ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRN... 100 6e-19
2emb|BX537347.12| Zebrafish DNA sequence from clone RP71-78P1 in ... 38 2.0
3gb|AY645032.1| Episyrphus balteatus hairy mRNA, partial cds 36 8.0
4gb|AY536581.1| Neurospora crassa phytase gene, partial cds 36 8.0
5ref|XM_957292.1| Neurospora crassa OR74A hypothetical protein (N... 36 8.0
6ref|XM_326205.1| Neurospora crassa OR74A hypothetical protein (N... 36 8.0
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 8.0
8gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome... 36 8.0
9ref|XM_808675.1| Trypanosoma cruzi strain CL Brener pantothenate... 36 8.0
10ref|XM_810446.1| Trypanosoma cruzi strain CL Brener pantothenate... 36 8.0
11gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosom... 36 8.0
12ref|XM_783396.1| PREDICTED: Strongylocentrotus purpuratus simila... 36 8.0
13gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 36 8.0
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 8.0

>gb|AY193714.1| Hordeum vulgare asparagine synthetase 2 (AS2) mRNA, complete cds
          Length = 1867

 Score = 99.6 bits (50), Expect = 6e-19
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                    
Query: 1    caacaccattcaccacggtctccatcggnccnggcttattgctaccacccacagcg 56
            |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1732 caacaccattcaccacggtctccatcggcccaggcttattgctaccacccacagcg 1677



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>emb|BX537347.12| Zebrafish DNA sequence from clone RP71-78P1 in linkage group 4,
             complete sequence
          Length = 197064

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 33    ggcttattgctaccacccacagc 55
             |||||||||||| ||||||||||
Sbjct: 20156 ggcttattgctaacacccacagc 20178



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>gb|AY645032.1| Episyrphus balteatus hairy mRNA, partial cds
          Length = 1527

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 8   attcaccacggtctccat 25
           ||||||||||||||||||
Sbjct: 908 attcaccacggtctccat 891



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>gb|AY536581.1| Neurospora crassa phytase gene, partial cds
          Length = 1591

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 1   caacaccattcaccacggtctc 22
           ||||||||| ||||||||||||
Sbjct: 576 caacaccatgcaccacggtctc 597



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>ref|XM_957292.1| Neurospora crassa OR74A hypothetical protein (NCU06351.1) partial
           mRNA
          Length = 1791

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 1   caacaccattcaccacggtctc 22
           ||||||||| ||||||||||||
Sbjct: 885 caacaccatgcaccacggtctc 906



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>ref|XM_326205.1| Neurospora crassa OR74A hypothetical protein (NCU06351.1) partial
           mRNA
          Length = 1791

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 1   caacaccattcaccacggtctc 22
           ||||||||| ||||||||||||
Sbjct: 885 caacaccatgcaccacggtctc 906



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 11       caccacggtctccatcgg 28
                ||||||||||||||||||
Sbjct: 12623685 caccacggtctccatcgg 12623702



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>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 39    ttgctaccacccacagcg 56
             ||||||||||||||||||
Sbjct: 94417 ttgctaccacccacagcg 94434



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>ref|XM_808675.1| Trypanosoma cruzi strain CL Brener pantothenate kinase subunit
            (Tc00.1047053511153.120) partial mRNA
          Length = 4443

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    cattcaccacggtctcca 24
            ||||||||||||||||||
Sbjct: 1744 cattcaccacggtctcca 1727



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>ref|XM_810446.1| Trypanosoma cruzi strain CL Brener pantothenate kinase subunit
            (Tc00.1047053506779.80) partial mRNA
          Length = 4443

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    cattcaccacggtctcca 24
            ||||||||||||||||||
Sbjct: 1744 cattcaccacggtctcca 1727



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>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete
             sequence
          Length = 176561

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 37    tattgctaccacccacag 54
             ||||||||||||||||||
Sbjct: 81606 tattgctaccacccacag 81589



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>ref|XM_783396.1| PREDICTED: Strongylocentrotus purpuratus similar to deleted in
            malignant brain tumors 1 isoform c precursor (LOC583490),
            mRNA
          Length = 2094

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 36   ttattgctaccacccaca 53
            ||||||||||||||||||
Sbjct: 1133 ttattgctaccacccaca 1116



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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    caccacggtctccatcgg 28
             ||||||||||||||||||
Sbjct: 53304 caccacggtctccatcgg 53287



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 8.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 11       caccacggtctccatcgg 28
                ||||||||||||||||||
Sbjct: 12620448 caccacggtctccatcgg 12620465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 197,383
Number of Sequences: 3902068
Number of extensions: 197383
Number of successful extensions: 48162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48120
Number of HSP's gapped (non-prelim): 42
length of query: 56
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 36
effective length of database: 17,155,003,908
effective search space: 617580140688
effective search space used: 617580140688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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