ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal0a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 1.4
2V1BR_HUMAN (P47901) Vasopressin V1b receptor (V1bR) (AVPR V1b) (... 28 7.0
3PDR9_ARATH (Q9LFH0) Probable pleiotropic drug resistance protein 9 27 9.1
4EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (... 27 9.1

>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 303 RNLNDASPAQRPCDPSSYHESSD 371
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>V1BR_HUMAN (P47901) Vasopressin V1b receptor (V1bR) (AVPR V1b) (Vasopressin V3|
           receptor) (AVPR V3) (Antidiuretic hormone receptor 1b)
          Length = 424

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 73  VKGFRLYSFQLPDTNAPGIVIYCHYLPVSGLGNLRACCLPWMW*PF----LRLPLRN 231
           V+ + ++    PD ++  +      L    LGNL +CC PW++  F    L  PLR+
Sbjct: 300 VQMWSVWDKNAPDEDSTNVAFTISML----LGNLNSCCNPWIYMGFNSHLLPRPLRH 352



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>PDR9_ARATH (Q9LFH0) Probable pleiotropic drug resistance protein 9|
          Length = 1450

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 58   LQWILVKGFRLYS-FQLPDTNAPGIVIYCHYL 150
            LQ +   GF L+S F +P T  PG  I+ +YL
Sbjct: 1343 LQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYL 1374



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>EMID1_HUMAN (Q96A84) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 441

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 83  LDCTHSNYQTLTRPVLLFIVTTSPCQDWVICAPAAFLGCGSRFSGSL 223
           + C  S+Y+T+ RP    +      ++W  C   + + C    S SL
Sbjct: 66  MSCPGSSYRTVVRPTYKVMYKIVTAREWRCCPGHSGVSCEEASSASL 112


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,701,416
Number of Sequences: 219361
Number of extensions: 1021135
Number of successful extensions: 1981
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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