>gb|AY109091.1| Zea mays PCO149758 mRNA sequence
          Length = 1014

 Score =  192 bits (97), Expect = 1e-45
 Identities = 199/233 (85%)
 Strand = Plus / Minus

                                                                       
Query: 438 atcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaaatgcgtcagcag 497
           |||||||| ||||||||| ||||||  |||| ||||||||| | || ||||| |||||||
Sbjct: 752 atcaagaaagcccaaatttggacaaggctgactgaaacaaactcgagaatgcctcagcag 693

                                                                       
Query: 498 tagtcccatcctcgaccttaattttgagctgggccttcgctgatgctgtgttcacaatgc 557
            ||| ||||| ||  |||| ||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 692 cagttccatcatcagccttgattttgagctgtgccttcgctgatgctgtgttgacaatac 633

                                                                       
Query: 558 attctacaaggtagacggcagcagccccagctttctgaccataaaagtagaacttgtaat 617
           |||| |||||| |||  |||||||||||| |||| ||| |||| ||  |||||||||| |
Sbjct: 632 attcaacaaggaagaaagcagcagccccatctttttgagcatagaaaaagaacttgtagt 573

                                                                
Query: 618 ttggaggctgaccgcctgaagcaatgcattgaatgtagttgctttgcatatga 670
           | ||||||||||||||||||||||| ||||| ||||  |||||||||||||||
Sbjct: 572 tcggaggctgaccgcctgaagcaatacattggatgtgattgctttgcatatga 520

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  143 bits (72), Expect = 9e-31
 Identities = 201/244 (82%)
 Strand = Plus / Minus

                                                                            
Query: 426      aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 485
                ||||||||||  |||||||| ||||||||| ||||||  |||| |||||||| || ||||
Sbjct: 24998979 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 24998920

                                                                            
Query: 486      atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 545
                |||| || ||||  |||||||| ||  |||| | ||||| ||| ||||||||||||||||
Sbjct: 24998919 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 24998860

                                                                            
Query: 546      tgttcacaatgcattctacaaggtagacggcagcagccccagctttctgaccataaaagt 605
                |||| || || |||||||||||| |||  || | ||| ||| | || ||| |||| ||  
Sbjct: 24998859 tgttgacgatacattctacaaggaagaaagcggtagcaccatccttttgagcatagaaaa 24998800

                                                                            
Query: 606      agaacttgtaatttggaggctgaccgcctgaagcaatgcattgaatgtagttgctttgca 665
                |||||||||| ||||| ||||| || ||||||||||| || |||||||||||| ||||||
Sbjct: 24998799 agaacttgtagtttgggggctggccacctgaagcaatacactgaatgtagttgttttgca 24998740

                    
Query: 666      tatg 669
                ||||
Sbjct: 24998739 tatg 24998736

>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0006C01
          Length = 153865

 Score =  143 bits (72), Expect = 9e-31
 Identities = 201/244 (82%)
 Strand = Plus / Minus

                                                                         
Query: 426   aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 485
             ||||||||||  |||||||| ||||||||| ||||||  |||| |||||||| || ||||
Sbjct: 71502 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 71443

                                                                         
Query: 486   atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 545
             |||| || ||||  |||||||| ||  |||| | ||||| ||| ||||||||||||||||
Sbjct: 71442 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 71383

                                                                         
Query: 546   tgttcacaatgcattctacaaggtagacggcagcagccccagctttctgaccataaaagt 605
             |||| || || |||||||||||| |||  || | ||| ||| | || ||| |||| ||  
Sbjct: 71382 tgttgacgatacattctacaaggaagaaagcggtagcaccatccttttgagcatagaaaa 71323

                                                                         
Query: 606   agaacttgtaatttggaggctgaccgcctgaagcaatgcattgaatgtagttgctttgca 665
             |||||||||| ||||| ||||| || ||||||||||| || |||||||||||| ||||||
Sbjct: 71322 agaacttgtagtttgggggctggccacctgaagcaatacactgaatgtagttgttttgca 71263

                 
Query: 666   tatg 669
             ||||
Sbjct: 71262 tatg 71259

>ref|NM_192888.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2541

 Score =  133 bits (67), Expect = 8e-28
 Identities = 190/231 (82%)
 Strand = Plus / Minus

                                                                        
Query: 439  tcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaaatgcgtcagcagt 498
            ||||||| ||||||||| ||||||  |||| |||||||| || |||||||| || |||| 
Sbjct: 2541 tcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaaatgcctctgcagc 2482

                                                                        
Query: 499  agtcccatcctcgaccttaattttgagctgggccttcgctgatgctgtgttcacaatgca 558
             |||||||| ||  |||| | ||||| ||| |||||||||||||||||||| || || ||
Sbjct: 2481 ggtcccatcatcagccttcactttgatctgtgccttcgctgatgctgtgttgacgataca 2422

                                                                        
Query: 559  ttctacaaggtagacggcagcagccccagctttctgaccataaaagtagaacttgtaatt 618
            |||||||||| |||  || | ||| ||| | || ||| |||| ||  |||||||||| ||
Sbjct: 2421 ttctacaaggaagaaagcggtagcaccatccttttgagcatagaaaaagaacttgtagtt 2362

                                                               
Query: 619  tggaggctgaccgcctgaagcaatgcattgaatgtagttgctttgcatatg 669
            ||| ||||| || ||||||||||| || |||||||||||| ||||||||||
Sbjct: 2361 tgggggctggccacctgaagcaatacactgaatgtagttgttttgcatatg 2311

>dbj|AK061897.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G12, full
           insert sequence
          Length = 599

 Score =  101 bits (51), Expect = 3e-18
 Identities = 120/143 (83%)
 Strand = Plus / Minus

                                                                       
Query: 426 aaaatgctcacaatcaagaacgcccaaattgggacaatactgattgaaacaaagtagaaa 485
           ||||||||||  |||||||| ||||||||| ||||||  |||| |||||||| || ||||
Sbjct: 176 aaaatgctcaggatcaagaaagcccaaatttggacaaagctgactgaaacaacgttgaaa 117

                                                                       
Query: 486 atgcgtcagcagtagtcccatcctcgaccttaattttgagctgggccttcgctgatgctg 545
           |||| || ||||  |||||||| ||  |||| | ||||| ||| ||||||||||||||||
Sbjct: 116 atgcctctgcagcggtcccatcatcagccttcactttgatctgtgccttcgctgatgctg 57

                                  
Query: 546 tgttcacaatgcattctacaagg 568
           |||| || || ||||||||||||
Sbjct: 56  tgttgacgatacattctacaagg 34

>gb|AC128644.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0009F15,
              complete sequence
          Length = 142289

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 299    tttcacctgctccaagcttct 319
              |||||||||||||||||||||
Sbjct: 130210 tttcacctgctccaagcttct 130190

>gb|AC138006.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0066O12, complete sequence
          Length = 22258

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 299   tttcacctgctccaagcttct 319
             |||||||||||||||||||||
Sbjct: 21608 tttcacctgctccaagcttct 21628

>gb|AY050309.1| Mus musculus podocin (Nphs2) mRNA, complete cds
          Length = 1530

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 578 gcagccccagctttctgacca 598
           |||||||||||||||||||||
Sbjct: 31  gcagccccagctttctgacca 11

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     tttcacctgctccaagcttct 319
               |||||||||||||||||||||
Sbjct: 4478847 tttcacctgctccaagcttct 4478827

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 299     tttcacctgctccaagcttct 319
               |||||||||||||||||||||
Sbjct: 4487541 tttcacctgctccaagcttct 4487521

>gb|AC107760.9| Mus musculus chromosome 15, clone RP23-189K4, complete sequence
          Length = 178900

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 588   ctttctgaccataaaagtagaacttgta 615
             ||||||||||||||||| |||| |||||
Sbjct: 10053 ctttctgaccataaaagaagaatttgta 10080

>gb|BC116614.1| Danio rerio opsin 4 (melanopsin), mRNA (cDNA clone MGC:136728
            IMAGE:7043557), complete cds
          Length = 3218

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  gggaaggctttgcttggagg 354
            ||||||||||||||||||||
Sbjct: 1594 gggaaggctttgcttggagg 1613

>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence
          Length = 39483

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 150   gatgactgaatgaaattgtatagt 173
             ||||||||||||||||||| ||||
Sbjct: 22593 gatgactgaatgaaattgtgtagt 22570

>gb|BC044711.1| Xenopus laevis heterogeneous nuclear ribonucleoprotein K, mRNA
           (cDNA clone MGC:53459 IMAGE:5572030), complete cds
          Length = 1499

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 608 aacttgtaatttggaggctg 627
           ||||||||||||||||||||
Sbjct: 73  aacttgtaatttggaggctg 54

>gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, complete sequence
          Length = 218109

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 588   ctttctgaccataaaagtagaacttgta 615
             ||||||||||||||||| |||| |||||
Sbjct: 89765 ctttctgaccataaaagaagaatttgta 89738

>gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 200439

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 577    agcagccccagctttctgaccata 600
              ||||||||||||||||| ||||||
Sbjct: 121007 agcagccccagctttctcaccata 120984

>emb|AL390883.13| Human DNA sequence from clone RP11-230N22 on chromosome 9, complete
             sequence
          Length = 76353

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 645   attgaatgtagttgctttgcatat 668
             ||||||||||||| ||||||||||
Sbjct: 29845 attgaatgtagttcctttgcatat 29868

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 579   cagccccagctttctgacca 598
             ||||||||||||||||||||
Sbjct: 74627 cagccccagctttctgacca 74646

>ref|NM_178289.2| Danio rerio opsin 4 (melanopsin) (opn4), mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  gggaaggctttgcttggagg 354
            ||||||||||||||||||||
Sbjct: 1507 gggaaggctttgcttggagg 1526

>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9
          Length = 81835

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tgcaaataaattacagatgt 41
             ||||||||||||||||||||
Sbjct: 79867 tgcaaataaattacagatgt 79886

>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tgcaaataaattacagatgt 41
             ||||||||||||||||||||
Sbjct: 74879 tgcaaataaattacagatgt 74898

>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tgtatagtaatgtacagtgc 185
             ||||||||||||||||||||
Sbjct: 68728 tgtatagtaatgtacagtgc 68709

>emb|BX004828.21| Zebrafish DNA sequence from clone DKEY-185M8, complete sequence
          Length = 161870

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 530   gccttcgctgatgctgtgttcaca 553
             |||||| |||||||||||||||||
Sbjct: 65461 gccttctctgatgctgtgttcaca 65438

>gb|AC035138.9| Homo sapiens chromosome 10 clone RP11-314D6, complete sequence
          Length = 184328

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 576   cagcagccccagctttctga 595
             ||||||||||||||||||||
Sbjct: 34033 cagcagccccagctttctga 34052

>gb|AC105123.4| Homo sapiens chromosome 15, clone RP11-94B17, complete sequence
          Length = 134569

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   cacccaccaaaagaaatccc 214
             ||||||||||||||||||||
Sbjct: 63819 cacccaccaaaagaaatccc 63838

>gb|AC091948.3| Homo sapiens chromosome 5 clone RP11-373N22, complete sequence
          Length = 172162

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    cctgcaaataaattacagat 39
             ||||||||||||||||||||
Sbjct: 20891 cctgcaaataaattacagat 20910

>gb|AC011346.5| Homo sapiens chromosome 5 clone CTC-295J13, complete sequence
          Length = 110077

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    cctgcaaataaattacagat 39
             ||||||||||||||||||||
Sbjct: 81917 cctgcaaataaattacagat 81936

>gb|AC123427.5| Rattus norvegicus 2 BAC CH230-523K1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 200687

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 647    tgaatgtagttgctttgcat 666
              ||||||||||||||||||||
Sbjct: 126486 tgaatgtagttgctttgcat 126467

>gb|AC120670.8| Rattus norvegicus 2 BAC CH230-23N23 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228097

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 647    tgaatgtagttgctttgcat 666
              ||||||||||||||||||||
Sbjct: 168257 tgaatgtagttgctttgcat 168276

>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10,
             complete sequence
          Length = 241472

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   atattgtggcagagccagaa 395
             ||||||||||||||||||||
Sbjct: 28720 atattgtggcagagccagaa 28701

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 376      atattgtggcagagccagaa 395
                ||||||||||||||||||||
Sbjct: 23478901 atattgtggcagagccagaa 23478882

>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2,
              complete sequence
          Length = 194313

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    gggaaggctttgcttggagg 354
              ||||||||||||||||||||
Sbjct: 168120 gggaaggctttgcttggagg 168101

>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence
          Length = 154814

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    atgtacgggaaggctttgct 348
              ||||||||||||||||||||
Sbjct: 116692 atgtacgggaaggctttgct 116673

>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_E05
          Length = 126978

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   atattgtggcagagccagaa 395
             ||||||||||||||||||||
Sbjct: 70316 atattgtggcagagccagaa 70297

>gb|AC153828.8| Mus musculus 6 BAC RP23-119D13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 218838

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 577    agcagccccagctttctgaccata 600
              ||||||||||||||||| ||||||
Sbjct: 211114 agcagccccagctttctcaccata 211137

>dbj|AB078421.1| Mus musculus ZHX1 gene for transcription factor zinc-fingers and
             homeoboxes 1, complete cds
          Length = 36210

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 588   ctttctgaccataaaagtagaacttgta 615
             ||||||||||||||||| |||| |||||
Sbjct: 16408 ctttctgaccataaaagaagaatttgta 16435

>gb|U19103.1|YSCL8039 Saccharomyces cerevisiae chromosome XII cosmid 8039
          Length = 31806

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   tctgaccataaaagtagaac 610
             ||||||||||||||||||||
Sbjct: 26718 tctgaccataaaagtagaac 26737

>gb|AY078161.1| Danio rerio melanopsin mRNA, complete cds
          Length = 1668

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  gggaaggctttgcttggagg 354
            ||||||||||||||||||||
Sbjct: 1507 gggaaggctttgcttggagg 1526


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,158,556
Number of Sequences: 3902068
Number of extensions: 6158556
Number of successful extensions: 116207
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115981
Number of HSP's gapped (non-prelim): 223
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)