ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21c21 |
|---|---|
| Clone Library Name | barley_pub |
>CUCM1_CUCME (Q39547) Cucumisin precursor (EC 3.4.21.25) (Allergen Cuc m 1)| Length = 731 Score = 36.6 bits (83), Expect = 0.016 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%) Frame = -3 Query: 346 DATHQXXIXFLCSIPDVDPSXVSNIXGSRCSPSQKRQGP-YDLNIPSITVSQLKG---TQ 179 DA + FLC + V I G + + G +DLN PS +S Q Sbjct: 591 DANESDYVKFLCG-QGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQ 649 Query: 178 TVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALT 71 RT+T+VA +A TY M + + V+P L+ Sbjct: 650 YFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLS 685
>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)| (Cucumisin-like serine protease) Length = 757 Score = 32.7 bits (73), Expect = 0.23 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Frame = -3 Query: 346 DATHQXXIXFLCSIPDVDPSXVS-NIXGSRCSPSQKRQGPYDLNIPSITVS-QLKGTQTV 173 D T + + FLC++ P S + C PS K DLN PS V+ G Sbjct: 617 DLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPS-KSYSVADLNYPSFAVNVDGVGAYKY 675 Query: 172 KRTVTNVADEAETYTI-MTRMSPEIALDVSPPAL 74 RTVT+V A TY++ +T + + + V P L Sbjct: 676 TRTVTSVGG-AGTYSVKVTSETTGVKISVEPAVL 708
>XSP1_ARATH (Q9LLL8) Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1)| (Cucumisin-like protein) Length = 749 Score = 31.6 bits (70), Expect = 0.50 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 8/100 (8%) Frame = -3 Query: 325 IXFLCSIPDVDPSXVSNIXGSR---CSPSQKRQGPYDLNIPSITVSQLKGTQT-----VK 170 + FLC + + ++ + G+R CS G LN P+I ++ L+ +T + Sbjct: 609 VQFLCG-EGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLT-LRSAKTSTLAVFR 666 Query: 169 RTVTNVADEAETYTIMTRMSPEIALDVSPPALTVLPGSSR 50 R VTNV + YT R + + V P +L+ S + Sbjct: 667 RRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQK 706
>CYTSA_XENTR (Q2KN96) Cytospin-A| Length = 1101 Score = 29.6 bits (65), Expect = 1.9 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Frame = -3 Query: 265 SRCSPSQKRQGPYDLNIPSITVSQLKGTQTVKRTVTNVAD--EAETYTIMTRMSPEIALD 92 SR + S R D N SI+VS+ + ++ +KR ++ V D A + +MT SP+++L Sbjct: 906 SRSAASLPRVPAID-NAKSISVSR-RSSEELKRDIS-VPDGSSAPSLMVMTSPSPQLSLS 962 Query: 91 VSPPALTVLPGSSREI 44 S P +V P + I Sbjct: 963 SSSPTASVTPTARSRI 978
>COX2_PAPHA (P68298) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 193 LKGTQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 L T T K T TN+ D E TI T + I + ++ P+L +L Sbjct: 42 LSSTLTTKLTNTNITDAQEMETIWTILPAVILILIALPSLRIL 84
>COX2_PAPAN (P68297) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 193 LKGTQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 L T T K T TN+ D E TI T + I + ++ P+L +L Sbjct: 42 LSSTLTTKLTNTNITDAQEMETIWTILPAVILILIALPSLRIL 84
>COX2_THEGE (P98044) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 193 LKGTQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 L T T K T TN+ D E TI T + I + ++ P+L +L Sbjct: 42 LSATLTTKLTNTNITDAQEMETIWTILPAVILVLIALPSLRIL 84
>COX2_PONPY (Q37605) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 184 TQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 T T K T TN++D E TI T + I + ++ P+L +L Sbjct: 45 TLTTKLTNTNISDAQEMETIWTTLPAIILILIALPSLRIL 84
>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7| Length = 695 Score = 28.5 bits (62), Expect = 4.3 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 4/91 (4%) Frame = -3 Query: 304 PDVDPSXVSNIXGSRCSPSQKRQGPYDLNIPSITVSQLKGTQTVK----RTVTNVADEAE 137 P V N S S + P + T + G+ + RT + +A AE Sbjct: 380 PSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSPLASNAE 439 Query: 136 TYTIMTRMSPEIALDVSPPALTVLPGSSREI 44 + + SP + L PP T +SRE+ Sbjct: 440 NKPPVAQQSPPVLLPTLPPIQTTTIQTSREV 470
>COX2_MACFA (P11948) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -3 Query: 184 TQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 T T K T TN+ D E TI T + I + ++ P+L VL Sbjct: 45 TLTTKLTNTNITDAQEMETIWTILPAVILILIALPSLRVL 84
>VEGFD_HUMAN (O43915) Vascular endothelial growth factor D precursor (VEGF-D)| (c-fos-induced growth factor) (FIGF) Length = 354 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -3 Query: 316 LCSIPDVDPSXVSNIXGSRCSPSQKRQGPYDLNIPSITVSQ 194 L S+P++ P V+N G +C P+ R PY + SI + + Sbjct: 172 LTSVPELVPVKVANHTGCKCLPTAPRH-PYSIIRRSIQIPE 211
>COX2_PONPP (P92721) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 184 TQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 T T K T TN++D E TI T + I + ++ P+L +L Sbjct: 45 TLTTKLTNTNISDAQEMETIWTILPAIILILIALPSLRIL 84
>COX2_MANLE (P98037) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = -3 Query: 217 IPSITVSQLKGTQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 I + + L T T K T TN+ D E TI T + I + ++ P+L +L Sbjct: 34 ISLLVLYALFSTLTTKMTNTNITDAQEMETIWTILPAIILVLIAFPSLRIL 84
>COX2_GORGO (P26456) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -3 Query: 184 TQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 T T K T TN++D E TI T + I + ++ P+L +L Sbjct: 45 TLTTKLTSTNISDAQEMETIWTILPAIILVLIALPSLRIL 84
>CDK9_SCHPO (Q96WV9) Serine/threonine-protein kinase cdk9 (EC 2.7.11.1)| (Cyclin-dependent kinase cdk9) Length = 591 Score = 28.1 bits (61), Expect = 5.6 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 2/89 (2%) Frame = -2 Query: 320 ILVLDP*RRSKXS--IKHXRLTLQPQPEETGTL*SEHPLDHGVTAQRDADREADSHERG* 147 IL L+P R S ++H T P P L S +A + D+ +R Sbjct: 319 ILTLNPDERLSASMALEHEYFTTPPYPANPSELQS-------YSASHEYDKRRKREQRD- 370 Query: 146 *GRNLHHHDQDVAGDRAGRLTSRADGAPW 60 N H +Q G R R +R PW Sbjct: 371 --ANSHAFEQTANGKRQFRFMTRGPSDPW 397
>SACS_MOUSE (Q9JLC8) Sacsin| Length = 3830 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 119 GHDGVGFCLISHVRDCP 169 GH G+GF + H+ DCP Sbjct: 1870 GHYGIGFNSVYHITDCP 1886
>GC3M_MOUSE (P03987) Ig gamma-3 chain C region, membrane-bound form| Length = 398 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -3 Query: 268 GSRCSPSQKRQGPYDLNIPSITVSQLKGTQTVKRTVTNVADEAETYTIMTRMSPEIALDV 89 G R S + G Y L+ S +QTV + NVA A ++ R+ P I Sbjct: 48 GVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTV---ICNVAHPASKTELIKRIEPRIPKPS 104 Query: 88 SPPALTVLPGS 56 +PP + PG+ Sbjct: 105 TPPGSSCPPGN 115
>LRP10_HUMAN (Q7Z4F1) Low-density lipoprotein receptor-related protein 10| precursor Length = 713 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/95 (21%), Positives = 41/95 (43%) Frame = -3 Query: 337 HQXXIXFLCSIPDVDPSXVSNIXGSRCSPSQKRQGPYDLNIPSITVSQLKGTQTVKRTVT 158 H I F + P+ + + G+ P + N + + + T T++ Sbjct: 17 HPDRIIFPNHACEDPPAVLLEVQGTLQRPLVRDSRTSPANCTWLILGSKEQTVTIRFQKL 76 Query: 157 NVADEAETYTIMTRMSPEIALDVSPPALTVLPGSS 53 ++A +E T+ + + P I+L +PP+ LPG + Sbjct: 77 HLACGSERLTLRSPLQPLISLCEAPPSPLQLPGGN 111
>GC3_MOUSE (P22436) Ig gamma-3 chain C region, secreted form| Length = 329 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -3 Query: 268 GSRCSPSQKRQGPYDLNIPSITVSQLKGTQTVKRTVTNVADEAETYTIMTRMSPEIALDV 89 G R S + G Y L+ S +QTV + NVA A ++ R+ P I Sbjct: 48 GVRTVSSVLQSGFYSLSSLVTVPSSTWPSQTV---ICNVAHPASKTELIKRIEPRIPKPS 104 Query: 88 SPPALTVLPGS 56 +PP + PG+ Sbjct: 105 TPPGSSCPPGN 115
>MURB_BRUSU (Q8FZP4) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 322 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = -2 Query: 308 DP*RRSKXSIKHXRLTLQPQPEETGTL*SEHPLDHGVTAQRDADR 174 D RR+ ++H R T+QP E+TG ++P G +A ++ D+ Sbjct: 205 DDIRRAMDEVQHHRETVQPVREKTGGSTFKNP--EGTSAWKEIDK 247
>MURB_BRUME (Q8YI64) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 322 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = -2 Query: 308 DP*RRSKXSIKHXRLTLQPQPEETGTL*SEHPLDHGVTAQRDADR 174 D RR+ ++H R T+QP E+TG ++P G +A ++ D+ Sbjct: 205 DDIRRAMDEVQHHRETVQPVREKTGGSTFKNP--EGTSAWKEIDK 247
>COX2_GORBE (Q37472) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -3 Query: 184 TQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 T T K T TN++D E T+ T + I + ++ P+L +L Sbjct: 45 TLTTKLTSTNISDAQEMETVWTILPAIILVLIALPSLRIL 84
>SURE_PSEHT (Q3IDD3) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 254 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = -3 Query: 283 VSNIXGSRCSPSQKRQGPYDLNIPSITVSQLKGTQTVKRTVTNVADEAETYTIMT 119 +S I G P K Q ++N+P I +S+LKG Q T +AET T T Sbjct: 140 ISIIKGLASHPLPKDQ-IININVPDIPLSELKGVQV---TRLGARHKAETMTKQT 190
>SLAP_BACST (P35825) S-layer protein precursor (Surface layer protein)| Length = 1228 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 214 PSITVSQLKGTQTVKRTVTNVADEAETYTIM 122 P+IT+ + GT T+ NV +E +TY I+ Sbjct: 1034 PTITLKKADGTSFTNYTLVNVNNENKTYKIV 1064
>Y1380_YERPE (Q8ZGC3) MFS-type transporter protein YPO1380/y2792.1/YP1213| Length = 382 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 104 LRRHPGHDGVGFCLISHVRDCPLHGLRPFEL*HRDRGDVQI 226 L+R G+ C+IS V L+GL P L H+ D + Sbjct: 197 LKRRSARLGINGCIISGVLLGSLYGLLPLYLSHKGMSDASV 237
>VEGFD_RAT (O35251) Vascular endothelial growth factor D precursor (VEGF-D)| (c-fos-induced growth factor) (FIGF) Length = 326 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = -3 Query: 316 LCSIPDVDPSXVSNIXGSRCSPSQKRQGPYDLNIPSITVSQ 194 L S+P++ P ++N G +C P+ R PY + SI + + Sbjct: 177 LTSVPELVPVKIANHTGCKCLPTGPRH-PYSIIRRSIQIPE 216
>COX2_HUMAN (P00403) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -3 Query: 184 TQTVKRTVTNVADEAETYTIMTRMSPEIALDVSPPALTVL 65 T T K T TN++D E T+ T + I + ++ P+L +L Sbjct: 45 TLTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRIL 84
>ALBUB_XENLA (P14872) Serum albumin B precursor (74 kDa serum albumin)| Length = 607 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 275 HXRLTLQPQPEETGTL*SEHPLD 207 H +++P+PEET L EHP D Sbjct: 134 HEHTSIKPEPEETCKLLKEHPDD 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,830,715 Number of Sequences: 219361 Number of extensions: 782526 Number of successful extensions: 2140 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2140 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
