ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20n22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U49387.1|TAU49387 Triticum aestivum adenylosuccinate syntheta... 714 0.0
2dbj|AK066881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
3gb|AY109844.1| Zea mays CL2010_1 mRNA sequence 206 6e-50
4gb|U49388.1|ZMU49388 Zea mays adenylosuccinate synthetase mRNA, ... 206 6e-50
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 167 5e-38
6gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare str... 167 5e-38
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 167 5e-38
8gb|AY106600.1| Zea mays PCO144935 mRNA sequence 78 4e-11
9ref|XM_469397.1| Oryza sativa (japonica cultivar-group), mRNA 70 9e-09
10gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 70 9e-09
11dbj|AK120407.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
12gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, com... 48 0.032
13gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete seq... 48 0.032
14emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, ... 48 0.032
15emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, B... 48 0.032
16dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 42 1.9
17gb|AF288738.1| Homo sapiens epidermal growth factor receptor (EG... 40 7.7
18gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.7
19gb|AC150635.4| Bos taurus BAC CH240-448P19 (Children's Hospital... 40 7.7
20gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, co... 40 7.7
21gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
22gb|AY588246.1| Homo sapiens epidermal growth factor receptor (er... 40 7.7
23gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Canc... 40 7.7
24ref|XM_567492.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 7.7
25gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence 40 7.7
26gb|AC146013.2| Pan troglodytes BAC clone RP43-128F23 from 7, com... 40 7.7
27emb|AL122018.37|HSDJ764D2 Human DNA sequence from clone RP4-764D... 40 7.7
28gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, com... 40 7.7
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
31gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, comp... 40 7.7
32gb|AC006977.3|AC006977 Homo sapiens PAC clone RP5-1091E12 from 7... 40 7.7
33dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
34dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
35emb|BX004969.5| Zebrafish DNA sequence from clone CH211-89C12 in... 40 7.7
36emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on ch... 40 7.7
37emb|AL845516.8| Zebrafish DNA sequence from clone DKEY-43F11, co... 40 7.7
38dbj|AK106865.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
39emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chr... 40 7.7
40emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on ch... 40 7.7
41gb|AC140790.3| Gallus gallus BAC clone TAM32-50D18 from chromoso... 40 7.7 
>gb|U49387.1|TAU49387 Triticum aestivum adenylosuccinate synthetase mRNA, partial cds
          Length = 1741

 Score =  714 bits (360), Expect = 0.0
 Identities = 502/541 (92%), Gaps = 10/541 (1%)
 Strand = Plus / Minus

                                                                        
Query: 26   ataccaccaaaccatcggtggaatctataagacaaaatgctaccaccaaacaaaaacatt 85
            ||||||||||||||| |||||| || | ||||||||||| |||||||||||   |||| |
Sbjct: 1692 ataccaccaaaccattggtggagtcga-aagacaaaatgttaccaccaaactctaacact 1634

                                                                        
Query: 86   gcatccttatggtgatatatcttgggacattccccggaaatcattattgcaggtattaca 145
            |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||
Sbjct: 1633 gcatccttatggtgatatatc--gggacatttcccggaaatcattattgcaggtattaca 1576

                                                                        
Query: 146  tcaccccgcctgccagtggcctgccgattgtattacccgctacaattggcaaatcaaggg 205
            |||||||||| |||||| || || |||| |||||||||||||| |||||||| |||||||
Sbjct: 1575 tcaccccgcccgccagtagcttgtcgatcgtattacccgctacgattggcaa-tcaaggg 1517

                                                                        
Query: 206  tgtgctgacacagcaatgctcacacccgcctagttaagactgaattattctgtccgatac 265
            |||||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||
Sbjct: 1516 tgtgctgacacagcaatgctcacaacggcctagttaagactgaattatttcgtccgatac 1457

                                                                        
Query: 266  aatagtacccgatcgagtttgccctttacttgtatatgagagcatccctcccaggtccga 325
            |||||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1456 aatagtaccaaatcgagtttgccctttacttgtatatcagagcatccctcccaggcccga 1397

                                                                        
Query: 326  caccaatgtagtggactggaacgccgacgagctcttctatcctctccacgtaacggcggg 385
            |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 1396 caccaatgtagtggactggaacaccggcgagctcttctatcctctccacgtaacggcggg 1337

                                                                        
Query: 386  cggcttggggggagttcactgtaacttcggacagaagagatgtcactgtcccacccagga 445
            | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1336 cagctt-gggggagttcactgtaacttcggacagaagatatgtcactgtcccacccagga 1278

                                                                        
Query: 446  agcacctcatagttgacctgtacttgctccagggtgtcaagatcccctgggaaggattgg 505
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1277 agcacctcatagttgacctgtacttgctccagggtgtcaagatcccctgggaaggatt-g 1219

                                                                        
Query: 506  tagtttctgtccatcaatttgatgattataagaaacacccagcttaattttctggtaacc 565
            |||||||| |||||| |||   ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1218 tagtttctctccatccatt---tgattataagaaacacccagcttaa-tttctggtaacc 1163

             
Query: 566  c 566
            |
Sbjct: 1162 c 1162
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>dbj|AK066881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J03, full
            insert sequence
          Length = 1662

 Score =  232 bits (117), Expect = 1e-57
 Identities = 229/263 (87%), Gaps = 5/263 (1%)
 Strand = Plus / Minus

                                                                        
Query: 290  tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 349
            ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 1487 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 1428

                                                                        
Query: 350  cgacgagctcttctatcctctccacgtaacggcgggcggcttggggggagttcactgtaa 409
            | || ||||||||||||||||| || || ||  |||| ||| ||||  ||||||||||||
Sbjct: 1427 caacaagctcttctatcctctcgacatagcgttgggcagctagggga-agttcactgtaa 1369

                                                                        
Query: 410  cttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctgtact 469
            || |||||||| || |||||||| | ||||||||| | ||||||||| ||||||||||||
Sbjct: 1368 ctccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctgtact 1309

                                                                        
Query: 470  tgctccagggtgtcaagatcccctgggaaggattggtagtttctgtccatcaatttgatg 529
            |||||||| || |||||||||||||||||||||| |||| ||||| ||||||    | ||
Sbjct: 1308 tgctccagagtatcaagatcccctgggaaggatt-gtagcttctgcccatca---ggttg 1253

                                   
Query: 530  attataagaaacacccagcttaa 552
             ||||||||||| ||||||||||
Sbjct: 1252 gttataagaaacccccagcttaa 1230
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>gb|AY109844.1| Zea mays CL2010_1 mRNA sequence
          Length = 1804

 Score =  206 bits (104), Expect = 6e-50
 Identities = 228/266 (85%), Gaps = 5/266 (1%)
 Strand = Plus / Minus

                                                                        
Query: 290  tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 349
            |||||||||||||||||||||| || |||||||| |||||||||||||| || ||||| |
Sbjct: 1473 tttacttgtatatgagagcatctctgccaggtccaacaccaatgtagtgcacgggaacac 1414

                                                                        
Query: 350  cgacgagctcttctatcctctccacgtaacggcgggcggcttggggggagttcactgtaa 409
            | || || ||||||||||||||||| ||  ||||||| ||||||||  ||||||  ||| 
Sbjct: 1413 caacaagttcttctatcctctccacatagaggcgggcagcttgggga-agttcatcgtat 1355

                                                                        
Query: 410  cttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctgtact 469
            ||||| |||||||| |||||||| | ||||||||| || |||||||||||||||||||||
Sbjct: 1354 cttcgaacagaagaaatgtcactttgccacccaggcagaacctcatagttgacctgtact 1295

                                                                        
Query: 470  tgctccagggtgtcaagatcccctgggaaggattggtagtttctgtccatcaatttgatg 529
            ||||| ||||| ||||||||||| |||||||||||  || |||||||||||| | ||   
Sbjct: 1294 tgctcaagggtatcaagatccccagggaaggattgc-agcttctgtccatcagtctggg- 1237

                                      
Query: 530  attataagaaacacccagcttaattt 555
              ||||||||||||||| ||||||||
Sbjct: 1236 --tataagaaacacccaccttaattt 1213
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>gb|U49388.1|ZMU49388 Zea mays adenylosuccinate synthetase mRNA, complete cds
          Length = 1835

 Score =  206 bits (104), Expect = 6e-50
 Identities = 228/266 (85%), Gaps = 5/266 (1%)
 Strand = Plus / Minus

                                                                        
Query: 290  tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 349
            |||||||||||||||||||||| || |||||||| |||||||||||||| || ||||| |
Sbjct: 1473 tttacttgtatatgagagcatctctgccaggtccaacaccaatgtagtgcacgggaacac 1414

                                                                        
Query: 350  cgacgagctcttctatcctctccacgtaacggcgggcggcttggggggagttcactgtaa 409
            | || || ||||||||||||||||| ||  ||||||| ||||||||  ||||||  ||| 
Sbjct: 1413 caacaagttcttctatcctctccacatagaggcgggcagcttgggga-agttcatcgtat 1355

                                                                        
Query: 410  cttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctgtact 469
            ||||| |||||||| |||||||| | ||||||||| || |||||||||||||||||||||
Sbjct: 1354 cttcgaacagaagaaatgtcactttgccacccaggcagaacctcatagttgacctgtact 1295

                                                                        
Query: 470  tgctccagggtgtcaagatcccctgggaaggattggtagtttctgtccatcaatttgatg 529
            ||||| ||||| ||||||||||| |||||||||||  || |||||||||||| | ||   
Sbjct: 1294 tgctcaagggtatcaagatccccagggaaggattgc-agcttctgtccatcagtctggg- 1237

                                      
Query: 530  attataagaaacacccagcttaattt 555
              ||||||||||||||| ||||||||
Sbjct: 1236 --tataagaaacacccaccttaattt 1213
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  167 bits (84), Expect = 5e-38
 Identities = 154/176 (87%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                           
Query: 290     tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 349
               ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 3968701 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 3968760

                                                                           
Query: 350     cgacgagctcttctatcctctccacgtaacggcgggcggcttggggggagttcactgtaa 409
               | || ||||||||||||||||| || || ||  |||| || | |||| ||||||||||||
Sbjct: 3968761 caacaagctcttctatcctctcgacatagcgttgggcagc-taggggaagttcactgtaa 3968819

                                                                       
Query: 410     cttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctg 465
               || |||||||| || |||||||| | ||||||||| | ||||||||| ||||||||
Sbjct: 3968820 ctccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctg 3968875



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/92 (86%), Gaps = 4/92 (4%)
 Strand = Plus / Plus

                                                                           
Query: 461     acctgtacttgctccagggtgtcaagatcccctgggaaggattggtagtttctgtccatc 520
               ||||||||||||||||| || |||||||||||||||||||||| |||| ||||| |||||
Sbjct: 3969102 acctgtacttgctccagagtatcaagatcccctgggaaggatt-gtagcttctgcccatc 3969160

                                               
Query: 521     aatttgatgattataagaaacacccagcttaa 552
               |    | || ||||||||||| ||||||||||
Sbjct: 3969161 a---ggttggttataagaaacccccagcttaa 3969189



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 295      ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 354
                ||||||||||||||||| | ||| ||||| || || ||||| |||||||| |  || || 
Sbjct: 27747371 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 27747312

                                       
Query: 355      agctcttctatcctctccacgta 377
                |||||||||||||||||||||||
Sbjct: 27747311 agctcttctatcctctccacgta 27747289
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>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score =  167 bits (84), Expect = 5e-38
 Identities = 154/176 (87%), Gaps = 1/176 (0%)
 Strand = Plus / Minus

                                                                          
Query: 290    tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 349
              ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 130667 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 130608

                                                                          
Query: 350    cgacgagctcttctatcctctccacgtaacggcgggcggcttggggggagttcactgtaa 409
              | || ||||||||||||||||| || || ||  |||| || | |||| ||||||||||||
Sbjct: 130607 caacaagctcttctatcctctcgacatagcgttgggcagc-taggggaagttcactgtaa 130549

                                                                      
Query: 410    cttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctg 465
              || |||||||| || |||||||| | ||||||||| | ||||||||| ||||||||
Sbjct: 130548 ctccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctg 130493



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/92 (86%), Gaps = 4/92 (4%)
 Strand = Plus / Minus

                                                                          
Query: 461    acctgtacttgctccagggtgtcaagatcccctgggaaggattggtagtttctgtccatc 520
              ||||||||||||||||| || |||||||||||||||||||||| |||| ||||| |||||
Sbjct: 130266 acctgtacttgctccagagtatcaagatcccctgggaaggatt-gtagcttctgcccatc 130208

                                              
Query: 521    aatttgatgattataagaaacacccagcttaa 552
              |    | || ||||||||||| ||||||||||
Sbjct: 130207 a---ggttggttataagaaacccccagcttaa 130179
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  167 bits (84), Expect = 5e-38
 Identities = 154/176 (87%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                           
Query: 290     tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 349
               ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 3968812 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 3968871

                                                                           
Query: 350     cgacgagctcttctatcctctccacgtaacggcgggcggcttggggggagttcactgtaa 409
               | || ||||||||||||||||| || || ||  |||| || | |||| ||||||||||||
Sbjct: 3968872 caacaagctcttctatcctctcgacatagcgttgggcagc-taggggaagttcactgtaa 3968930

                                                                       
Query: 410     cttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctg 465
               || |||||||| || |||||||| | ||||||||| | ||||||||| ||||||||
Sbjct: 3968931 ctccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctg 3968986



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/92 (86%), Gaps = 4/92 (4%)
 Strand = Plus / Plus

                                                                           
Query: 461     acctgtacttgctccagggtgtcaagatcccctgggaaggattggtagtttctgtccatc 520
               ||||||||||||||||| || |||||||||||||||||||||| |||| ||||| |||||
Sbjct: 3969213 acctgtacttgctccagagtatcaagatcccctgggaaggatt-gtagcttctgcccatc 3969271

                                               
Query: 521     aatttgatgattataagaaacacccagcttaa 552
               |    | || ||||||||||| ||||||||||
Sbjct: 3969272 a---ggttggttataagaaacccccagcttaa 3969300



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 295      ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 354
                ||||||||||||||||| | ||| ||||| || || ||||| |||||||| |  || || 
Sbjct: 27838694 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 27838635

                                       
Query: 355      agctcttctatcctctccacgta 377
                |||||||||||||||||||||||
Sbjct: 27838634 agctcttctatcctctccacgta 27838612
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>gb|AY106600.1| Zea mays PCO144935 mRNA sequence
          Length = 432

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 295 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 354
           ||||||||||| || || |  ||||| ||||||||||||||||| ||||||| |||||| 
Sbjct: 287 ttgtatatgagggcgtcgcgtccaggcccgacaccaatgtagtgtactggaatgccgacc 228

                                  
Query: 355 agctcttctatcctctccacgta 377
           || || |||||||||||||||||
Sbjct: 227 agttcctctatcctctccacgta 205
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>ref|XM_469397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1470

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 354
            ||||||||||||||||| | ||| ||||| || || ||||| |||||||| |  || || 
Sbjct: 1466 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 1407

                                   
Query: 355  agctcttctatcctctccacgta 377
            |||||||||||||||||||||||
Sbjct: 1406 agctcttctatcctctccacgta 1384
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                         
Query: 295   ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 354
             ||||||||||||||||| | ||| ||||| || || ||||| |||||||| |  || || 
Sbjct: 66523 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 66582

                                    
Query: 355   agctcttctatcctctccacgta 377
             |||||||||||||||||||||||
Sbjct: 66583 agctcttctatcctctccacgta 66605
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>dbj|AK120407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091H09, full
            insert sequence
          Length = 1742

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 295  ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 354
            ||||||||||||||||| | ||| ||||| || || ||||| |||||||| |  || || 
Sbjct: 1508 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 1449

                                   
Query: 355  agctcttctatcctctccacgta 377
            |||||||||||||||||||||||
Sbjct: 1448 agctcttctatcctctccacgta 1426
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>gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, complete sequence
          Length = 174779

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 515    tccatcaatttgatgattataagaaaca 542
              ||||||||||||||| ||||||||||||
Sbjct: 154661 tccatcaatttgatgcttataagaaaca 154688
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>gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete sequence
          Length = 111446

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                         
Query: 299   atatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacgagct 358
             ||||||||||||| |  ||||| || |||||||||||||| |  || || || ||||| |
Sbjct: 66201 atatgagagcatcacgtccaggcccaacaccaatgtagtgaatagggacaccaacgagtt 66142

                             
Query: 359   cttctatcctctccac 374
             |||||||||| |||||
Sbjct: 66141 cttctatcctttccac 66126
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>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
          Length = 199577

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 53     taagacaaaatgctaccaccaaacaaaa 80
              ||||| ||||||||||||||||||||||
Sbjct: 183200 taagaaaaaatgctaccaccaaacaaaa 183227
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>emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII
             project)
          Length = 89350

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 53    taagacaaaatgctaccaccaaacaaaa 80
             ||||| ||||||||||||||||||||||
Sbjct: 39531 taagaaaaaatgctaccaccaaacaaaa 39558
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 126     tcattattgcaggtattacat 146
               |||||||||||||||||||||
Sbjct: 3908044 tcattattgcaggtattacat 3908064
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>gb|AF288738.1| Homo sapiens epidermal growth factor receptor (EGFR) gene, complete
             cds, alternatively spliced; and 5S ribosomal RNA gene,
             complete sequence
          Length = 197496

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   agagatgtcactgtcccacc 440
             ||||||||||||||||||||
Sbjct: 57194 agagatgtcactgtcccacc 57175
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>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 304    agagcatccctcccaggtccgaca 327
              ||||||||| ||||||||||||||
Sbjct: 322413 agagcatccttcccaggtccgaca 322390
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>gb|AC150635.4| Bos taurus  BAC CH240-448P19 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 151766

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 498    aggattggtagtttctgtccatcaatttgatg 529
              |||| |||||| || |||||||||||||||||
Sbjct: 120794 aggagtggtagattatgtccatcaatttgatg 120763
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>gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, complete sequence
          Length = 228206

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    gggtgtgctgacacagcaat 222
              ||||||||||||||||||||
Sbjct: 186618 gggtgtgctgacacagcaat 186599
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>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13,
              complete sequence
          Length = 143966

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    ggaacgccgacgagctcttc 362
              ||||||||||||||||||||
Sbjct: 136092 ggaacgccgacgagctcttc 136111
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>gb|AY588246.1| Homo sapiens epidermal growth factor receptor (erythroblastic leukemia
             viral (v-erb-b) oncogene homolog, avian) (EGFR) gene,
             complete cds
          Length = 192168

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   agagatgtcactgtcccacc 440
             ||||||||||||||||||||
Sbjct: 49911 agagatgtcactgtcccacc 49892
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>gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208808

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    gggtgtgctgacacagcaat 222
              ||||||||||||||||||||
Sbjct: 177619 gggtgtgctgacacagcaat 177638
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>ref|XM_567492.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNJ01140) partial mRNA
          Length = 630

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 304 agagcatccctcccaggtccgaca 327
           ||||||||| ||||||||||||||
Sbjct: 215 agagcatccttcccaggtccgaca 192
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>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence
          Length = 202386

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 506    tagtttctgtccatcaatttgatg 529
              |||||||||||||| |||||||||
Sbjct: 162483 tagtttctgtccattaatttgatg 162460
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>gb|AC146013.2| Pan troglodytes BAC clone RP43-128F23 from 7, complete sequence
          Length = 191821

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    agagatgtcactgtcccacc 440
              ||||||||||||||||||||
Sbjct: 139216 agagatgtcactgtcccacc 139235
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>emb|AL122018.37|HSDJ764D2 Human DNA sequence from clone RP4-764D2 on chromosome 1q42.2-43 Contains
              the 5' end of the NID gene for  nidogen (enactin) protein,
              an aconitase 2, mitochondrial (ACO2) pseudogene, the 5' end
              of the TM7SF1 gene for transmembrane 7 superfamily member 1
              (upregulated in kidney) and two CpG islands, complete
              sequence
          Length = 128811

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    ccgcctgccagtggcctgcc 170
              ||||||||||||||||||||
Sbjct: 101421 ccgcctgccagtggcctgcc 101440
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>gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   agggtgtcaagatcccctgg 495
             ||||||||||||||||||||
Sbjct: 67577 agggtgtcaagatcccctgg 67596
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 521      aatttgatgattataagaaa 540
                ||||||||||||||||||||
Sbjct: 27852801 aatttgatgattataagaaa 27852820
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 343     ggaacgccgacgagctcttc 362
               ||||||||||||||||||||
Sbjct: 6434353 ggaacgccgacgagctcttc 6434372
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>gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, complete sequence
          Length = 219070

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 426    tgtcactgtcccacccaggaagca 449
              ||||||||||||||||||| ||||
Sbjct: 121406 tgtcactgtcccacccagggagca 121383
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>gb|AC006977.3|AC006977 Homo sapiens PAC clone RP5-1091E12 from 7p11.2-p21, complete sequence
          Length = 177998

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   agagatgtcactgtcccacc 440
             ||||||||||||||||||||
Sbjct: 57194 agagatgtcactgtcccacc 57175
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>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   aatttgatgattataagaaa 540
             ||||||||||||||||||||
Sbjct: 16159 aatttgatgattataagaaa 16178
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496C02
          Length = 148419

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    aatttgatgattataagaaa 540
              ||||||||||||||||||||
Sbjct: 145180 aatttgatgattataagaaa 145199
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>emb|BX004969.5| Zebrafish DNA sequence from clone CH211-89C12 in linkage group 7,
             complete sequence
          Length = 161142

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 517   catcaatttgatgattataa 536
             ||||||||||||||||||||
Sbjct: 56340 catcaatttgatgattataa 56321
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>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete
              sequence
          Length = 230114

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 506    tagtttctgtccatcaatttgatg 529
              |||||||||||||| |||||||||
Sbjct: 146326 tagtttctgtccattaatttgatg 146303
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>emb|AL845516.8| Zebrafish DNA sequence from clone DKEY-43F11, complete sequence
          Length = 205826

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 517    catcaatttgatgattataa 536
              ||||||||||||||||||||
Sbjct: 186655 catcaatttgatgattataa 186674
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>dbj|AK106865.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C11, full
            insert sequence
          Length = 2055

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  ggaacgccgacgagctcttc 362
            ||||||||||||||||||||
Sbjct: 1041 ggaacgccgacgagctcttc 1060
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>emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chromosome X, complete
              sequence
          Length = 218612

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    agttaagactgaattattct 256
              ||||||||||||||||||||
Sbjct: 176386 agttaagactgaattattct 176367
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>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete
             sequence
          Length = 207724

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   gtgtgctgacacagcaatgc 224
             ||||||||||||||||||||
Sbjct: 13962 gtgtgctgacacagcaatgc 13943
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>gb|AC140790.3| Gallus gallus BAC clone TAM32-50D18 from chromosome ul, complete
             sequence
          Length = 176981

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 416   acagaagagatgtcactgtc 435
             ||||||||||||||||||||
Sbjct: 10965 acagaagagatgtcactgtc 10946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,779,451
Number of Sequences: 3902068
Number of extensions: 4779451
Number of successful extensions: 83567
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83275
Number of HSP's gapped (non-prelim): 281
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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