| Clone Name | rbags20n20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRNA, complete cds Length = 1867 Score = 99.6 bits (50), Expect = 6e-19 Identities = 54/56 (96%) Strand = Plus / Minus Query: 1 caacaccattcaccacggtctccatcggnccnggcttattgctaccacccacagcg 56 |||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 1732 caacaccattcaccacggtctccatcggcccaggcttattgctaccacccacagcg 1677
>emb|BX537347.12| Zebrafish DNA sequence from clone RP71-78P1 in linkage group 4, complete sequence Length = 197064 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 ggcttattgctaccacccacagc 55 |||||||||||| |||||||||| Sbjct: 20156 ggcttattgctaacacccacagc 20178
>gb|AY645032.1| Episyrphus balteatus hairy mRNA, partial cds Length = 1527 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 attcaccacggtctccat 25 |||||||||||||||||| Sbjct: 908 attcaccacggtctccat 891
>gb|AY536581.1| Neurospora crassa phytase gene, partial cds Length = 1591 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 caacaccattcaccacggtctc 22 ||||||||| |||||||||||| Sbjct: 576 caacaccatgcaccacggtctc 597
>ref|XM_957292.1| Neurospora crassa OR74A hypothetical protein (NCU06351.1) partial mRNA Length = 1791 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 caacaccattcaccacggtctc 22 ||||||||| |||||||||||| Sbjct: 885 caacaccatgcaccacggtctc 906
>ref|XM_326205.1| Neurospora crassa OR74A hypothetical protein (NCU06351.1) partial mRNA Length = 1791 Score = 36.2 bits (18), Expect = 8.0 Identities = 21/22 (95%) Strand = Plus / Plus Query: 1 caacaccattcaccacggtctc 22 ||||||||| |||||||||||| Sbjct: 885 caacaccatgcaccacggtctc 906
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 caccacggtctccatcgg 28 |||||||||||||||||| Sbjct: 12623685 caccacggtctccatcgg 12623702
>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence Length = 181095 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 39 ttgctaccacccacagcg 56 |||||||||||||||||| Sbjct: 94417 ttgctaccacccacagcg 94434
>ref|XM_808675.1| Trypanosoma cruzi strain CL Brener pantothenate kinase subunit (Tc00.1047053511153.120) partial mRNA Length = 4443 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 cattcaccacggtctcca 24 |||||||||||||||||| Sbjct: 1744 cattcaccacggtctcca 1727
>ref|XM_810446.1| Trypanosoma cruzi strain CL Brener pantothenate kinase subunit (Tc00.1047053506779.80) partial mRNA Length = 4443 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 cattcaccacggtctcca 24 |||||||||||||||||| Sbjct: 1744 cattcaccacggtctcca 1727
>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete sequence Length = 176561 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 37 tattgctaccacccacag 54 |||||||||||||||||| Sbjct: 81606 tattgctaccacccacag 81589
>ref|XM_783396.1| PREDICTED: Strongylocentrotus purpuratus similar to deleted in malignant brain tumors 1 isoform c precursor (LOC583490), mRNA Length = 2094 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 36 ttattgctaccacccaca 53 |||||||||||||||||| Sbjct: 1133 ttattgctaccacccaca 1116
>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0030D15, from chromosome 3, complete sequence Length = 151972 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 caccacggtctccatcgg 28 |||||||||||||||||| Sbjct: 53304 caccacggtctccatcgg 53287
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 11 caccacggtctccatcgg 28 |||||||||||||||||| Sbjct: 12620448 caccacggtctccatcgg 12620465 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 197,383 Number of Sequences: 3902068 Number of extensions: 197383 Number of successful extensions: 48162 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48120 Number of HSP's gapped (non-prelim): 42 length of query: 56 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 36 effective length of database: 17,155,003,908 effective search space: 617580140688 effective search space used: 617580140688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)