ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20n07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK102597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 4e-85
2ref|XM_475231.1| Oryza sativa (japonica cultivar-group), predic... 315 1e-82
3gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome... 143 8e-31
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
5gb|AY110873.1| Zea mays CL10452_1 mRNA sequence 90 1e-14
6ref|XM_470643.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.002
8gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare str... 52 0.002
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
10gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
11dbj|AK066517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
12dbj|AK067660.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
13dbj|AK065181.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
14dbj|AK064951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
15gb|AY786506.1| Zinnia elegans microtubule associated protein (MA... 50 0.009
16gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, com... 44 0.55
17dbj|AP006110.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 2.2
18gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, compl... 40 8.6
19gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complet... 40 8.6
20gb|AF301553.1| Gallus gallus collapsin response mediator protein... 40 8.6
21emb|BX511129.15| Zebrafish DNA sequence from clone RP71-68N21 in... 40 8.6
22emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in ... 40 8.6
23emb|AL590617.10| Human DNA sequence from clone RP11-390P2 on chr... 40 8.6
24emb|AL732408.4| Mouse DNA sequence from clone RP23-135A24 on chr... 40 8.6
25ref|NM_204493.1| Gallus gallus dihydropyrimidinase-like 3 (DPYSL... 40 8.6
26gb|AC138019.26| Papio anubis clone rp41-133b2, complete sequence 40 8.6
27emb|BX323593.12| Zebrafish DNA sequence from clone DKEY-107I18 i... 40 8.6
28dbj|AK030276.1| Mus musculus 11 days pregnant adult female ovary... 40 8.6
29emb|BX255929.7| Zebrafish DNA sequence from clone CH211-271P5 in... 40 8.6
30ref|XM_393156.2| PREDICTED: Apis mellifera similar to plexus (LO... 40 8.6
31emb|CR925754.15| Zebrafish DNA sequence from clone CH211-148J16 ... 40 8.6
32emb|AL831708.9| Mouse DNA sequence from clone RP23-23B17 on chro... 40 8.6
33emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, c... 40 8.6
34emb|BX004822.12| Zebrafish DNA sequence from clone DKEY-18F18, c... 40 8.6

>dbj|AK102597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098J24, full
            insert sequence
          Length = 2265

 Score =  323 bits (163), Expect = 4e-85
 Identities = 446/538 (82%), Gaps = 3/538 (0%)
 Strand = Plus / Minus

                                                                        
Query: 96   agaattgtcggagcaatccttgggaagagaaacataatttgccggtatagaagcagctgt 155
            ||||||||| ||||||||||||||||| |  ||||| |||||||||||| |||  |||||
Sbjct: 1854 agaattgtctgagcaatccttgggaagggccacatagtttgccggtata-aag--gctgt 1798

                                                                        
Query: 156  cttgccagtgtccttcatctttccacaagacaagcctcccttgcgtgaaattggggtaga 215
            ||||||||| || ||||  |||||| |||||||||||||||||||||  || |||||| |
Sbjct: 1797 cttgccagtctctttcacttttccagaagacaagcctcccttgcgtgccatcggggtaca 1738

                                                                        
Query: 216  cacacgccggttgttaggagttccaccaacaatgttgacattagtactctgcccaagagg 275
             ||||| ||| || ||||||||||||  |  |||||| | || |  ||||||||||||||
Sbjct: 1737 gacacggcggctggtaggagttccactgattatgttggcgttcgagctctgcccaagagg 1678

                                                                        
Query: 276  tttccttgccgaaagcgggcgcataggactaggcttcgctccataggttgcaccttgttc 335
             ||||| |||||| | || |||  ||| || ||||||| |||| | || |||||||||||
Sbjct: 1677 cttcctagccgaaggtggacgcgcagggcttggcttcgttccaaacgtagcaccttgttc 1618

                                                                        
Query: 336  tgctgcaaactgctcttgtagtttcttaagttcccgtgatcggcgtttttcctcttcctt 395
            ||||||| |||| ||||| |||||||| || ||||| ||||| ||||| ||||| || ||
Sbjct: 1617 tgctgcatactgttcttgcagtttcttgagctcccgcgatcgccgtttctcctcatcttt 1558

                                                                        
Query: 396  ttgttgcctttcagaggtgtatttgtccaagctatccaaaagcctcatcttattatacag 455
             || || |||   ||||||||||  || || |||||||| ||||| ||||||| ||||| 
Sbjct: 1557 ctgctgtcttcttgaggtgtattcttctaaactatccaacagccttatcttatcatacat 1498

                                                                        
Query: 456  aaatggcgcgcccttctccttttcccaagctctaactttagcagtcaaattctccagcag 515
            ||||||  | || |||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 1497 aaatgggacaccgttctccttttcccaagctttaattttagcagttaaattctccagcag 1438

                                                                        
Query: 516  ggatggaattttgctgaccaatacccttgccttctccgcacgcttgagatttatgtgagc 575
             |||||||||||||| ||||  | |||||| || || ||  ||||||||||| |||||||
Sbjct: 1437 agatggaattttgctaaccagcatccttgctttttcagcgtgcttgagatttttgtgagc 1378

                                                                      
Query: 576  tcctcgaccagcattatagcgattttgatccccctcatattcaccgagccaaccctcc 633
            |||||||||||||||||||||||| ||||||   ||||||||| | ||||||| ||||
Sbjct: 1377 tcctcgaccagcattatagcgattctgatccttttcatattcatcaagccaactctcc 1320



to top

>ref|XM_475231.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1713

 Score =  315 bits (159), Expect = 1e-82
 Identities = 445/538 (82%), Gaps = 3/538 (0%)
 Strand = Plus / Minus

                                                                        
Query: 96   agaattgtcggagcaatccttgggaagagaaacataatttgccggtatagaagcagctgt 155
            ||||||||| ||||||||||||||||| |  ||||| |||||||||||| |||  |||||
Sbjct: 1704 agaattgtctgagcaatccttgggaagggccacatagtttgccggtata-aag--gctgt 1648

                                                                        
Query: 156  cttgccagtgtccttcatctttccacaagacaagcctcccttgcgtgaaattggggtaga 215
            ||||||||  || ||||  |||||| |||||||||||||||||||||  || |||||| |
Sbjct: 1647 cttgccagcctctttcacttttccagaagacaagcctcccttgcgtgccatcggggtaca 1588

                                                                        
Query: 216  cacacgccggttgttaggagttccaccaacaatgttgacattagtactctgcccaagagg 275
             ||||| ||| || ||||||||||||  |  |||||| | || |  ||||||||||||||
Sbjct: 1587 gacacggcggctggtaggagttccactgattatgttggcgttcgagctctgcccaagagg 1528

                                                                        
Query: 276  tttccttgccgaaagcgggcgcataggactaggcttcgctccataggttgcaccttgttc 335
             ||||| |||||| | || |||  ||| || ||||||| |||| | || |||||||||||
Sbjct: 1527 cttcctagccgaaggtggacgcgcagggcttggcttcgttccaaacgtagcaccttgttc 1468

                                                                        
Query: 336  tgctgcaaactgctcttgtagtttcttaagttcccgtgatcggcgtttttcctcttcctt 395
            ||||||| |||| ||||| |||||||| || ||||| ||||| ||||| ||||| || ||
Sbjct: 1467 tgctgcatactgttcttgcagtttcttgagctcccgcgatcgccgtttctcctcatcttt 1408

                                                                        
Query: 396  ttgttgcctttcagaggtgtatttgtccaagctatccaaaagcctcatcttattatacag 455
             || || |||   ||||||||||  || || |||||||| ||||| ||||||| ||||| 
Sbjct: 1407 ctgctgtcttcttgaggtgtattcttctaaactatccaacagccttatcttatcatacat 1348

                                                                        
Query: 456  aaatggcgcgcccttctccttttcccaagctctaactttagcagtcaaattctccagcag 515
            ||||||  | || |||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 1347 aaatgggacaccgttctccttttcccaagctttaattttagcagttaaattctccagcag 1288

                                                                        
Query: 516  ggatggaattttgctgaccaatacccttgccttctccgcacgcttgagatttatgtgagc 575
             |||||||||||||| ||||  | |||||| || || ||  ||||||||||| |||||||
Sbjct: 1287 agatggaattttgctaaccagcatccttgctttttcagcgtgcttgagatttttgtgagc 1228

                                                                      
Query: 576  tcctcgaccagcattatagcgattttgatccccctcatattcaccgagccaaccctcc 633
            |||||||||||||||||||||||| ||||||   ||||||||| | ||||||| ||||
Sbjct: 1227 tcctcgaccagcattatagcgattctgatccttttcatattcatcaagccaactctcc 1170



to top

>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18,
              complete sequence
          Length = 123508

 Score =  143 bits (72), Expect = 8e-31
 Identities = 220/267 (82%), Gaps = 3/267 (1%)
 Strand = Plus / Minus

                                                                          
Query: 96     agaattgtcggagcaatccttgggaagagaaacataatttgccggtatagaagcagctgt 155
              ||||||||| ||||||||||||||||| |  ||||| |||||||||||| |||  |||||
Sbjct: 102059 agaattgtctgagcaatccttgggaagggccacatagtttgccggtata-aag--gctgt 102003

                                                                          
Query: 156    cttgccagtgtccttcatctttccacaagacaagcctcccttgcgtgaaattggggtaga 215
              ||||||||  || ||||  |||||| |||||||||||||||||||||  || |||||| |
Sbjct: 102002 cttgccagcctctttcacttttccagaagacaagcctcccttgcgtgccatcggggtaca 101943

                                                                          
Query: 216    cacacgccggttgttaggagttccaccaacaatgttgacattagtactctgcccaagagg 275
               ||||| ||| || ||||||||||||  |  |||||| | || |  ||||||||||||||
Sbjct: 101942 gacacggcggctggtaggagttccactgattatgttggcgttcgagctctgcccaagagg 101883

                                                                          
Query: 276    tttccttgccgaaagcgggcgcataggactaggcttcgctccataggttgcaccttgttc 335
               ||||| |||||| | || |||  ||| || ||||||| |||| | || |||||||||||
Sbjct: 101882 cttcctagccgaaggtggacgcgcagggcttggcttcgttccaaacgtagcaccttgttc 101823

                                         
Query: 336    tgctgcaaactgctcttgtagtttctt 362
              ||||||| |||| ||||| ||||||||
Sbjct: 101822 tgctgcatactgttcttgcagtttctt 101796



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                          
Query: 518    atggaattttgctgaccaatacccttgccttctccgcacgcttgagatttatgtgagctc 577
              ||||||||||||| ||||  | |||||| || || ||  ||||||||||| |||||||||
Sbjct: 100767 atggaattttgctaaccagcatccttgctttttcagcgtgcttgagatttttgtgagctc 100708

                                           
Query: 578    ctcgaccagcattatagcgattttgatcc 606
              |||||||||||||||||||||| ||||||
Sbjct: 100707 ctcgaccagcattatagcgattctgatcc 100679



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                          
Query: 444    cttattatacagaaatggcgcgcccttctccttttcccaagctctaactttagcagtcaa 503
              ||||| ||||| ||||||  | || |||||||||||||||||| ||| ||||||||| ||
Sbjct: 101252 cttatcatacataaatgggacaccgttctccttttcccaagctttaattttagcagttaa 101193

                          
Query: 504    attctccagcag 515
              ||||||||||||
Sbjct: 101192 attctccagcag 101181



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 8e-31
 Identities = 220/267 (82%), Gaps = 3/267 (1%)
 Strand = Plus / Minus

                                                                            
Query: 96       agaattgtcggagcaatccttgggaagagaaacataatttgccggtatagaagcagctgt 155
                ||||||||| ||||||||||||||||| |  ||||| |||||||||||| |||  |||||
Sbjct: 19849435 agaattgtctgagcaatccttgggaagggccacatagtttgccggtata-aag--gctgt 19849379

                                                                            
Query: 156      cttgccagtgtccttcatctttccacaagacaagcctcccttgcgtgaaattggggtaga 215
                ||||||||  || ||||  |||||| |||||||||||||||||||||  || |||||| |
Sbjct: 19849378 cttgccagcctctttcacttttccagaagacaagcctcccttgcgtgccatcggggtaca 19849319

                                                                            
Query: 216      cacacgccggttgttaggagttccaccaacaatgttgacattagtactctgcccaagagg 275
                 ||||| ||| || ||||||||||||  |  |||||| | || |  ||||||||||||||
Sbjct: 19849318 gacacggcggctggtaggagttccactgattatgttggcgttcgagctctgcccaagagg 19849259

                                                                            
Query: 276      tttccttgccgaaagcgggcgcataggactaggcttcgctccataggttgcaccttgttc 335
                 ||||| |||||| | || |||  ||| || ||||||| |||| | || |||||||||||
Sbjct: 19849258 cttcctagccgaaggtggacgcgcagggcttggcttcgttccaaacgtagcaccttgttc 19849199

                                           
Query: 336      tgctgcaaactgctcttgtagtttctt 362
                ||||||| |||| ||||| ||||||||
Sbjct: 19849198 tgctgcatactgttcttgcagtttctt 19849172



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 518      atggaattttgctgaccaatacccttgccttctccgcacgcttgagatttatgtgagctc 577
                ||||||||||||| ||||  | |||||| || || ||  ||||||||||| |||||||||
Sbjct: 19848143 atggaattttgctaaccagcatccttgctttttcagcgtgcttgagatttttgtgagctc 19848084

                                             
Query: 578      ctcgaccagcattatagcgattttgatcc 606
                |||||||||||||||||||||| ||||||
Sbjct: 19848083 ctcgaccagcattatagcgattctgatcc 19848055



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                            
Query: 444      cttattatacagaaatggcgcgcccttctccttttcccaagctctaactttagcagtcaa 503
                ||||| ||||| ||||||  | || |||||||||||||||||| ||| ||||||||| ||
Sbjct: 19848628 cttatcatacataaatgggacaccgttctccttttcccaagctttaattttagcagttaa 19848569

                            
Query: 504      attctccagcag 515
                ||||||||||||
Sbjct: 19848568 attctccagcag 19848557



to top

>gb|AY110873.1| Zea mays CL10452_1 mRNA sequence
          Length = 517

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 132/161 (81%)
 Strand = Plus / Plus

                                                                       
Query: 232 ggagttccaccaacaatgttgacattagtactctgcccaagaggtttccttgccgaaagc 291
           ||||||||||||| ||| ||| ||||||  |||||||||||||| |||||||  ||||| 
Sbjct: 243 ggagttccaccaataatattggcattagagctctgcccaagaggcttccttgaagaaaga 302

                                                                       
Query: 292 gggcgcataggactaggcttcgctccataggttgcaccttgttctgctgcaaactgctct 351
           || || ||||| || || |||| |||  |  | |||||||| ||||  |||||||| |||
Sbjct: 303 ggacggatagggcttggtttcgttccgaacttggcaccttgctctgtagcaaactgttct 362

                                                    
Query: 352 tgtagtttcttaagttcccgtgatcggcgtttttcctcttc 392
           || |||||||| | ||||| ||||||||| |||||||||||
Sbjct: 363 tgcagtttcttcaattcccttgatcggcgcttttcctcttc 403



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 472 tccttttcccaagctctaactttagcagtcaa 503
           ||||||||||| ||| ||| ||||||||||||
Sbjct: 483 tccttttcccaggctttaattttagcagtcaa 514



to top

>ref|XM_470643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1824

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 540  ccttgccttctccgcacgcttgagatttat 569
            |||||||||||| |||||||||||||||||
Sbjct: 1302 ccttgccttctctgcacgcttgagatttat 1273



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 540     ccttgccttctccgcacgcttgagatttat 569
               |||||||||||| |||||||||||||||||
Sbjct: 7249374 ccttgccttctctgcacgcttgagatttat 7249403



to top

>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
           OSJNBa0060E18, from chromosome 3, complete sequence
          Length = 147983

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 540 ccttgccttctccgcacgcttgagatttat 569
           |||||||||||| |||||||||||||||||
Sbjct: 630 ccttgccttctctgcacgcttgagatttat 659



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 540     ccttgccttctccgcacgcttgagatttat 569
               |||||||||||| |||||||||||||||||
Sbjct: 7247269 ccttgccttctctgcacgcttgagatttat 7247298



to top

>gb|AC134229.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1081D05,
             complete sequence
          Length = 99133

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 540   ccttgccttctccgcacgcttgagatttat 569
             |||||||||||| |||||||||||||||||
Sbjct: 76127 ccttgccttctctgcacgcttgagatttat 76156



to top

>dbj|AK066517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069B13, full
            insert sequence
          Length = 1788

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 540  ccttgccttctccgcacgcttgagatttat 569
            |||||||||||| |||||||||||||||||
Sbjct: 1648 ccttgccttctctgcacgcttgagatttat 1619



to top

>dbj|AK067660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116C06, full
            insert sequence
          Length = 3638

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 540  ccttgccttctccgcacgcttgagatttat 569
            |||||||||||| |||||||||||||||||
Sbjct: 1603 ccttgccttctctgcacgcttgagatttat 1574



to top

>dbj|AK065181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D18, full
            insert sequence
          Length = 2554

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 540  ccttgccttctccgcacgcttgagatttat 569
            |||||||||||| |||||||||||||||||
Sbjct: 1602 ccttgccttctctgcacgcttgagatttat 1573



to top

>dbj|AK064951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P23, full
            insert sequence
          Length = 3153

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 540  ccttgccttctccgcacgcttgagatttat 569
            |||||||||||| |||||||||||||||||
Sbjct: 1605 ccttgccttctctgcacgcttgagatttat 1576



to top

>gb|AY786506.1| Zinnia elegans microtubule associated protein (MAP65) mRNA, complete
            cds
          Length = 2048

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 520  ggaattttgctgaccaatacccttgccttctccgcacgcttgagattta 568
            |||||||| |||||||| || || |||||||| || |||||||||||||
Sbjct: 1409 ggaattttactgaccaaaactctagccttctcagctcgcttgagattta 1361



to top

>gb|AC104236.2| Homo sapiens chromosome 15, clone RP11-24J19, complete sequence
          Length = 160392

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 387   ctcttccttttgttgcctttca 408
             ||||||||||||||||||||||
Sbjct: 83768 ctcttccttttgttgcctttca 83789



to top

>dbj|AP006110.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT39G11, TM0195b,
             complete sequence
          Length = 52245

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   gttccaccaacaatgttgaca 255
             |||||||||||||||||||||
Sbjct: 36939 gttccaccaacaatgttgaca 36919



to top

>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence
          Length = 207763

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     atgaaattacaagctagaga 58
              ||||||||||||||||||||
Sbjct: 133409 atgaaattacaagctagaga 133428



to top

>gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complete sequence
          Length = 71082

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gcccttctccttttcccaag 484
             ||||||||||||||||||||
Sbjct: 39645 gcccttctccttttcccaag 39626



to top

>gb|AF301553.1| Gallus gallus collapsin response mediator protein-4B (CRMP4B) mRNA,
            complete cds
          Length = 2202

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 380  gtttttcctcttccttttgt 399
            ||||||||||||||||||||
Sbjct: 1971 gtttttcctcttccttttgt 1990



to top

>emb|BX511129.15| Zebrafish DNA sequence from clone RP71-68N21 in linkage group 9,
             complete sequence
          Length = 152922

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gcattaacaagcagttaaac 20
             ||||||||||||||||||||
Sbjct: 26027 gcattaacaagcagttaaac 26046



to top

>emb|BX321882.7| Zebrafish DNA sequence from clone DKEYP-30F1 in linkage group 12,
             complete sequence
          Length = 187475

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcattaacaagcagttaaac 20
             ||||||||||||||||||||
Sbjct: 14520 gcattaacaagcagttaaac 14501



to top

>emb|AL590617.10| Human DNA sequence from clone RP11-390P2 on chromosome 6, complete
             sequence
          Length = 124699

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   tcatctttccacaagacaag 189
             ||||||||||||||||||||
Sbjct: 29643 tcatctttccacaagacaag 29662



to top

>emb|AL732408.4| Mouse DNA sequence from clone RP23-135A24 on chromosome 13 Contains a
             prolactin (Prl) pseudogene and the 3' end of the Plfr gene
             for proliferin related protein, complete sequence
          Length = 29333

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    cattttcacatgcaagaatt 101
             ||||||||||||||||||||
Sbjct: 25894 cattttcacatgcaagaatt 25875



to top

>ref|NM_204493.1| Gallus gallus dihydropyrimidinase-like 3 (DPYSL3), mRNA
          Length = 2202

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 380  gtttttcctcttccttttgt 399
            ||||||||||||||||||||
Sbjct: 1971 gtttttcctcttccttttgt 1990



to top

>gb|AC138019.26| Papio anubis clone rp41-133b2, complete sequence
          Length = 204007

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    gctgtcttgccagtgtcctt 170
              ||||||||||||||||||||
Sbjct: 102447 gctgtcttgccagtgtcctt 102466



to top

>emb|BX323593.12| Zebrafish DNA sequence from clone DKEY-107I18 in linkage group 14,
              complete sequence
          Length = 198776

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ttaacaagcagttaaaccta 23
              ||||||||||||||||||||
Sbjct: 108919 ttaacaagcagttaaaccta 108900



to top

>dbj|AK030276.1| Mus musculus 11 days pregnant adult female ovary and uterus cDNA,
            RIKEN full-length enriched library, clone:5031402A17
            product:PROLIFERIN-RELATED PROTEIN PRECURSOR, full insert
            sequence
          Length = 3658

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   cattttcacatgcaagaatt 101
            ||||||||||||||||||||
Sbjct: 3271 cattttcacatgcaagaatt 3290



to top

>emb|BX255929.7| Zebrafish DNA sequence from clone CH211-271P5 in linkage group 14,
             complete sequence
          Length = 147460

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcattaacaagcagttaaac 20
             ||||||||||||||||||||
Sbjct: 73025 gcattaacaagcagttaaac 73006



to top

>ref|XM_393156.2| PREDICTED: Apis mellifera similar to plexus (LOC409658), mRNA
          Length = 6855

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 427  ctatccaaaagcctcatctt 446
            ||||||||||||||||||||
Sbjct: 6410 ctatccaaaagcctcatctt 6391



to top

>emb|CR925754.15| Zebrafish DNA sequence from clone CH211-148J16 in linkage group 6,
              complete sequence
          Length = 150312

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gcattaacaagcagttaaac 20
              ||||||||||||||||||||
Sbjct: 100767 gcattaacaagcagttaaac 100786



to top

>emb|AL831708.9| Mouse DNA sequence from clone RP23-23B17 on chromosome X, complete
             sequence
          Length = 113082

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    acattttcacatgcaagaat 100
             ||||||||||||||||||||
Sbjct: 48909 acattttcacatgcaagaat 48928



to top

>emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, complete sequence
          Length = 209611

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcattaacaagcagttaaac 20
             ||||||||||||||||||||
Sbjct: 39689 gcattaacaagcagttaaac 39670



to top

>emb|BX004822.12| Zebrafish DNA sequence from clone DKEY-18F18, complete sequence
          Length = 201902

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcattaacaagcagttaaac 20
             ||||||||||||||||||||
Sbjct: 54074 gcattaacaagcagttaaac 54055


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,667,488
Number of Sequences: 3902068
Number of extensions: 5667488
Number of successful extensions: 108204
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107999
Number of HSP's gapped (non-prelim): 198
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top