ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-l... 82 2e-12
2gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-l... 82 2e-12
3gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 80 6e-12
4emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; c... 78 2e-11
5gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch s... 76 1e-10
6emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene 70 6e-09
7gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB fl... 68 2e-08
8dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nico... 68 2e-08
9gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-lik... 66 9e-08
10emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box prote... 64 4e-07
11emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin 64 4e-07
12gb|AY821694.1| Crithopsis delileana beta amylase gene, partial c... 58 2e-05
13gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 52 0.001
14gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochr... 52 0.001
15gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo p... 52 0.001
16gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 50 0.006
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.086
18gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.086
19gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.086
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
21dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
22dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
23gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 44 0.34
24dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
25dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.34
26gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1... 42 1.4
27gb|U41996.1| Caenorhabditis elegans cosmid F38E1, complete sequence 42 1.4
28emb|X64560.1|HVHSP17A H.vulgare hsp17 gene for 17 kd heat shock ... 42 1.4
29emb|X53156.1|CEGPA2G Caenorhabditis elegans gpa-2 gene for G-pro... 42 1.4
30emb|CR931733.2| Medicago truncatula chromosome 5 clone mth2-38a... 42 1.4
31ref|NM_072756.1| Caenorhabditis elegans G Protein, Alpha subunit... 42 1.4
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
33gb|AY008125.1| Caenorhabditis elegans isolate GPA-2 heterotrimer... 42 1.4
34dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
35emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5... 42 1.4
36emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 5.3
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
38dbj|AP005821.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
39dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
40dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
41dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
42gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, comple... 40 5.3 
>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene,
            complete cds
          Length = 2513

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                 
Query: 203  gcttagtacaattttatactagagctagtacaaggttgagacatttattttgg 255
            ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1375 gcttaatacaattttatactagagctagtacaaagttgagacaattattttgg 1323
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>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene,
            complete cds
          Length = 2550

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                 
Query: 203  gcttagtacaattttatactagagctagtacaaggttgagacatttattttgg 255
            ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1400 gcttaatacaattttatactagagctagtacaaagttgagacaattattttgg 1348
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                  
Query: 203    gcttagtacaattttatactagagctagtacaaggttgagacatttattttg 254
              ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 206087 gcttagtacaactttgtactagagctagtacaaagttgagacatttattttg 206036
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>emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; clone MWG0526.rev
          Length = 379

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                              
Query: 204 cttagtacaattttatactagagctagtacaaggttgagacatttattttg 254
           |||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct: 150 cttagtacaattttgtactagagctagtacaatgttgagacagttattttg 200
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>gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch synthase II gene, exon 9 and
           complete cds
          Length = 3856

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 206 tagtacaattttatactagagctagtacaaggttgagacatttattttgg 255
           |||||||||||| ||||||||||||||||| ||||||||| |||||||||
Sbjct: 939 tagtacaattttgtactagagctagtacaaagttgagacagttattttgg 988
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>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                   
Query: 203  gcttagtacaattttatactagagctagtacaaggttgagacatttattttggaa 257
            ||||||||||| ||| || |||||||||||||| ||||||||| |||||||||||
Sbjct: 7266 gcttagtacaactttgtagtagagctagtacaaagttgagacacttattttggaa 7212
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>gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB flanking T-DNA
           insertion sequence
          Length = 267

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 203 gcttagtacaattttatactagagctagtacaaggttgagacatttattttggaacaggg 262
           |||||||| ||||||||||||||||||| |||| ||| ||||| ||||||||| || | |
Sbjct: 85  gcttagtataattttatactagagctagaacaaagttaagacaattattttgggacggag 144

                     
Query: 263 gaagtagaaa 272
           | ||||||||
Sbjct: 145 ggagtagaaa 154
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>dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nicotianamine
            aminotransferase, complete cds
          Length = 10966

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                        
Query: 204  cttagtacaattttatactagagctagtacaaggttgagacatttattttggaacagggg 263
            ||||| |||||||||||||||| ||||||||| ||||| ||| ||||||||| |||| ||
Sbjct: 8935 cttagcacaattttatactagatctagtacaaagttgaaacagttattttgggacagagg 8994

                  
Query: 264  aagtag 269
             |||||
Sbjct: 8995 gagtag 9000
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>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene,
            complete cds
          Length = 4643

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 215  tttatactagagctagtacaaggttgagacatttattttgg 255
            ||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2089 tttatactagagctagtacaaagttgagacaattattttgg 2049
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>emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box protein (m1 gene)
          Length = 1086

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 203 gcttagtacaattttatactagagctagtacaaggttgagacatttattttg 254
           ||||||||||| ||| ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 979 gcttagtacaactttgtactagagctaatacaaagttgagacagttattttg 928
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>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin
          Length = 1884

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 48/52 (92%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                
Query: 203  gcttagtacaattttatactagagctagtacaaggttgagacatttattttg 254
            ||||||||||||||||||||| | ||||||||| ||||||||| ||||||||
Sbjct: 1882 gcttagtacaattttatacta-aactagtacaaagttgagacacttattttg 1832
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>gb|AY821694.1| Crithopsis delileana beta amylase gene, partial cds; and Stowaway
            MITE, complete sequence
          Length = 1521

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 203  gcttagtacaattttatactagagctagtacaaggttgagacatttattttgg 255
            ||||||||||| ||| ||||| || |||||||| ||||||||| |||||||||
Sbjct: 1266 gcttagtacaactttgtactaaagttagtacaaagttgagacacttattttgg 1214
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>gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai phytochrome C
            (PhyC) gene, complete cds
          Length = 4914

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 207  agtacaattttatactagagctagtacaaggttgagacatttattt 252
            ||||||||||| || ||||||||||||||  |||||||| ||||||
Sbjct: 4009 agtacaattttgtaatagagctagtacaaaattgagacacttattt 3964
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>gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochrome C (PhyC) gene,
            complete cds
          Length = 4938

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 207  agtacaattttatactagagctagtacaaggttgagacatttattt 252
            ||||||||||| || ||||||||||||||  |||||||| ||||||
Sbjct: 4009 agtacaattttgtaatagagctagtacaaaattgagacacttattt 3964
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>gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo phytochrome C (PhyC)
            gene, complete cds
          Length = 4914

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 207  agtacaattttatactagagctagtacaaggttgagacatttattt 252
            ||||||||||| || ||||||||||||||  |||||||| ||||||
Sbjct: 4009 agtacaattttgtaatagagctagtacaaaattgagacacttattt 3964
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 219   tactagagctagtacaaggttgagacatttattttgg 255
             ||||||||||||||||| || |||||| |||||||||
Sbjct: 31475 tactagagctagtacaaagtggagacacttattttgg 31511
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 246     tttattttggaacaggggaagta 268
               |||||||||||||||||||||||
Sbjct: 5157144 tttattttggaacaggggaagta 5157122
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>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0058P18, from chromosome 3, complete sequence
          Length = 155037

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 246   tttattttggaacaggggaagta 268
             |||||||||||||||||||||||
Sbjct: 12563 tttattttggaacaggggaagta 12585
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>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0091J11, from chromosome 3, complete sequence
          Length = 181163

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 246   tttattttggaacaggggaagta 268
             |||||||||||||||||||||||
Sbjct: 99374 tttattttggaacaggggaagta 99396
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 246     tttattttggaacaggggaagta 268
               |||||||||||||||||||||||
Sbjct: 5156359 tttattttggaacaggggaagta 5156337
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 165      aaataatactccctccgcccca 186
                ||||||||||||||||||||||
Sbjct: 11680985 aaataatactccctccgcccca 11681006



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     accggtaaaagttcgtacaa 43
              ||||||||||||||||||||
Sbjct: 612306 accggtaaaagttcgtacaa 612325
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 248      tattttggaacaggggaagtag 269
                ||||||||||||||||||||||
Sbjct: 34927511 tattttggaacaggggaagtag 34927532



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 163      aaaaataatactccctccgcccca 186
                ||||||||||||||||||| ||||
Sbjct: 25962103 aaaaataatactccctccgtccca 25962080
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 228   tagtacaaggttgagacatttatttt 253
             |||||||| |||||||||||||||||
Sbjct: 71141 tagtacaaagttgagacatttatttt 71166
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 165    aaataatactccctccgcccca 186
              ||||||||||||||||||||||
Sbjct: 115619 aaataatactccctccgcccca 115640
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>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 248   tattttggaacaggggaagtag 269
             ||||||||||||||||||||||
Sbjct: 87008 tattttggaacaggggaagtag 87029
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>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence
          Length = 132371

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 162    caaaaataatactccctccgcccca 186
              |||||||||||||||||||| ||||
Sbjct: 113657 caaaaataatactccctccgtccca 113633
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>gb|U41996.1| Caenorhabditis elegans cosmid F38E1, complete sequence
          Length = 32277

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 101   ttgcatagctttagtgtagagggtcagca 129
             ||||||| ||||| |||||||||||||||
Sbjct: 22048 ttgcatatctttaatgtagagggtcagca 22020
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>emb|X64560.1|HVHSP17A H.vulgare hsp17 gene for 17 kd heat shock protein
          Length = 1515

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 205 ttagtacaattttatactagagctagtacaaggttgagacatttatttt 253
           |||||||||||||||| || || ||||| || ||| ||||| |||||||
Sbjct: 194 ttagtacaattttatattaaagttagtataaagttcagacacttatttt 146
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>emb|X53156.1|CEGPA2G Caenorhabditis elegans gpa-2 gene for G-protein a'-2
          Length = 3783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 101  ttgcatagctttagtgtagagggtcagca 129
            ||||||| ||||| |||||||||||||||
Sbjct: 1588 ttgcatatctttaatgtagagggtcagca 1560
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>emb|CR931733.2| Medicago truncatula chromosome 5 clone  mth2-38a4, COMPLETE SEQUENCE
          Length = 124746

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 233    caaggttgagacatttatttt 253
              |||||||||||||||||||||
Sbjct: 112089 caaggttgagacatttatttt 112109
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>ref|NM_072756.1| Caenorhabditis elegans G Protein, Alpha subunit family member
           (gpa-2) (gpa-2) mRNA, complete cds
          Length = 1071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 ttgcatagctttagtgtagagggtcagca 129
           ||||||| ||||| |||||||||||||||
Sbjct: 345 ttgcatatctttaatgtagagggtcagca 317
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 162      caaaaataatactccctccgcccca 186
                |||||||||||||||||||| ||||
Sbjct: 10190516 caaaaataatactccctccgtccca 10190492
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>gb|AY008125.1| Caenorhabditis elegans isolate GPA-2 heterotrimeric G protein alpha
           subunit mRNA, complete cds
          Length = 1071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 101 ttgcatagctttagtgtagagggtcagca 129
           ||||||| ||||| |||||||||||||||
Sbjct: 345 ttgcatatctttaatgtagagggtcagca 317
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>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0023I13
          Length = 165911

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 162    caaaaataatactccctccgcccca 186
              |||||||||||||||||||| ||||
Sbjct: 149862 caaaaataatactccctccgtccca 149838
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>emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE
          Length = 210708

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 233    caaggttgagacatttatttt 253
              |||||||||||||||||||||
Sbjct: 204631 caaggttgagacatttatttt 204611
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>emb|BX321863.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 8/10
          Length = 286850

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    tggctgaatatttctttgac 335
              ||||||||||||||||||||
Sbjct: 141762 tggctgaatatttctttgac 141781
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 245     atttattttggaacaggggaagta 268
               |||||||||||||||| |||||||
Sbjct: 8355198 atttattttggaacagaggaagta 8355221
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>dbj|AP005821.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0094B20
          Length = 146270

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    accggtaaaagttcgtacaa 43
             ||||||||||||||||||||
Sbjct: 65316 accggtaaaagttcgtacaa 65335
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>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0603C10
          Length = 187620

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    atttattttggaacaggggaagta 268
              |||||||||||||||| |||||||
Sbjct: 148703 atttattttggaacagaggaagta 148726
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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1282_H11
          Length = 143314

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 163    aaaaataatactccctccgcccca 186
              ||||||||||||||||||| ||||
Sbjct: 113444 aaaaataatactccctccgtccca 113421
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>dbj|AP005306.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030D07
          Length = 133321

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   aaaaataatactccctccgcccca 186
             ||||||||||||||||||| ||||
Sbjct: 25976 aaaaataatactccctccgtccca 25953
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>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   tttatactagagctagtaca 234
             ||||||||||||||||||||
Sbjct: 56415 tttatactagagctagtaca 56434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,158,781
Number of Sequences: 3902068
Number of extensions: 3158781
Number of successful extensions: 83968
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83585
Number of HSP's gapped (non-prelim): 383
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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