ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VNUC_MABVP (P35263) Nucleoprotein (Nucleocapsid protein) 28 7.8
2VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein) 28 7.8

>VNUC_MABVP (P35263) Nucleoprotein (Nucleocapsid protein)|
          Length = 695

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 22  IAQVLSTERLIHKYHKTKDEITHKRT*YEPSQILLTLHYIRAKISNIISDLESS 183
           IA+     +++ ++H  K EITH       SQ L  L   R K++ + +++E++
Sbjct: 348 IAEDDEERKILEQFHLQKTEITH-------SQTLAVLSQKREKLARLAAEIENN 394



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>VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein)|
          Length = 692

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 22  IAQVLSTERLIHKYHKTKDEITHKRT*YEPSQILLTLHYIRAKISNIISDLESS 183
           IA+     +++ ++H  K EITH       SQ L  L   R K++ + +++E++
Sbjct: 348 IAEDDEERKILEQFHLQKTEITH-------SQTLAVLSQKREKLARLAAEIENN 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,925,186
Number of Sequences: 219361
Number of extensions: 583723
Number of successful extensions: 982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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