| Clone Name | rbags21c17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193885.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 210 bits (106), Expect = 4e-51 Identities = 304/370 (82%) Strand = Plus / Minus Query: 266 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 325 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 1145 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 1086 Query: 326 tgctttgcacgatccatgtggctcctgagcgcgctcgccggcagaggaattccacggttt 385 ||||| |||||||||| ||||||| ||||||||||| | | ||| |||||||||| Sbjct: 1085 tgcttagcacgatccaggtggctcttgagcgcgctcattgctacagggtttccacggttc 1026 Query: 386 tccaccggaaatcccgtcgagagcgggccctggtgatcggagatcttgacgggcaccagg 445 || | ||||| || || || || || ||||| ||||| ||||||||||| ||||||||| Sbjct: 1025 tcgataggaaagccggttgaaagtggaccctgatgatcagagatcttgacaggcaccagg 966 Query: 446 aagaagtcattgtccacctccatggtgtccttcccccctgcaatcacctccttgcgcatc 505 ||||||||||||||||||||||| || ||||| ||||| || | |||||| || |||||| Sbjct: 965 aagaagtcattgtccacctccatagtatcctttcccccagccaccacctctttccgcatc 906 Query: 506 ttggacaggcgggggtcgtcggagtccttgacctccgtctccagcacgccgtccttgaac 565 |||||||||||||| ||||| |||| | ||||||||||||||| || ||||||||| Sbjct: 905 ttggacaggcggggatcgtctttgtccccaatctccgtctccagcacaccatccttgaac 846 Query: 566 agcttgacgcagacctcgctcatctggaaggcctcgaagtgcacgtcggccgagccgtct 625 ||||| || || | ||| ||||||||||| |||||||||||||| || | ||||| || Sbjct: 845 agcttcacacaaatctcactcatctggaacgcctcgaagtgcacatcaccggagccatca 786 Query: 626 tcccccacct 635 |||||||||| Sbjct: 785 tcccccacct 776
>dbj|AK059266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B02, full insert sequence Length = 1478 Score = 202 bits (102), Expect = 1e-48 Identities = 303/370 (81%) Strand = Plus / Minus Query: 266 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 325 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 1188 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 1129 Query: 326 tgctttgcacgatccatgtggctcctgagcgcgctcgccggcagaggaattccacggttt 385 ||||| |||||||||| ||||||| ||||||||||| | | ||| |||||||||| Sbjct: 1128 tgcttagcacgatccaggtggctcttgagcgcgctcattgctacagggtttccacggttc 1069 Query: 386 tccaccggaaatcccgtcgagagcgggccctggtgatcggagatcttgacgggcaccagg 445 || | ||||| || || || || || ||||| ||||| ||||||||||| ||||||||| Sbjct: 1068 tcgataggaaagccggttgaaagtggaccctgatgatcagagatcttgacaggcaccagg 1009 Query: 446 aagaagtcattgtccacctccatggtgtccttcccccctgcaatcacctccttgcgcatc 505 ||||||||||||||||||||||| || ||||| ||||| || | |||| | || |||||| Sbjct: 1008 aagaagtcattgtccacctccatagtatcctttcccccagccaccacccctttccgcatc 949 Query: 506 ttggacaggcgggggtcgtcggagtccttgacctccgtctccagcacgccgtccttgaac 565 |||||||||||||| ||||| |||| | ||||||||||||||| || ||||||||| Sbjct: 948 ttggacaggcggggatcgtctttgtccccaatctccgtctccagcacaccatccttgaac 889 Query: 566 agcttgacgcagacctcgctcatctggaaggcctcgaagtgcacgtcggccgagccgtct 625 ||||| || || | ||| ||||||||||| |||||||||||||| || | ||||| || Sbjct: 888 agcttcacacaaatctcactcatctggaacgcctcgaagtgcacatcaccggagccatca 829 Query: 626 tcccccacct 635 |||||||||| Sbjct: 828 tcccccacct 819
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 178 bits (90), Expect = 1e-41 Identities = 189/222 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct: 15627988 cctgatgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 15627929 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 15627928 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 15627869 Query: 534 tgacctccgtctccagcacgccgtccttgaacagcttgacgcagacctcgctcatctgga 593 | ||||||||||||||| || |||||||||||||| || || | ||| |||||||||| Sbjct: 15627868 caatctccgtctccagcacaccatccttgaacagcttcacacaaatctcactcatctgga 15627809 Query: 594 aggcctcgaagtgcacgtcggccgagccgtcttcccccacct 635 | |||||||||||||| || | ||||| || |||||||||| Sbjct: 15627808 acgcctcgaagtgcacatcaccggagccatcatcccccacct 15627767 Score = 137 bits (69), Expect = 5e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct: 42465667 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 42465608 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 42465607 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 42465548 Query: 534 tgacctccgtctccagcacgccgtccttgaacagctt 570 | | || ||||| |||||| || |||||||| ||||| Sbjct: 42465547 taatcttcgtctgcagcacaccatccttgaatagctt 42465511 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 266 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 325 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 15631081 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 15631022 Query: 326 tgctttgcacgatccatgtggctcctgagcgcgctc 361 ||||| |||||||||| ||||||| ||||||||||| Sbjct: 15631021 tgcttagcacgatccaggtggctcttgagcgcgctc 15630986
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 178 bits (90), Expect = 1e-41 Identities = 189/222 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct: 65885 cctgatgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 65826 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 65825 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 65766 Query: 534 tgacctccgtctccagcacgccgtccttgaacagcttgacgcagacctcgctcatctgga 593 | ||||||||||||||| || |||||||||||||| || || | ||| |||||||||| Sbjct: 65765 caatctccgtctccagcacaccatccttgaacagcttcacacaaatctcactcatctgga 65706 Query: 594 aggcctcgaagtgcacgtcggccgagccgtcttcccccacct 635 | |||||||||||||| || | ||||| || |||||||||| Sbjct: 65705 acgcctcgaagtgcacatcaccggagccatcatcccccacct 65664 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 266 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 325 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 68978 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 68919 Query: 326 tgctttgcacgatccatgtggctcctgagcgcgctc 361 ||||| |||||||||| ||||||| ||||||||||| Sbjct: 68918 tgcttagcacgatccaggtggctcttgagcgcgctc 68883
>dbj|AK107503.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E03, full insert sequence Length = 2089 Score = 178 bits (90), Expect = 1e-41 Identities = 189/222 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct: 1036 cctgatgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 977 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 976 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 917 Query: 534 tgacctccgtctccagcacgccgtccttgaacagcttgacgcagacctcgctcatctgga 593 | ||||||||||||||| || |||||||||||||| || || | ||| |||||||||| Sbjct: 916 caatctccgtctccagcacaccatccttgaacagcttcacacaaatctcactcatctgga 857 Query: 594 aggcctcgaagtgcacgtcggccgagccgtcttcccccacct 635 | |||||||||||||| || | ||||| || |||||||||| Sbjct: 856 acgcctcgaagtgcacatcaccggagccatcatcccccacct 815
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483G10 Length = 190721 Score = 137 bits (69), Expect = 5e-29 Identities = 135/157 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct: 125005 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtat 124946 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 124945 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 124886 Query: 534 tgacctccgtctccagcacgccgtccttgaacagctt 570 | | || ||||| |||||| || |||||||| ||||| Sbjct: 124885 taatcttcgtctgcagcacaccatccttgaatagctt 124849
>ref|NM_189382.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 133 bits (67), Expect = 8e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 415 ctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgtc 474 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || || Sbjct: 963 ctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagtatc 904 Query: 475 cttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtc 525 ||| ||||| || | |||||| || |||||||||||||||||||| ||||| Sbjct: 903 ctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtc 853
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct: 6250274 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcat 6250215 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 6250214 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 6250155 Query: 534 tgacctccgtctccagcacgccgtccttgaacagctt 570 | | || ||||| |||||| || |||||||| ||||| Sbjct: 6250154 taatcttcgtctgcagcacaccatccttgaatagctt 6250118
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct: 36411 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcat 36352 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 36351 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 36292 Query: 534 tgacctccgtctccagcacgccgtccttgaacagctt 570 | | || ||||| |||||| || |||||||| ||||| Sbjct: 36291 taatcttcgtctgcagcacaccatccttgaatagctt 36255
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Minus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgt 473 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | | Sbjct: 113667 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcat 113608 Query: 474 ccttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtcggagtcct 533 |||| ||||| || | |||||| || |||||||||||||||||||| ||||| |||| Sbjct: 113607 cctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtctttgtccc 113548 Query: 534 tgacctccgtctccagcacgccgtccttgaacagctt 570 | | || ||||| |||||| || |||||||| ||||| Sbjct: 113547 taatcttcgtctgcagcacaccatccttgaatagctt 113511
>ref|XM_480621.1| Oryza sativa (japonica cultivar-group), mRNA Length = 537 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 415 ctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatggtgtc 474 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | || Sbjct: 528 ctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatagcatc 469 Query: 475 cttcccccctgcaatcacctccttgcgcatcttggacaggcgggggtcgtc 525 ||| ||||| || | |||||| || |||||||||||||||||||| ||||| Sbjct: 468 ctttcccccagccaccacctctttccgcatcttggacaggcggggatcgtc 418
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Plus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 470 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 19698724 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 19698780
>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0048D08 Length = 145772 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Plus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 470 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 30730 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 30786
>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041J06 Length = 138157 Score = 97.6 bits (49), Expect = 4e-17 Identities = 55/57 (96%) Strand = Plus / Plus Query: 414 cctggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 470 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 137374 cctggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 137430
>emb|AL022575.1|HS159A15 Human DNA sequence from clone RP1-159A15 on chromosome X Contains the 3' end of a novel gene, complete sequence Length = 71934 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 tccattggtttatgtttgacc 170 ||||||||||||||||||||| Sbjct: 42126 tccattggtttatgtttgacc 42106
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 caccaggaagaagtcattgtc 459 ||||||||||||||||||||| Sbjct: 175061 caccaggaagaagtcattgtc 175081
>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence Length = 205150 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 ctctccattggtttatgtttgacct 171 |||||||||||||||||||| |||| Sbjct: 38714 ctctccattggtttatgttttacct 38690
>gb|CP000224.1| Drosophila melanogaster genomic scaffold 211000022280794 Length = 474727 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 caggaaagcagcgatctggag 285 ||||||||||||||||||||| Sbjct: 295135 caggaaagcagcgatctggag 295155
>gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, complete sequence Length = 170006 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ctctccattggtttatgttt 166 |||||||||||||||||||| Sbjct: 152564 ctctccattggtttatgttt 152545
>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence Length = 218640 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 agacattcatataaattaca 90 |||||||||||||||||||| Sbjct: 17866 agacattcatataaattaca 17885
>gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, complete sequence Length = 191190 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 catataaattacacatgaga 97 |||||||||||||||||||| Sbjct: 72888 catataaattacacatgaga 72869
>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence Length = 143546 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 agacattcatataaattaca 90 |||||||||||||||||||| Sbjct: 101632 agacattcatataaattaca 101613
>gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, complete sequence Length = 146781 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 ctctccattggtttatgttt 166 |||||||||||||||||||| Sbjct: 77129 ctctccattggtttatgttt 77148
>gb|AF443118.1|AF443118 Gossypium hirsutum polyphosphoinositide binding protein (Ssh2) mRNA, complete cds Length = 955 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 gtgatcggagatcttgacgg 437 |||||||||||||||||||| Sbjct: 476 gtgatcggagatcttgacgg 495
>gb|AC004971.3| Homo sapiens PAC clone RP5-1125K23 from 7, complete sequence Length = 123253 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 tgtttgacctgccaaggcgtcgatgagg 189 |||||||||||||||||| || |||||| Sbjct: 109064 tgtttgacctgccaaggcttccatgagg 109091
>dbj|AB052134.1| Macaca fascicularis brain cDNA, clone:QccE-18183, similar to human histone deacetylase 1(HDAC11), mRNA, NM_024827.1 Length = 3160 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 caggtggaaatcagagatgc 308 |||||||||||||||||||| Sbjct: 2308 caggtggaaatcagagatgc 2327
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cctgagacattcatataaattaca 90 |||||||| ||||||||||||||| Sbjct: 17012 cctgagactttcatataaattaca 16989
>gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, complete sequence Length = 205962 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 catataaattacacatgaga 97 |||||||||||||||||||| Sbjct: 49124 catataaattacacatgaga 49105 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,765,251 Number of Sequences: 3902068 Number of extensions: 4765251 Number of successful extensions: 86129 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85976 Number of HSP's gapped (non-prelim): 153 length of query: 635 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 612 effective length of database: 17,143,297,704 effective search space: 10491698194848 effective search space used: 10491698194848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)