Clone Information

BLAST Search Result

Clone Name	rbags20n09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK069115.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	254	3e-64
2	dbj\|AK111684.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	240	5e-60
3	ref\|XM_478073.1\| Oryza sativa (japonica cultivar-group), mRNA	129	1e-26
4	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
5	dbj\|AP005181.4\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
6	dbj\|AP004315.3\| Oryza sativa (japonica cultivar-group) genomic D...	127	5e-26
7	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
8	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	92	3e-15
9	emb\|AL713951.4\|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111...	92	3e-15
10	gb\|AY574038.1\| Gossypium hirsutum cyclopropane fatty acid syntha...	52	0.002
11	ref\|NM_113256.3\| Arabidopsis thaliana cyclopropane-fatty-acyl-ph...	50	0.009
12	gb\|BT000811.1\| Arabidopsis thaliana At3g23520 mRNA sequence	50	0.009
13	gb\|AY065013.1\| Arabidopsis thaliana AT3g23510/MEE5_5 mRNA, compl...	50	0.009
14	gb\|AY064962.1\| Arabidopsis thaliana AT3g23510/MEE5_5 mRNA, compl...	50	0.009
15	gb\|BT006344.1\| Arabidopsis thaliana At3g23510/MEE5_5 gene, compl...	50	0.009
16	dbj\|AK176391.1\| Arabidopsis thaliana mRNA, complete cds, clone: ...	50	0.009
17	gb\|BT001134.1\| Arabidopsis thaliana At3g23510/MEE5_5 mRNA, compl...	50	0.009
18	gb\|AC131036.4\| Mus musculus chromosome 5, clone RP23-358D12, com...	44	0.58
19	gb\|AC163275.4\| Mus musculus chromosome 5, clone RP23-458G12, com...	44	0.58
20	dbj\|AK083447.1\| Mus musculus 9 days embryo whole body cDNA, RIKE...	44	0.58
21	gb\|AY342401.1\| Homo sapiens vitamin D (1,25-dihydroxyvitamin D3)...	42	2.3
22	gb\|AC004466.1\| Homo sapiens 12 PAC RPCI5-1057I20 (Roswell Park C...	42	2.3
23	gb\|AE000789.1\| Borrelia burgdorferi B31 plasmid lp28-4, complete...	42	2.3
24	gb\|AC134346.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
25	gb\|AC136227.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.1
26	emb\|AL139137.15\| Human DNA sequence from clone RP11-58O13 on chr...	40	9.1
27	gb\|AC092931.8\| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Canc...	40	9.1
28	emb\|AL050322.13\|HSJ727I10 Human DNA sequence from clone RP4-727I...	40	9.1
29	emb\|AL604046.8\| Mouse DNA sequence from clone RP23-206D6 on chro...	40	9.1
30	emb\|AL831789.6\| Zebrafish DNA sequence from clone CH211-207O21 i...	40	9.1
31	gb\|AC093795.3\| Homo sapiens BAC clone RP11-299P3 from 4, complet...	40	9.1
32	gb\|AC093246.3\| Homo sapiens chromosome 5 clone RP11-117L6, compl...	40	9.1
33	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
34	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
35	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
36	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
37	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
38	gb\|AC003036.1\|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswel...	40	9.1
39	ref\|NM_001007158.1\| Danio rerio polycomb group ring finger 1 (pc...	40	9.1
40	gb\|AC084674.1\|CBRG47I21 Caenorhabditis briggsae cosmid G47I21, c...	40	9.1
41	dbj\|AP005491.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
42	dbj\|AP005250.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
43	dbj\|AP005907.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
44	dbj\|AP005630.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
45	dbj\|BS000242.1\| Pan troglodytes chromosome 22 clone:PTB-120M01, ...	40	9.1
46	dbj\|AP004553.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1

>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full
            insert sequence
          Length = 2846

 Score =  254 bits (128), Expect = 3e-64
 Identities = 329/396 (83%)
 Strand = Plus / Minus

                                                                        
Query: 267  aatacaatctggtaagttccaagcgtccgtgacttgaaaccggccgcgcagtatatgaaa 326
            ||||||||||||||   |||||| ||||  || || |||||||| |||||||||||||||
Sbjct: 2629 aatacaatctggtagtctccaagtgtcctggatttaaaaccggctgcgcagtatatgaaa 2570

                                                                        
Query: 327  taatactcccatacacgaatgaacttgtcgtcaaatcccagagccaaaattgcatctttg 386
            || |||||||||  |||||||||||| || ||||| ||||| |||||||||  |||||| 
Sbjct: 2569 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattttatcttta 2510

                                                                        
Query: 387  ttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccgatgttc 446
            |||||||| ||||| ||||||||||||||||| || |  || |||||||| || || |||
Sbjct: 2509 ttggccatgaagttgtccctccagcgtatcagagttgtataataatggtacccaatattc 2450

                                                                        
Query: 447  tcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgggccaag 506
            ||||| ||||| |||||||||||||| ||||| ||||||||||| || ||||| | ||  
Sbjct: 2449 tcaacgtgctcaatgcagagccttgatgcagcagacatggcagatgttatccgagtcaga 2390

                                                                        
Query: 507  gaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaacttctcctgtat 566
            ||||||||||| || || || || |||||||| || || |||||||| ||||||| ||| 
Sbjct: 2389 gaaggaaggcatccaccagggaatatgtattctttaataaagtctgagcttctccggtac 2330

                                                                        
Query: 567  tcctcataccgttcttctggaatcgatataaactggaggacaaatagaccatctggagcc 626
            || ||||||||||| || ||||| || |||||||||  ||||||||  |||| |  ||||
Sbjct: 2329 tcatcataccgttcctccggaattgagataaactgggtgacaaatatgccattttcagcc 2270

                                                
Query: 627  aatagggactcgcaacaaccaaagaaatcatccatg 662
            || |||||||| || || |||||||| |||||||||
Sbjct: 2269 aaaagggactcacagcagccaaagaattcatccatg 2234

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>dbj|AK111684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169K10, full
            insert sequence
          Length = 1367

 Score =  240 bits (121), Expect = 5e-60
 Identities = 346/421 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  cagcttgtcattgccaggtcgcgaaaatacaatctggtaagttccaagcgtccgtgactt 301
            ||||||||| |||||||| || || || |||||||||||  ||||||| || ||||||||
Sbjct: 1129 cagcttgtcgttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgactt 1070

                                                                        
Query: 302  gaaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaa 361
            ||| || || ||||||||||||||||| ||||||||||  || ||||||||||| || ||
Sbjct: 1069 gaacccagctgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaa 1010

                                                                        
Query: 362  tcccagagccaaaattgcatctttgttggccataaagttatccctccagcgtatcagcgt 421
            |||||| | |   ||  | ||| |||| ||||| ||||| |||| |||||||||||||||
Sbjct: 1009 tcccagggactttatctcttctctgttagccatgaagttgtcccgccagcgtatcagcgt 950

                                                                        
Query: 422  cgggtagtaatggtatccgatgttctcaacctgctcgatgcagagccttgacgcagcgga 481
             |||||||| ||||| || || ||||| |  ||||||||||| ||||| ||||  | |||
Sbjct: 949  ggggtagtagtggtacccaatattctccaagtgctcgatgcatagcctcgacgaggtgga 890

                                                                        
Query: 482  catggcagacgtgatccgggccaaggaaggaaggcaaccccctggaaagatgtattcctt 541
            |||||| || || ||||| | |||||| |||||||||||||| ||||| |||||||||||
Sbjct: 889  catggcggatgttatccgagacaaggatggaaggcaacccccaggaaatatgtattcctt 830

                                                                        
Query: 542  tatgaagtctgaacttctcctgtattcctcataccgttcttctggaatcgatataaactg 601
             |||||||||||||| | ||||||||| || ||||||||||| || || || || |||||
Sbjct: 829  gatgaagtctgaactccccctgtattcttcgtaccgttcttcagggatggagatgaactg 770

                                                                        
Query: 602  gaggacaaatagaccatctggagccaatagggactcgcaacaaccaaagaaatcatccat 661
            |||||| || || |||||  | ||||  || |||||||| || || |||||||| |||||
Sbjct: 769  gaggacgaacaggccatcctgtgccaggagagactcgcagcagccgaagaaatcgtccat 710

             
Query: 662  g 662
            |
Sbjct: 709  g 709

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>ref|XM_478073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2397

 Score =  129 bits (65), Expect = 1e-26
 Identities = 182/221 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  cagcttgtcattgccaggtcgcgaaaatacaatctggtaagttccaagcgtccgtgactt 301
            ||||||||| |||||||| || || || |||||||||||  ||||||| || ||||||||
Sbjct: 2352 cagcttgtcgttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgactt 2293

                                                                        
Query: 302  gaaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaa 361
            ||| || || ||||||||||||||||| ||||||||||  || ||||||||||| || ||
Sbjct: 2292 gaacccagctgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaa 2233

                                                                        
Query: 362  tcccagagccaaaattgcatctttgttggccataaagttatccctccagcgtatcagcgt 421
            |||||| | |   ||  | ||| |||| ||||| ||||| |||| |||||||||||||||
Sbjct: 2232 tcccagggactttatctcttctctgttagccatgaagttgtcccgccagcgtatcagcgt 2173

                                                     
Query: 422  cgggtagtaatggtatccgatgttctcaacctgctcgatgc 462
             |||||||| ||||| || || ||||| |  ||||||||||
Sbjct: 2172 ggggtagtagtggtacccaatattctccaagtgctcgatgc 2132

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  127 bits (64), Expect = 5e-26
 Identities = 154/184 (83%)
 Strand = Plus / Minus

                                                                            
Query: 479      ggacatggcagacgtgatccgggccaaggaaggaaggcaaccccctggaaagatgtattc 538
                ||||||||| || || ||||| | |||||| |||||||||||||| ||||| ||||||||
Sbjct: 17064961 ggacatggcggatgttatccgagacaaggatggaaggcaacccccaggaaatatgtattc 17064902

                                                                            
Query: 539      ctttatgaagtctgaacttctcctgtattcctcataccgttcttctggaatcgatataaa 598
                ||| |||||||||||||| ||||||||||| || ||||||||||| || || || || ||
Sbjct: 17064901 cttgatgaagtctgaactcctcctgtattcttcgtaccgttcttcagggatggagatgaa 17064842

                                                                            
Query: 599      ctggaggacaaatagaccatctggagccaatagggactcgcaacaaccaaagaaatcatc 658
                ||||||||| || || |||||  | ||||  || |||||||| || || |||||||| ||
Sbjct: 17064841 ctggaggacgaacaggccatcctgtgccaggagagactcgcagcagccgaagaaatcgtc 17064782

                    
Query: 659      catg 662
                ||||
Sbjct: 17064781 catg 17064778



 Score =  107 bits (54), Expect = 5e-20
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                            
Query: 242      cagcttgtcattgccaggtcgcgaaaatacaatctggtaagttccaagcgtccgtgactt 301
                ||||||||| |||||||| || || || |||||||||||  ||||||| || ||||||||
Sbjct: 17066597 cagcttgtcgttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgactt 17066538

                                                                            
Query: 302      gaaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaa 361
                ||| || || ||||||||||||||||| ||||||||||  || ||||||||||| || ||
Sbjct: 17066537 gaacccagctgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaa 17066478

                      
Query: 362      tcccag 367
                ||||||
Sbjct: 17066477 tcccag 17066472



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                            
Query: 385      tgttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccgatgt 444
                |||| ||||| ||||| |||| ||||||||||||||| |||||||| ||||| || || |
Sbjct: 17066276 tgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtagtggtacccaatat 17066217

                                  
Query: 445      tctcaacctgctcgatgc 462
                |||| |  ||||||||||
Sbjct: 17066216 tctccaagtgctcgatgc 17066199

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>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0016H06
          Length = 148158

 Score =  127 bits (64), Expect = 5e-26
 Identities = 154/184 (83%)
 Strand = Plus / Minus

                                                                          
Query: 479    ggacatggcagacgtgatccgggccaaggaaggaaggcaaccccctggaaagatgtattc 538
              ||||||||| || || ||||| | |||||| |||||||||||||| ||||| ||||||||
Sbjct: 144372 ggacatggcggatgttatccgagacaaggatggaaggcaacccccaggaaatatgtattc 144313

                                                                          
Query: 539    ctttatgaagtctgaacttctcctgtattcctcataccgttcttctggaatcgatataaa 598
              ||| |||||||||||||| ||||||||||| || ||||||||||| || || || || ||
Sbjct: 144312 cttgatgaagtctgaactcctcctgtattcttcgtaccgttcttcagggatggagatgaa 144253

                                                                          
Query: 599    ctggaggacaaatagaccatctggagccaatagggactcgcaacaaccaaagaaatcatc 658
              ||||||||| || || |||||  | ||||  || |||||||| || || |||||||| ||
Sbjct: 144252 ctggaggacgaacaggccatcctgtgccaggagagactcgcagcagccgaagaaatcgtc 144193

                  
Query: 659    catg 662
              ||||
Sbjct: 144192 catg 144189



 Score =  107 bits (54), Expect = 5e-20
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                          
Query: 242    cagcttgtcattgccaggtcgcgaaaatacaatctggtaagttccaagcgtccgtgactt 301
              ||||||||| |||||||| || || || |||||||||||  ||||||| || ||||||||
Sbjct: 146008 cagcttgtcgttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgactt 145949

                                                                          
Query: 302    gaaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaa 361
              ||| || || ||||||||||||||||| ||||||||||  || ||||||||||| || ||
Sbjct: 145948 gaacccagctgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaa 145889

                    
Query: 362    tcccag 367
              ||||||
Sbjct: 145888 tcccag 145883



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                          
Query: 385    tgttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccgatgt 444
              |||| ||||| ||||| |||| ||||||||||||||| |||||||| ||||| || || |
Sbjct: 145687 tgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtagtggtacccaatat 145628

                                
Query: 445    tctcaacctgctcgatgc 462
              |||| |  ||||||||||
Sbjct: 145627 tctccaagtgctcgatgc 145610

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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score =  127 bits (64), Expect = 5e-26
 Identities = 154/184 (83%)
 Strand = Plus / Minus

                                                                         
Query: 479   ggacatggcagacgtgatccgggccaaggaaggaaggcaaccccctggaaagatgtattc 538
             ||||||||| || || ||||| | |||||| |||||||||||||| ||||| ||||||||
Sbjct: 18087 ggacatggcggatgttatccgagacaaggatggaaggcaacccccaggaaatatgtattc 18028

                                                                         
Query: 539   ctttatgaagtctgaacttctcctgtattcctcataccgttcttctggaatcgatataaa 598
             ||| |||||||||||||| ||||||||||| || ||||||||||| || || || || ||
Sbjct: 18027 cttgatgaagtctgaactcctcctgtattcttcgtaccgttcttcagggatggagatgaa 17968

                                                                         
Query: 599   ctggaggacaaatagaccatctggagccaatagggactcgcaacaaccaaagaaatcatc 658
             ||||||||| || || |||||  | ||||  || |||||||| || || |||||||| ||
Sbjct: 17967 ctggaggacgaacaggccatcctgtgccaggagagactcgcagcagccgaagaaatcgtc 17908

                 
Query: 659   catg 662
             ||||
Sbjct: 17907 catg 17904



 Score =  107 bits (54), Expect = 5e-20
 Identities = 108/126 (85%)
 Strand = Plus / Minus

                                                                         
Query: 242   cagcttgtcattgccaggtcgcgaaaatacaatctggtaagttccaagcgtccgtgactt 301
             ||||||||| |||||||| || || || |||||||||||  ||||||| || ||||||||
Sbjct: 19723 cagcttgtcgttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgactt 19664

                                                                         
Query: 302   gaaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaa 361
             ||| || || ||||||||||||||||| ||||||||||  || ||||||||||| || ||
Sbjct: 19663 gaacccagctgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaa 19604

                   
Query: 362   tcccag 367
             ||||||
Sbjct: 19603 tcccag 19598



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 385   tgttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccgatgt 444
             |||| ||||| ||||| |||| ||||||||||||||| |||||||| ||||| || || |
Sbjct: 19402 tgttagccatgaagttgtcccgccagcgtatcagcgtggggtagtagtggtacccaatat 19343

                               
Query: 445   tctcaacctgctcgatgc 462
             |||| |  ||||||||||
Sbjct: 19342 tctccaagtgctcgatgc 19325

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                           
Query: 462     cagagccttgacgcagcggacatggcagacgtgatccgggccaaggaaggaaggcaaccc 521
               ||||||||||| ||||| ||||||||||| || ||||| | ||  ||||||||||| || 
Sbjct: 9538811 cagagccttgatgcagcagacatggcagatgttatccgagtcagagaaggaaggcatcca 9538752

                                                                           
Query: 522     cctggaaagatgtattcctttatgaagtctgaacttctcctgtattcctcataccgttct 581
               || || || |||||||| || || |||||||| ||||||| ||| || ||||||||||| 
Sbjct: 9538751 ccagggaatatgtattctttaataaagtctgagcttctccggtactcatcataccgttcc 9538692

                                     
Query: 582     tctggaatcgatataaactgga 603
               || ||||| || ||||||||||
Sbjct: 9538691 tccggaattgagataaactgga 9538670



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                           
Query: 303     aaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaat 362
               |||||||| ||||||||||||||||| |||||||||  |||||||||||| || ||||| 
Sbjct: 9539479 aaaccggctgcgcagtatatgaaatagtactcccatgtacgaatgaacttctcatcaaag 9539420

                              
Query: 363     cccagagccaaaatt 377
               ||||| |||||||||
Sbjct: 9539419 cccagggccaaaatt 9539405



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                           
Query: 381     tctttgttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccg 440
               ||||| |||||||| ||||| ||||||||||||||||| || |  || |||||||| || 
Sbjct: 9538995 tctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtaccca 9538936

                                     
Query: 441     atgttctcaacctgctcgatgc 462
               || |||||||| ||||| ||||
Sbjct: 9538935 atattctcaacgtgctcaatgc 9538914

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                           
Query: 462     cagagccttgacgcagcggacatggcagacgtgatccgggccaaggaaggaaggcaaccc 521
               ||||||||||| ||||| ||||||||||| || ||||| | ||  ||||||||||| || 
Sbjct: 9538696 cagagccttgatgcagcagacatggcagatgttatccgagtcagagaaggaaggcatcca 9538637

                                                                           
Query: 522     cctggaaagatgtattcctttatgaagtctgaacttctcctgtattcctcataccgttct 581
               || || || |||||||| || || |||||||| ||||||| ||| || ||||||||||| 
Sbjct: 9538636 ccagggaatatgtattctttaataaagtctgagcttctccggtactcatcataccgttcc 9538577

                                     
Query: 582     tctggaatcgatataaactgga 603
               || ||||| || ||||||||||
Sbjct: 9538576 tccggaattgagataaactgga 9538555



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                           
Query: 303     aaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaat 362
               |||||||| ||||||||||||||||| |||||||||  |||||||||||| || ||||| 
Sbjct: 9539364 aaaccggctgcgcagtatatgaaatagtactcccatgtacgaatgaacttctcatcaaag 9539305

                              
Query: 363     cccagagccaaaatt 377
               ||||| |||||||||
Sbjct: 9539304 cccagggccaaaatt 9539290



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                           
Query: 381     tctttgttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccg 440
               ||||| |||||||| ||||| ||||||||||||||||| || |  || |||||||| || 
Sbjct: 9538880 tctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtaccca 9538821

                                     
Query: 441     atgttctcaacctgctcgatgc 462
               || |||||||| ||||| ||||
Sbjct: 9538820 atattctcaacgtgctcaatgc 9538799

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>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 165137

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 462  cagagccttgacgcagcggacatggcagacgtgatccgggccaaggaaggaaggcaaccc 521
            ||||||||||| ||||| ||||||||||| || ||||| | ||  ||||||||||| || 
Sbjct: 2122 cagagccttgatgcagcagacatggcagatgttatccgagtcagagaaggaaggcatcca 2063

                                                                        
Query: 522  cctggaaagatgtattcctttatgaagtctgaacttctcctgtattcctcataccgttct 581
            || || || |||||||| || || |||||||| ||||||| ||| || ||||||||||| 
Sbjct: 2062 ccagggaatatgtattctttaataaagtctgagcttctccggtactcatcataccgttcc 2003

                                  
Query: 582  tctggaatcgatataaactgga 603
            || ||||| || ||||||||||
Sbjct: 2002 tccggaattgagataaactgga 1981



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                        
Query: 303  aaaccggccgcgcagtatatgaaataatactcccatacacgaatgaacttgtcgtcaaat 362
            |||||||| ||||||||||||||||| |||||||||  |||||||||||| || ||||| 
Sbjct: 2790 aaaccggctgcgcagtatatgaaatagtactcccatgtacgaatgaacttctcatcaaag 2731

                           
Query: 363  cccagagccaaaatt 377
            ||||| |||||||||
Sbjct: 2730 cccagggccaaaatt 2716



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                        
Query: 381  tctttgttggccataaagttatccctccagcgtatcagcgtcgggtagtaatggtatccg 440
            ||||| |||||||| ||||| ||||||||||||||||| || |  || |||||||| || 
Sbjct: 2306 tctttattggccatgaagttgtccctccagcgtatcagagttgtataataatggtaccca 2247

                                  
Query: 441  atgttctcaacctgctcgatgc 462
            || |||||||| ||||| ||||
Sbjct: 2246 atattctcaacgtgctcaatgc 2225

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>gb|AY574038.1| Gossypium hirsutum cyclopropane fatty acid synthase (CPA-FAS-3) mRNA,
            complete cds
          Length = 2912

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 528  aagatgtattcctttatgaagtctgaacttctcctgtattcctcataccgttcttctgga 587
            |||||||||||||| ||||| || || |||| ||||||||| |  |||||||| ||||| 
Sbjct: 2381 aagatgtattccttgatgaaatccgagcttcgcctgtattcattgtaccgttcctctggt 2322

                          
Query: 588  atcgatataaactg 601
            || ||||| |||||
Sbjct: 2321 attgatatgaactg 2308

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>ref|NM_113256.3| Arabidopsis thaliana cyclopropane-fatty-acyl-phospholipid synthase/
            oxidoreductase AT3G23530 mRNA, complete cds
          Length = 3148

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2681 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2622

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2621 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2565

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>gb|BT000811.1| Arabidopsis thaliana At3g23520 mRNA sequence
          Length = 3084

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2655 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2596

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2595 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2539

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>gb|AY065013.1| Arabidopsis thaliana AT3g23510/MEE5_5 mRNA, complete cds
          Length = 3149

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2681 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2622

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2621 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2565

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>gb|AY064962.1| Arabidopsis thaliana AT3g23510/MEE5_5 mRNA, complete cds
          Length = 2988

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2600 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2541

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2540 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2484

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>gb|BT006344.1| Arabidopsis thaliana At3g23510/MEE5_5 gene, complete cds
          Length = 2604

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2357 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2298

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2297 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2241

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>dbj|AK176391.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL24-10-D10
          Length = 2986

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2589 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2530

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2529 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2473

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>gb|BT001134.1| Arabidopsis thaliana At3g23510/MEE5_5 mRNA, complete cds
          Length = 2604

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 94/117 (80%)
 Strand = Plus / Minus

                                                                        
Query: 441  atgttctcaacctgctcgatgcagagccttgacgcagcggacatggcagacgtgatccgg 500
            ||||||||||| || |||||||| ||||| || | || ||||||||| |  ||||  | |
Sbjct: 2357 atgttctcaacatgttcgatgcatagcctagaagaagaggacatggctgtagtgactctg 2298

                                                                     
Query: 501  gccaaggaaggaaggcaaccccctggaaagatgtattcctttatgaagtctgaactt 557
            || || ||||||||||| || || || || |||||||| || ||||| |||||||||
Sbjct: 2297 gctaaagaaggaaggcatccaccagggaatatgtattctttaatgaaatctgaactt 2241

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>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence
          Length = 197112

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 140   gcatgctattatatgtaggtat 161
             ||||||||||||||||||||||
Sbjct: 46074 gcatgctattatatgtaggtat 46095

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>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence
          Length = 176643

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 140   gcatgctattatatgtaggtat 161
             ||||||||||||||||||||||
Sbjct: 91048 gcatgctattatatgtaggtat 91069

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>dbj|AK083447.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030016M01
            product:unclassifiable, full insert sequence
          Length = 2177

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 140  gcatgctattatatgtaggtat 161
            ||||||||||||||||||||||
Sbjct: 1829 gcatgctattatatgtaggtat 1850

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>gb|AY342401.1| Homo sapiens vitamin D (1,25-dihydroxyvitamin D3) receptor (VDR) gene,
             complete cds
          Length = 67076

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 494   gatccgggccaaggaaggaaggcaacccc 522
             |||| ||||||||| ||||||||||||||
Sbjct: 49623 gatcagggccaaggtaggaaggcaacccc 49651

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>gb|AC004466.1| Homo sapiens 12 PAC RPCI5-1057I20 (Roswell Park Cancer Institute Human
             PAC library) complete sequence
          Length = 122186

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 494   gatccgggccaaggaaggaaggcaacccc 522
             |||| ||||||||| ||||||||||||||
Sbjct: 33820 gatcagggccaaggtaggaaggcaacccc 33848

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>gb|AE000789.1| Borrelia burgdorferi B31 plasmid lp28-4, complete sequence
          Length = 27323

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 638   gcaacaaccaaagaaatcatc 658
             |||||||||||||||||||||
Sbjct: 19042 gcaacaaccaaagaaatcatc 19022

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>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03,
             complete sequence
          Length = 146278

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gcgaaggggttatcggtgtt 238
             ||||||||||||||||||||
Sbjct: 37562 gcgaaggggttatcggtgtt 37543

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>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0109A13,
              complete sequence
          Length = 134258

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    gcgaaggggttatcggtgtt 238
              ||||||||||||||||||||
Sbjct: 112989 gcgaaggggttatcggtgtt 112970

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>emb|AL139137.15| Human DNA sequence from clone RP11-58O13 on chromosome 1, complete
             sequence
          Length = 137269

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tggtcaatattttcacacac 93
             ||||||||||||||||||||
Sbjct: 66155 tggtcaatattttcacacac 66174

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>gb|AC092931.8| Homo sapiens 3 BAC RP11-131O20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152737

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   gcagtatatgaaataatact 333
             ||||||||||||||||||||
Sbjct: 23939 gcagtatatgaaataatact 23920

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>emb|AL050322.13|HSJ727I10 Human DNA sequence from clone RP4-727I10 on chromosome 20 Contains a
             novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 114152

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   tgcatctttgttggccataa 396
             ||||||||||||||||||||
Sbjct: 46097 tgcatctttgttggccataa 46078

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>emb|AL604046.8| Mouse DNA sequence from clone RP23-206D6 on chromosome 11 Contains
            the genes for olfactory receptor MOR135-14 and -3 , two
            olfactory receptor MOR135 pseudogenes, the gene for a
            novel olfactory receptor family MOR135 member, a zinc
            finger protein pseudogene, the 5' end of the gene for a
            novel KRAB box domain containing protein and a CpG
            island, complete sequence
          Length = 194873

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 517  aaccccctggaaagatgtat 536
            ||||||||||||||||||||
Sbjct: 8037 aaccccctggaaagatgtat 8056

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>emb|AL831789.6| Zebrafish DNA sequence from clone CH211-207O21 in linkage group 14
              Contains the zebrafish fgf24 gene for fibroblast growth
              factor 24, a novel gene for a RING finger protein, the
              lbx1h gene for lady bird-like homeobox 1 homolog,
              (Drosophila) and eight CpG islands, complete sequence
          Length = 217649

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     atattttcacacactcctat 99
              ||||||||||||||||||||
Sbjct: 151936 atattttcacacactcctat 151917

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>gb|AC093795.3| Homo sapiens BAC clone RP11-299P3 from 4, complete sequence
          Length = 183917

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    gcagtatatgaaataatact 333
              ||||||||||||||||||||
Sbjct: 106009 gcagtatatgaaataatact 106028

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>gb|AC093246.3| Homo sapiens chromosome 5 clone RP11-117L6, complete sequence
          Length = 175154

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 640   aacaaccaaagaaatcatcc 659
             ||||||||||||||||||||
Sbjct: 68951 aacaaccaaagaaatcatcc 68932

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 219      gcgaaggggttatcggtgtt 238
                ||||||||||||||||||||
Sbjct: 27286237 gcgaaggggttatcggtgtt 27286218

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     gcgaaggggttatcggtgtt 238
               ||||||||||||||||||||
Sbjct: 6588630 gcgaaggggttatcggtgtt 6588649

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      gcgaaggggttatcggtgtt 238
                ||||||||||||||||||||
Sbjct: 15329664 gcgaaggggttatcggtgtt 15329683



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     gcgaaggggttatcggtgtt 238
               ||||||||||||||||||||
Sbjct: 1774526 gcgaaggggttatcggtgtt 1774545

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 219      gcgaaggggttatcggtgtt 238
                ||||||||||||||||||||
Sbjct: 14886647 gcgaaggggttatcggtgtt 14886628

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      gcgaaggggttatcggtgtt 238
                ||||||||||||||||||||
Sbjct: 17714711 gcgaaggggttatcggtgtt 17714730

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>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC
             library) complete sequence
          Length = 123203

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   cctgtattcctcataccgtt 579
             ||||||||||||||||||||
Sbjct: 97439 cctgtattcctcataccgtt 97458

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>ref|NM_001007158.1| Danio rerio polycomb group ring finger 1 (pcgf1), mRNA
          Length = 878

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  atattttcacacactcctat 99
           ||||||||||||||||||||
Sbjct: 807 atattttcacacactcctat 788

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>gb|AC084674.1|CBRG47I21 Caenorhabditis briggsae cosmid G47I21, complete sequence
          Length = 43351

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 639   caacaaccaaagaaatcatc 658
             ||||||||||||||||||||
Sbjct: 40965 caacaaccaaagaaatcatc 40946

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>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0062G05
          Length = 152802

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    gcgaaggggttatcggtgtt 238
              ||||||||||||||||||||
Sbjct: 115295 gcgaaggggttatcggtgtt 115314

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>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0009H02
          Length = 155388

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcgaaggggttatcggtgtt 238
             ||||||||||||||||||||
Sbjct: 56887 gcgaaggggttatcggtgtt 56906

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>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1151D08
          Length = 152824

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcgaaggggttatcggtgtt 238
             ||||||||||||||||||||
Sbjct: 87300 gcgaaggggttatcggtgtt 87319

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>dbj|AP005630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0021C10
          Length = 119527

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcgaaggggttatcggtgtt 238
             ||||||||||||||||||||
Sbjct: 70725 gcgaaggggttatcggtgtt 70744

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>dbj|BS000242.1| Pan troglodytes chromosome 22 clone:PTB-120M01, map 22, complete
              sequences
          Length = 224098

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    cgaaggggttatcggtgttg 239
              ||||||||||||||||||||
Sbjct: 124824 cgaaggggttatcggtgttg 124805

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>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1790_D02
          Length = 162928

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gcgaaggggttatcggtgtt 238
             ||||||||||||||||||||
Sbjct: 15240 gcgaaggggttatcggtgtt 15259


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,080,762
Number of Sequences: 3902068
Number of extensions: 6080762
Number of successful extensions: 94775
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 94477
Number of HSP's gapped (non-prelim): 298
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result