Clone Information

BLAST Search Result

Clone Name	rbags21c02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK121774.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	174	3e-40
2	dbj\|AK111962.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	174	3e-40
3	dbj\|AK111498.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	174	3e-40
4	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	115	2e-22
5	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	115	2e-22
6	emb\|AL831801.4\|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb...	115	2e-22
7	gb\|AY109216.1\| Zea mays PCO122680 mRNA sequence	76	2e-10
8	gb\|BT020443.1\| Arabidopsis thaliana At5g63260 mRNA, complete cds	42	2.5
9	ref\|NM_125721.2\| Arabidopsis thaliana nucleic acid binding AT5G6...	42	2.5
10	gb\|BT020223.1\| Arabidopsis thaliana At5g63260 mRNA, complete cds	42	2.5
11	emb\|BX829663.1\|CNS09ZXX Arabidopsis thaliana Full-length cDNA Co...	42	2.5
12	emb\|BX831419.1\|CNS09ZG2 Arabidopsis thaliana Full-length cDNA Co...	42	2.5
13	gb\|AC009480.4\| Homo sapiens BAC clone RP11-295N18 from 2, comple...	42	2.5
14	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	42	2.5
15	gb\|AC003119.1\|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-...	40	9.8
16	gb\|AC149474.15\| Medicago truncatula clone mth2-122l24, complete ...	40	9.8
17	gb\|AC149080.14\| Medicago truncatula clone mth2-75j5, complete se...	40	9.8
18	emb\|BX901976.22\| Zebrafish DNA sequence from clone DKEY-101P20 i...	40	9.8
19	gb\|AC073359.12\| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Canc...	40	9.8
20	emb\|BX324146.10\| Zebrafish DNA sequence from clone CH211-207C15 ...	40	9.8
21	gb\|AC011912.7\|AC011912 Homo sapiens chromosome 15 clone RP11-547...	40	9.8
22	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
23	emb\|AL805896.12\| Mouse DNA sequence from clone RP23-402I8 on chr...	40	9.8
24	dbj\|AP001859.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
25	dbj\|AP003434.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.8
26	gb\|AC073895.22\| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Can...	40	9.8
27	emb\|AL953841.5\| Zebrafish DNA sequence from clone DKEY-44G23 in ...	40	9.8
28	gb\|CP000009.1\| Gluconobacter oxydans 621H, complete genome	40	9.8
29	emb\|BX001053.7\| Mouse DNA sequence from clone RP23-199B9 on chro...	40	9.8
30	emb\|AL772276.15\| Mouse DNA sequence from clone RP23-335F19 on ch...	40	9.8
31	gb\|AC140929.4\| Mus musculus BAC clone RP23-258I3 from 8, complet...	40	9.8
32	emb\|AL844900.3\| Mouse DNA sequence from clone RP23-301L16 on chr...	40	9.8
33	emb\|AL732402.5\| Mouse DNA sequence from clone RP23-402I13 on chr...	40	9.8

>dbj|AK121774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M18, full
            insert sequence
          Length = 2001

 Score =  174 bits (88), Expect = 3e-40
 Identities = 260/318 (81%), Gaps = 6/318 (1%)
 Strand = Plus / Minus

                                                                        
Query: 395  aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 454
            |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 1648 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 1589

                                                                        
Query: 455  atagtatgtgcacatgggctgatcaggtctgagtggcaagccgagaggactaagagctct 514
            ||||||||||||||  |||||||||||| | |  |||||||| ||||| |||||||||| 
Sbjct: 1588 atagtatgtgcacacaggctgatcaggttttataggcaagccaagagggctaagagctc- 1530

                                                                        
Query: 515  ggctgttggtggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaattt 574
                  || |||||||||  |||||||||| ||||| || |||||||| | | | |||||
Sbjct: 1529 -----ctgctggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaattt 1475

                                                                        
Query: 575  acaaaacccacttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattc 634
             ||||| ||||| || |||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 1474 gcaaaaaccactcttcacaaaatgctgacattcaggttggccaggtctctctgggtattc 1415

                                                                        
Query: 635  atcggagggcagttcttgatgtccctgtacatctgctnccctgtacataggatgattcac 694
             ||||| || |  |  ||||||||  |||  |||| | || |||||||||||||||| | 
Sbjct: 1414 ctcggaaggaacctgctgatgtccaggtatttctggtgccttgtacataggatgatttat 1355

                              
Query: 695  aggaggagctggaaaatg 712
            ||||| ||||||||||||
Sbjct: 1354 aggagcagctggaaaatg 1337

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>dbj|AK111962.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B06, full
            insert sequence
          Length = 1896

 Score =  174 bits (88), Expect = 3e-40
 Identities = 260/318 (81%), Gaps = 6/318 (1%)
 Strand = Plus / Minus

                                                                        
Query: 395  aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 454
            |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 1574 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 1515

                                                                        
Query: 455  atagtatgtgcacatgggctgatcaggtctgagtggcaagccgagaggactaagagctct 514
            ||||||||||||||  |||||||||||| | |  |||||||| ||||| |||||||||| 
Sbjct: 1514 atagtatgtgcacacaggctgatcaggttttataggcaagccaagagggctaagagctc- 1456

                                                                        
Query: 515  ggctgttggtggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaattt 574
                  || |||||||||  |||||||||| ||||| || |||||||| | | | |||||
Sbjct: 1455 -----ctgctggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaattt 1401

                                                                        
Query: 575  acaaaacccacttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattc 634
             ||||| ||||| || |||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 1400 gcaaaaaccactcttcacaaaatgctgacattcaggttggccaggtctctctgggtattc 1341

                                                                        
Query: 635  atcggagggcagttcttgatgtccctgtacatctgctnccctgtacataggatgattcac 694
             ||||| || |  |  ||||||||  |||  |||| | || |||||||||||||||| | 
Sbjct: 1340 ctcggaaggaacctgctgatgtccaggtatttctggtgccttgtacataggatgatttat 1281

                              
Query: 695  aggaggagctggaaaatg 712
            ||||| ||||||||||||
Sbjct: 1280 aggagcagctggaaaatg 1263

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>dbj|AK111498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H23, full
            insert sequence
          Length = 1919

 Score =  174 bits (88), Expect = 3e-40
 Identities = 260/318 (81%), Gaps = 6/318 (1%)
 Strand = Plus / Minus

                                                                        
Query: 395  aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 454
            |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 1591 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 1532

                                                                        
Query: 455  atagtatgtgcacatgggctgatcaggtctgagtggcaagccgagaggactaagagctct 514
            ||||||||||||||  |||||||||||| | |  |||||||| ||||| |||||||||| 
Sbjct: 1531 atagtatgtgcacacaggctgatcaggttttataggcaagccaagagggctaagagctc- 1473

                                                                        
Query: 515  ggctgttggtggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaattt 574
                  || |||||||||  |||||||||| ||||| || |||||||| | | | |||||
Sbjct: 1472 -----ctgctggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaattt 1418

                                                                        
Query: 575  acaaaacccacttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattc 634
             ||||| ||||| || |||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 1417 gcaaaaaccactcttcacaaaatgctgacattcaggttggccaggtctctctgggtattc 1358

                                                                        
Query: 635  atcggagggcagttcttgatgtccctgtacatctgctnccctgtacataggatgattcac 694
             ||||| || |  |  ||||||||  |||  |||| | || |||||||||||||||| | 
Sbjct: 1357 ctcggaaggaacctgctgatgtccaggtatttctggtgccttgtacataggatgatttat 1298

                              
Query: 695  aggaggagctggaaaatg 712
            ||||| ||||||||||||
Sbjct: 1297 aggagcagctggaaaatg 1280

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  115 bits (58), Expect = 2e-22
 Identities = 156/189 (82%)
 Strand = Plus / Plus

                                                                            
Query: 524      tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 583
                |||||||||  |||||||||| ||||| || |||||||| | | | ||||| ||||| ||
Sbjct: 10435989 tggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaatttgcaaaaacc 10436048

                                                                            
Query: 584      acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 643
                ||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 10436049 actcttcacaaaatgctgacattcaggttggccaggtctctctgggtattcctcggaagg 10436108

                                                                            
Query: 644      cagttcttgatgtccctgtacatctgctnccctgtacataggatgattcacaggaggagc 703
                 |  |  ||||||||  |||  |||| | || |||||||||||||||| | ||||| |||
Sbjct: 10436109 aacctgctgatgtccaggtatttctggtgccttgtacataggatgatttataggagcagc 10436168

                         
Query: 704      tggaaaatg 712
                |||||||||
Sbjct: 10436169 tggaaaatg 10436177



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                            
Query: 395      aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 454
                |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 10435481 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 10435540

                                        
Query: 455      atagtatgtgcacatgggctgatc 478
                ||||||||||||||  ||||||||
Sbjct: 10435541 atagtatgtgcacacaggctgatc 10435564

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  115 bits (58), Expect = 2e-22
 Identities = 156/189 (82%)
 Strand = Plus / Plus

                                                                            
Query: 524      tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 583
                |||||||||  |||||||||| ||||| || |||||||| | | | ||||| ||||| ||
Sbjct: 10435871 tggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaatttgcaaaaacc 10435930

                                                                            
Query: 584      acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 643
                ||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 10435931 actcttcacaaaatgctgacattcaggttggccaggtctctctgggtattcctcggaagg 10435990

                                                                            
Query: 644      cagttcttgatgtccctgtacatctgctnccctgtacataggatgattcacaggaggagc 703
                 |  |  ||||||||  |||  |||| | || |||||||||||||||| | ||||| |||
Sbjct: 10435991 aacctgctgatgtccaggtatttctggtgccttgtacataggatgatttataggagcagc 10436050

                         
Query: 704      tggaaaatg 712
                |||||||||
Sbjct: 10436051 tggaaaatg 10436059



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                            
Query: 395      aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 454
                |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 10435363 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 10435422

                                        
Query: 455      atagtatgtgcacatgggctgatc 478
                ||||||||||||||  ||||||||
Sbjct: 10435423 atagtatgtgcacacaggctgatc 10435446

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>emb|AL831801.4|CNS08CAE Oryza sativa chromosome 12, . BAC OSJNBb0094I20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130454

 Score =  115 bits (58), Expect = 2e-22
 Identities = 156/189 (82%)
 Strand = Plus / Plus

                                                                         
Query: 524   tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 583
             |||||||||  |||||||||| ||||| || |||||||| | | | ||||| ||||| ||
Sbjct: 88490 tggaggcaccggtgaccttgggtggtgatatttgcacttcatcctaaatttgcaaaaacc 88549

                                                                         
Query: 584   acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 643
             ||| || |||||||| ||||||||||| | ||||||||||||||||||||| ||||| ||
Sbjct: 88550 actcttcacaaaatgctgacattcaggttggccaggtctctctgggtattcctcggaagg 88609

                                                                         
Query: 644   cagttcttgatgtccctgtacatctgctnccctgtacataggatgattcacaggaggagc 703
              |  |  ||||||||  |||  |||| | || |||||||||||||||| | ||||| |||
Sbjct: 88610 aacctgctgatgtccaggtatttctggtgccttgtacataggatgatttataggagcagc 88669

                      
Query: 704   tggaaaatg 712
             |||||||||
Sbjct: 88670 tggaaaatg 88678



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                         
Query: 395   aaaattaaaagggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttc 454
             |||||| || |||||||||||   ||||||||||||||| |||||||| ||||||||  |
Sbjct: 87982 aaaattgaaggggtgattgtatgcgcaagctggcccaaatttgcagaccccatagcgacc 88041

                                     
Query: 455   atagtatgtgcacatgggctgatc 478
             ||||||||||||||  ||||||||
Sbjct: 88042 atagtatgtgcacacaggctgatc 88065

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>gb|AY109216.1| Zea mays PCO122680 mRNA sequence
          Length = 1155

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 243/309 (78%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 405 gggtgattgtacatgcaagctggcccaaacttgcagactccatagcgttcatagtatgtg 464
           ||||| ||| ||||||| ||||||||| |||||||||  ||||||||| ||||||| |||
Sbjct: 858 gggtggttgaacatgcaggctggcccatacttgcagaagccatagcgtccatagtaagtg 799

                                                                       
Query: 465 cacatgggctgatcaggtctgagtggcaagccgagaggactaagagct-ctggctgttgg 523
           ||||  || ||||||||| |||  ||||||||||  || |||||| || |||| || |||
Sbjct: 798 cacacaggttgatcaggtttgataggcaagccgatggggctaagacctgctgg-tggtgg 740

                                                                       
Query: 524 tggaggcacaagtgaccttggatggtggtacttgcacttgaccttgaatttacaaaaccc 583
           || || |    | |||||||||||||| ||  |||| || | | || ||||||| || ||
Sbjct: 739 tgcagactggcgcgaccttggatggtgatatctgcatttcatcctgtatttacagaaacc 680

                                                                       
Query: 584 acttttaacaaaatgttgacattcaggctcgccaggtctctctgggtattcatcggaggg 643
            || ||||| ||||| || |||||||| | |||||||||||| || || ||||| || ||
Sbjct: 679 gctcttaacgaaatgctggcattcaggttggccaggtctctcgggatactcatcagatgg 620

                                                                       
Query: 644 cagttcttgatgtccctgtacatctgctnccctgtacataggatgattcacaggaggagc 703
             ||  |||||||||  ||| ||||||  || ||||||| || ||||||| | | | |||
Sbjct: 619 tggtggttgatgtcctggtatatctgcagccttgtacatcgggtgattcatatgggcagc 560

                    
Query: 704 tggaaaatg 712
           |||||||||
Sbjct: 559 tggaaaatg 551

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>gb|BT020443.1| Arabidopsis thaliana At5g63260 mRNA, complete cds
          Length = 1308

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 456  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 496
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1166 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1126

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>ref|NM_125721.2| Arabidopsis thaliana nucleic acid binding AT5G63260 mRNA, complete
            cds
          Length = 1719

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 456  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 496
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1316 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1276

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>gb|BT020223.1| Arabidopsis thaliana At5g63260 mRNA, complete cds
          Length = 1507

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 456  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 496
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1236 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1196

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>emb|BX829663.1|CNS09ZXX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB28ZD08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1592

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 456  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 496
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1223 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1183

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>emb|BX831419.1|CNS09ZG2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS88ZF11 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1546

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 456  tagtatgtgcacatgggctgatcaggtctgagtggcaagcc 496
            |||| ||||||||||  |||||||||||| || ||||||||
Sbjct: 1259 tagtgtgtgcacatgctctgatcaggtcttaggggcaagcc 1219

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>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence
          Length = 188353

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 258   tattttacaagtagaagttat 278
             |||||||||||||||||||||
Sbjct: 82357 tattttacaagtagaagttat 82337

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 507    agagctctggctgttggtgga 527
              |||||||||||||||||||||
Sbjct: 650408 agagctctggctgttggtgga 650428

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>gb|AC003119.1|HUAC003119 Human Chromosome 16 BAC clone CIT987SK-27D10, complete sequence
          Length = 88036

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gcaatgatgtatccaagcct 141
             ||||||||||||||||||||
Sbjct: 50297 gcaatgatgtatccaagcct 50278

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>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
          Length = 129008

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   ttaacaaaatgttgacattc 607
             ||||||||||||||||||||
Sbjct: 51832 ttaacaaaatgttgacattc 51851

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>gb|AC149080.14| Medicago truncatula clone mth2-75j5, complete sequence
          Length = 96907

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   ttaacaaaatgttgacattc 607
             ||||||||||||||||||||
Sbjct: 19208 ttaacaaaatgttgacattc 19189

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>emb|BX901976.22| Zebrafish DNA sequence from clone DKEY-101P20 in linkage group 22,
             complete sequence
          Length = 201928

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   caagcctgtttagtttctat 154
             ||||||||||||||||||||
Sbjct: 89818 caagcctgtttagtttctat 89837

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>gb|AC073359.12| Homo sapiens 3 BAC RP11-439C8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178336

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    tggatggccaaaattaaaag 405
              ||||||||||||||||||||
Sbjct: 121882 tggatggccaaaattaaaag 121901

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>emb|BX324146.10| Zebrafish DNA sequence from clone CH211-207C15 in linkage group 19,
             complete sequence
          Length = 230267

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   taacaaaatgttgacattca 608
             ||||||||||||||||||||
Sbjct: 70939 taacaaaatgttgacattca 70958

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>gb|AC011912.7|AC011912 Homo sapiens chromosome 15 clone RP11-547D13 map 15q21.3, complete
              sequence
          Length = 175264

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 587    tttaacaaaatgttgacattcagg 610
              |||||||||||||| |||||||||
Sbjct: 111781 tttaacaaaatgttaacattcagg 111804

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     tcaacatgaaaaccctgcaa 244
               ||||||||||||||||||||
Sbjct: 7121482 tcaacatgaaaaccctgcaa 7121463

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>emb|AL805896.12| Mouse DNA sequence from clone RP23-402I8 on chromosome 4, complete
             sequence
          Length = 210141

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 562   tgaccttgaatttacaaaacccac 585
             |||||||||||||| |||||||||
Sbjct: 49386 tgaccttgaatttataaaacccac 49409

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>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0485D09
          Length = 150594

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tcaacatgaaaaccctgcaa 244
             ||||||||||||||||||||
Sbjct: 16130 tcaacatgaaaaccctgcaa 16111

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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0452F10
          Length = 145120

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    tcaacatgaaaaccctgcaa 244
              ||||||||||||||||||||
Sbjct: 109062 tcaacatgaaaaccctgcaa 109043

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>gb|AC073895.22| Homo sapiens 3 BAC RP11-622L21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167311

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 196   ttgctgacttgcaaaccaaacccc 219
             |||||| |||||||||||||||||
Sbjct: 67502 ttgctgtcttgcaaaccaaacccc 67479

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>emb|AL953841.5| Zebrafish DNA sequence from clone DKEY-44G23 in linkage group 22,
              complete sequence
          Length = 219929

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    caagcctgtttagtttctat 154
              ||||||||||||||||||||
Sbjct: 132456 caagcctgtttagtttctat 132475

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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     acttgcaaaccaaaccccta 221
               ||||||||||||||||||||
Sbjct: 1513131 acttgcaaaccaaaccccta 1513112

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>emb|BX001053.7| Mouse DNA sequence from clone RP23-199B9 on chromosome 4, complete
             sequence
          Length = 111777

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ggatggccaaaattaaaagg 406
             ||||||||||||||||||||
Sbjct: 92610 ggatggccaaaattaaaagg 92591

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>emb|AL772276.15| Mouse DNA sequence from clone RP23-335F19 on chromosome 4, complete
              sequence
          Length = 192682

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    aaaattaaaagggtgattgt 414
              ||||||||||||||||||||
Sbjct: 182552 aaaattaaaagggtgattgt 182533

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>gb|AC140929.4| Mus musculus BAC clone RP23-258I3 from 8, complete sequence
          Length = 221905

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    aagtagaagttattccaagc 285
              ||||||||||||||||||||
Sbjct: 182602 aagtagaagttattccaagc 182621

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>emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chromosome X, complete
              sequence
          Length = 183256

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    acaaaacccacttttaacaa 594
              ||||||||||||||||||||
Sbjct: 164536 acaaaacccacttttaacaa 164555

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>emb|AL732402.5| Mouse DNA sequence from clone RP23-402I13 on chromosome 11, complete
             sequence
          Length = 103449

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    catgcatgatagatgaaaaagtgg 63
             ||||||||||||||||||| ||||
Sbjct: 87100 catgcatgatagatgaaaatgtgg 87077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,196,406
Number of Sequences: 3902068
Number of extensions: 6196406
Number of successful extensions: 131885
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131641
Number of HSP's gapped (non-prelim): 243
length of query: 718
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 695
effective length of database: 17,143,297,704
effective search space: 11914591904280
effective search space used: 11914591904280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result