttcct 19388

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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    tcttcaaacttttatttcct 336
              ||||||||||||||||||||
Sbjct: 118333 tcttcaaacttttatttcct 118314

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>emb|AL390334.4|CNS06C7N Human chromosome 14 DNA sequence BAC R-664B22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170011

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   gttttctttagccattcaaa 134
             ||||||||||||||||||||
Sbjct: 71421 gttttctttagccattcaaa 71402

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>emb|BX510957.15| Zebrafish DNA sequence from clone DKEY-69C1 in linkage group 20, complete
              sequence
          Length = 149635

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    ctaattgtaaggcgctcaaa 366
              ||||||||||||||||||||
Sbjct: 134355 ctaattgtaaggcgctcaaa 134374

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>dbj|AP000752.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-689N19, complete
             sequence
          Length = 194140

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   gctcaaatgtccttagagtg 379
             ||||||||||||||||||||
Sbjct: 35891 gctcaaatgtccttagagtg 35872

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>gb|AF081459.1|AF081459 Homo sapiens origin recognition complex subunit ORC5T (ORC5L) mRNA,
            alternatively spliced product, complete cds
          Length = 1244

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  ttcaaacttttatttcctcc 338
            ||||||||||||||||||||
Sbjct: 1130 ttcaaacttttatttcctcc 1111

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>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007,
             complete sequence
          Length = 92741

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 311   ttttactcttcaaacttttatttc 334
             |||||| |||||||||||||||||
Sbjct: 19339 ttttacccttcaaacttttatttc 19316


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,418,254
Number of Sequences: 3902068
Number of extensions: 5418254
Number of successful extensions: 98552
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98431
Number of HSP's gapped (non-prelim): 105
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result