ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20m24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY336990.1| Oryza sativa (japonica cultivar-group) CUL1 mRNA,... 280 5e-72
2dbj|AK104340.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
3dbj|AK064940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 5e-72
4ref|NM_193822.1| Oryza sativa (japonica cultivar-group), predic... 278 2e-71
5dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
6gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 1... 170 4e-39
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
8dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
9dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
10emb|AJ344535.1|NTA344535 Nicotiana tabacum partial mRNA for cull... 149 1e-32
11gb|AY106256.1| Zea mays PCO138766 mRNA sequence 131 3e-27
12dbj|AK073947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
13dbj|AK061409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
14gb|BT013673.1| Lycopersicon esculentum clone 132492F, mRNA sequence 123 7e-25
15dbj|AB080190.1| Pisum sativum cul1 mRNA for cullin-like protein1... 103 7e-19
16ref|NM_116491.2| Arabidopsis thaliana ATCUL1 (CULLIN 1) AT4G0257... 86 2e-13
17ref|NM_001036498.1| Arabidopsis thaliana ATCUL1 (CULLIN 1) AT4G0... 86 2e-13
18ref|NM_001036499.1| Arabidopsis thaliana ATCUL1 (CULLIN 1) AT4G0... 86 2e-13
19gb|AY133878.1| Arabidopsis thaliana clone U09998 putative cullin... 86 2e-13
20gb|AY046030.1| Arabidopsis thaliana putative cullin 1 protein (A... 86 2e-13
21emb|AJ318017.1|ATH318017 Arabidopsis thaliana mRNA for cullin 1 ... 86 2e-13
22dbj|AK222216.1| Arabidopsis thaliana mRNA for putative cullin-li... 86 2e-13
23emb|AJ344533.1|NTA344533 Nicotiana tabacum mRNA for cullin 1A (c... 82 3e-12
24emb|AJ344534.1|NTA344534 Nicotiana tabacum mRNA for cullin 1B (c... 80 1e-11
25gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome... 76 2e-10
26gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 76 2e-10
27dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
28gb|AC146552.16| Medicago truncatula clone mth2-9d1, complete seq... 70 1e-08
29gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome I... 64 6e-07
30emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c... 64 6e-07
31ref|NM_193824.1| Oryza sativa (japonica cultivar-group), predic... 58 4e-05
32dbj|AK073477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
33dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
34ref|NM_100179.2| Arabidopsis thaliana CUL2 AT1G02980 (CUL2) mRNA... 46 0.14
35gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 geno... 46 0.14
36gb|BT006231.1| Arabidopsis thaliana At1g02980 gene, complete cds 46 0.14
37dbj|AK117909.1| Arabidopsis thaliana At1g02980 mRNA for unknown ... 46 0.14
38ref|NM_113297.2| Arabidopsis thaliana beta-amylase AT3G23920 mRN... 44 0.55
39gb|AY096517.1| Arabidopsis thaliana putative beta-amylase (At3g2... 44 0.55
40gb|AY074393.1| Arabidopsis thaliana putative beta-amylase (At3g2... 44 0.55
41gb|AY078046.1| Arabidopsis thaliana AT3g23920/F14O13_11 mRNA, co... 44 0.55
42gb|AF319168.1|AF319168 Brassica napus putative chloroplast-targe... 44 0.55
43gb|AF367293.1|AF367293 Arabidopsis thaliana AT3g23920/F14O13_11 ... 44 0.55
44emb|BX823311.1|CNS0A4RM Arabidopsis thaliana Full-length cDNA Co... 44 0.55
45dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.55
46gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 42 2.2
47ref|NM_183784.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
48gb|AC110719.7| Homo sapiens 3 BAC RP11-709N4 (Roswell Park Cance... 42 2.2
49gb|AC022724.8| Homo sapiens chromosome 18, clone RP11-275K5, com... 42 2.2
50dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
51dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
52gb|AC153877.5| Mus musculus 6 BAC RP23-258E21 (Roswell Park Canc... 42 2.2
53gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Canc... 42 2.2
54gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
55emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.2
56ref|NM_123990.2| Arabidopsis thaliana CUL4 AT5G46210 (CUL4) mRNA... 40 8.6
57gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, comp... 40 8.6
58gb|AY091113.1| Arabidopsis thaliana putative cullin (At5g46210) ... 40 8.6
59gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-... 40 8.6
60ref|NM_001011142.1| Xenopus tropicalis UDP-N-acetylglucosamine p... 40 8.6
61emb|AJ318018.1|ATH318018 Arabidopsis thaliana mRNA for cullin 4 ... 40 8.6
62gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, compl... 40 8.6
63gb|AC097360.2| Homo sapiens chromosome 3 clone RP11-344C13, comp... 40 8.6
64gb|AC007849.24| Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cance... 40 8.6
65gb|AE004731.1| Pseudomonas aeruginosa PAO1, section 292 of 529 o... 40 8.6
66gb|AY084267.1| Arabidopsis thaliana clone 101723 mRNA, complete ... 40 8.6
67gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 40 8.6
68dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 8.6
69dbj|AB025620.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.6
70emb|CR848106.2| Xenopus tropicalis finished cDNA, clone TGas117b20 40 8.6
71gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, co... 40 8.6
72gb|BC084497.1| Xenopus tropicalis UDP-N-acetylglucosamine pyroph... 40 8.6
73emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chro... 40 8.6 
>gb|AY336990.1| Oryza sativa (japonica cultivar-group) CUL1 mRNA, complete cds
          Length = 2478

 Score =  280 bits (141), Expect = 5e-72
 Identities = 225/253 (88%)
 Strand = Plus / Minus

                                                                        
Query: 381  atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
            ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 2320 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 2261

                                                                        
Query: 441  ttataagatcctcaatgcgcttctttattgctttgaagtcaggcttgaacatgcgaccaa 500
            | |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 2260 tgataagatcctcaattcgcttctttattgccttgaagtcaggcttaaacatgcgtccaa 2201

                                                                        
Query: 501  gctgctccacacactccattactagtgtctggtgacccaagactttgcggctcttcataa 560
            ||||||||||||| ||||| || |||  ||| |||||||| |||||||| ||||||||||
Sbjct: 2200 gctgctccacacattccatcacaagttgctgatgacccaatactttgcgactcttcataa 2141

                                                                        
Query: 561  tacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatcttcaacaacct 620
            |||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 2140 tacgcacaattgatgcatcaattgcgtatctgcgatccttatcaacatcttcaactactt 2081

                         
Query: 621  tctttttctcatc 633
            |||| ||||||||
Sbjct: 2080 tcttcttctcatc 2068
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>dbj|AK104340.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-G02, full
            insert sequence
          Length = 2950

 Score =  280 bits (141), Expect = 5e-72
 Identities = 225/253 (88%)
 Strand = Plus / Minus

                                                                        
Query: 381  atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
            ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 2377 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 2318

                                                                        
Query: 441  ttataagatcctcaatgcgcttctttattgctttgaagtcaggcttgaacatgcgaccaa 500
            | |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 2317 tgataagatcctcaattcgcttctttattgccttgaagtcaggcttaaacatgcgtccaa 2258

                                                                        
Query: 501  gctgctccacacactccattactagtgtctggtgacccaagactttgcggctcttcataa 560
            ||||||||||||| ||||| || |||  ||| |||||||| |||||||| ||||||||||
Sbjct: 2257 gctgctccacacattccatcacaagttgctgatgacccaatactttgcgactcttcataa 2198

                                                                        
Query: 561  tacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatcttcaacaacct 620
            |||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 2197 tacgcacaattgatgcatcaattgcgtatctgcgatccttatcaacatcttcaactactt 2138

                         
Query: 621  tctttttctcatc 633
            |||| ||||||||
Sbjct: 2137 tcttcttctcatc 2125
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>dbj|AK064940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P07, full
            insert sequence
          Length = 3029

 Score =  280 bits (141), Expect = 5e-72
 Identities = 225/253 (88%)
 Strand = Plus / Minus

                                                                        
Query: 381  atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
            ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 2429 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 2370

                                                                        
Query: 441  ttataagatcctcaatgcgcttctttattgctttgaagtcaggcttgaacatgcgaccaa 500
            | |||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 2369 tgataagatcctcaattcgcttctttattgccttgaagtcaggcttaaacatgcgtccaa 2310

                                                                        
Query: 501  gctgctccacacactccattactagtgtctggtgacccaagactttgcggctcttcataa 560
            ||||||||||||| ||||| || |||  ||| |||||||| |||||||| ||||||||||
Sbjct: 2309 gctgctccacacattccatcacaagttgctgatgacccaatactttgcgactcttcataa 2250

                                                                        
Query: 561  tacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatcttcaacaacct 620
            |||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct: 2249 tacgcacaattgatgcatcaattgcgtatctgcgatccttatcaacatcttcaactactt 2190

                         
Query: 621  tctttttctcatc 633
            |||| ||||||||
Sbjct: 2189 tcttcttctcatc 2177
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>ref|NM_193822.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2199

 Score =  278 bits (140), Expect = 2e-71
 Identities = 224/252 (88%)
 Strand = Plus / Minus

                                                                        
Query: 382  tcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctggt 441
            |||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| ||
Sbjct: 2199 tcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttgt 2140

                                                                        
Query: 442  tataagatcctcaatgcgcttctttattgctttgaagtcaggcttgaacatgcgaccaag 501
             |||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 2139 gataagatcctcaattcgcttctttattgccttgaagtcaggcttaaacatgcgtccaag 2080

                                                                        
Query: 502  ctgctccacacactccattactagtgtctggtgacccaagactttgcggctcttcataat 561
            |||||||||||| ||||| || |||  ||| |||||||| |||||||| |||||||||||
Sbjct: 2079 ctgctccacacattccatcacaagttgctgatgacccaatactttgcgactcttcataat 2020

                                                                        
Query: 562  acgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatcttcaacaacctt 621
            ||| |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||
Sbjct: 2019 acgcacaattgatgcatcaattgcgtatctgcgatccttatcaacatcttcaactacttt 1960

                        
Query: 622  ctttttctcatc 633
            ||| ||||||||
Sbjct: 1959 cttcttctcatc 1948
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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0560B06
          Length = 161720

 Score =  170 bits (86), Expect = 4e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                          
Query: 488    aacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagactttg 547
              |||||||| ||||||||||||||||| ||||| || |||  ||| |||||||| ||||||
Sbjct: 130006 aacatgcgtccaagctgctccacacattccatcacaagttgctgatgacccaatactttg 130065

                                                                          
Query: 548    cggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaaca 607
              || |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 130066 cgactcttcataatacgcacaattgatgcatcaattgcgtatctgcgatccttatcaaca 130125

                                        
Query: 608    tcttcaacaaccttctttttctcatc 633
              |||||||| || ||||| ||||||||
Sbjct: 130126 tcttcaactactttcttcttctcatc 130151



 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                          
Query: 381    atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
              ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 129530 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 129589

                                                           
Query: 441    ttataagatcctcaatgcgcttctttattgctttgaagtcaggct 485
              | |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 129590 tgataagatcctcaattcgcttctttattgccttgaagtcaggct 129634



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                          
Query: 542    actttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttg 601
              ||||||||||| ||||| || || ||||  ||||||||||||||| | || |  ||||||
Sbjct: 149689 actttgcggcttttcatgatgcgcacaagagatgcatcaattgcgaacctcctgtccttg 149630

                                              
Query: 602    tcaacatcttcaacaaccttctttttctcatc 633
              |  ||||| || |||||||| || ||||||||
Sbjct: 149629 ttgacatcatcgacaacctttttcttctcatc 149598
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>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete
             Sequence, complete sequence
          Length = 105198

 Score =  170 bits (86), Expect = 4e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                         
Query: 488   aacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagactttg 547
             |||||||| ||||||||||||||||| ||||| || |||  ||| |||||||| ||||||
Sbjct: 67615 aacatgcgtccaagctgctccacacattccatcacaagttgctgatgacccaatactttg 67674

                                                                         
Query: 548   cggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaaca 607
             || |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 67675 cgactcttcataatacgcacaattgatgcatcaattgcgtatctgcgatccttatcaaca 67734

                                       
Query: 608   tcttcaacaaccttctttttctcatc 633
             |||||||| || ||||| ||||||||
Sbjct: 67735 tcttcaactactttcttcttctcatc 67760



 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                         
Query: 381   atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
             ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 67139 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 67198

                                                          
Query: 441   ttataagatcctcaatgcgcttctttattgctttgaagtcaggct 485
             | |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 67199 tgataagatcctcaattcgcttctttattgccttgaagtcaggct 67243



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                         
Query: 542   actttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttg 601
             ||||||||||| ||||| || || ||||  ||||||||||||||| | || |  ||||||
Sbjct: 87299 actttgcggcttttcatgatgcgcacaagagatgcatcaattgcgaacctcctgtccttg 87240

                                             
Query: 602   tcaacatcttcaacaaccttctttttctcatc 633
             |  ||||| || |||||||| || ||||||||
Sbjct: 87239 ttgacatcatcgacaacctttttcttctcatc 87208
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  170 bits (86), Expect = 4e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                            
Query: 488      aacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagactttg 547
                |||||||| ||||||||||||||||| ||||| || |||  ||| |||||||| ||||||
Sbjct: 15113954 aacatgcgtccaagctgctccacacattccatcacaagttgctgatgacccaatactttg 15114013

                                                                            
Query: 548      cggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaaca 607
                || |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 15114014 cgactcttcataatacgcacaattgatgcatcaattgcgtatctgcgatccttatcaaca 15114073

                                          
Query: 608      tcttcaacaaccttctttttctcatc 633
                |||||||| || ||||| ||||||||
Sbjct: 15114074 tcttcaactactttcttcttctcatc 15114099



 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                            
Query: 381      atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
                ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 15113478 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 15113537

                                                             
Query: 441      ttataagatcctcaatgcgcttctttattgctttgaagtcaggct 485
                | |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 15113538 tgataagatcctcaattcgcttctttattgccttgaagtcaggct 15113582



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                            
Query: 542      actttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttg 601
                ||||||||||| ||||| || || ||||  ||||||||||||||| | || |  ||||||
Sbjct: 15133637 actttgcggcttttcatgatgcgcacaagagatgcatcaattgcgaacctcctgtccttg 15133578

                                                
Query: 602      tcaacatcttcaacaaccttctttttctcatc 633
                |  ||||| || |||||||| || ||||||||
Sbjct: 15133577 ttgacatcatcgacaacctttttcttctcatc 15133546



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 612      caacaaccttctttttctcat 632
                |||||||||||||||||||||
Sbjct: 12275012 caacaaccttctttttctcat 12275032
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>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1329D01
          Length = 141938

 Score =  170 bits (86), Expect = 4e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                          
Query: 488    aacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagactttg 547
              |||||||| ||||||||||||||||| ||||| || |||  ||| |||||||| ||||||
Sbjct: 140201 aacatgcgtccaagctgctccacacattccatcacaagttgctgatgacccaatactttg 140260

                                                                          
Query: 548    cggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaaca 607
              || |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 140261 cgactcttcataatacgcacaattgatgcatcaattgcgtatctgcgatccttatcaaca 140320

                                        
Query: 608    tcttcaacaaccttctttttctcatc 633
              |||||||| || ||||| ||||||||
Sbjct: 140321 tcttcaactactttcttcttctcatc 140346



 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                          
Query: 381    atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
              ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 139725 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 139784

                                                           
Query: 441    ttataagatcctcaatgcgcttctttattgctttgaagtcaggct 485
              | |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 139785 tgataagatcctcaattcgcttctttattgccttgaagtcaggct 139829
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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0043B10
          Length = 167399

 Score =  170 bits (86), Expect = 4e-39
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                         
Query: 488   aacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagactttg 547
             |||||||| ||||||||||||||||| ||||| || |||  ||| |||||||| ||||||
Sbjct: 85920 aacatgcgtccaagctgctccacacattccatcacaagttgctgatgacccaatactttg 85979

                                                                         
Query: 548   cggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaaca 607
             || |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 85980 cgactcttcataatacgcacaattgatgcatcaattgcgtatctgcgatccttatcaaca 86039

                                       
Query: 608   tcttcaacaaccttctttttctcatc 633
             |||||||| || ||||| ||||||||
Sbjct: 86040 tcttcaactactttcttcttctcatc 86065



 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                         
Query: 381   atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccctgg 440
             ||||||||||||||| ||| || || ||||| || || |||||||||| ||||||||| |
Sbjct: 85444 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatcccttg 85503

                                                          
Query: 441   ttataagatcctcaatgcgcttctttattgctttgaagtcaggct 485
             | |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 85504 tgataagatcctcaattcgcttctttattgccttgaagtcaggct 85548



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                          
Query: 542    actttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttg 601
              ||||||||||| ||||| || || ||||  ||||||||||||||| | || |  ||||||
Sbjct: 105603 actttgcggcttttcatgatgcgcacaagagatgcatcaattgcgaacctcctgtccttg 105544

                                              
Query: 602    tcaacatcttcaacaaccttctttttctcatc 633
              |  ||||| || |||||||| || ||||||||
Sbjct: 105543 ttgacatcatcgacaacctttttcttctcatc 105512
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>emb|AJ344535.1|NTA344535 Nicotiana tabacum partial mRNA for cullin 1C (cul1C gene)
          Length = 1833

 Score =  149 bits (75), Expect = 1e-32
 Identities = 192/231 (83%)
 Strand = Plus / Minus

                                                                        
Query: 403  gttcgggttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgctt 462
            ||||||||| || ||||| ||||| |||||||| || ||||| | ||| ||||| | |||
Sbjct: 1325 gttcgggttatctttgtctctctctaggtaatctctagttatcaaatcttcaattctctt 1266

                                                                        
Query: 463  ctttattgctttgaagtcaggcttgaacatgcgaccaagctgctccacacactccattac 522
            ||| || ||||||| |||||||||||||||||| || | |||||| ||||||||||| ||
Sbjct: 1265 cttgatagctttgacgtcaggcttgaacatgcgtcccaactgctcaacacactccatgac 1206

                                                                        
Query: 523  tagtgtctggtgacccaagactttgcggctcttcataatacgaacaattgatgcatcaat 582
            ||||  |||||  ||||| ||||| || |||||||||||||| |||||||| ||||| ||
Sbjct: 1205 tagttgctggtagcccaatactttacgactcttcataatacgcacaattgaagcatctat 1146

                                                               
Query: 583  tgcgtatcttcgatccttgtcaacatcttcaacaaccttctttttctcatc 633
             || || |  | ||||||||||||||||||||  ||||| || ||||||||
Sbjct: 1145 agcataccgcctatccttgtcaacatcttcaattacctttttcttctcatc 1095
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>gb|AY106256.1| Zea mays PCO138766 mRNA sequence
          Length = 1503

 Score =  131 bits (66), Expect = 3e-27
 Identities = 185/222 (83%), Gaps = 2/222 (0%)
 Strand = Plus / Minus

                                                                        
Query: 413  tccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttattgct 472
            |||||||| | |||||  || ||||| || || ||||||||||| | ||||||||| |||
Sbjct: 1073 tccttgtcgcgctccaaatagtcccttgtgatgagatcctcaatcctcttctttatggct 1014

                                                                        
Query: 473  ttgaagtcaggcttgaacatgcgaccaagctgctccacacactccattactag-tgtctg 531
            |||||||| ||||| |||||||| | ||||||||| ||||| ||    || || ||| ||
Sbjct: 1013 ttgaagtccggcttaaacatgcggctaagctgctcaacacattcagcaaccagctgt-tg 955

                                                                        
Query: 532  gtgacccaagactttgcggctcttcataatacgaacaattgatgcatcaattgcgtatct 591
             |||||||  |||||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct: 954  atgacccataactttgcggctcttcataatgcgcacaattgatgcatcaattgcatacct 895

                                                      
Query: 592  tcgatccttgtcaacatcttcaacaaccttctttttctcatc 633
             |  || ||||||||||||||||||||||| || ||||||||
Sbjct: 894  cctgtctttgtcaacatcttcaacaacctttttcttctcatc 853
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>dbj|AK073947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073A13, full
            insert sequence
          Length = 2869

 Score =  129 bits (65), Expect = 1e-26
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                        
Query: 425  tccaggtaatccctggttataagatcctcaatgcgcttctttattgctttgaagtcaggc 484
            |||||||||||||| || || || ||||| || |||||||| || |||||||||||||||
Sbjct: 2418 tccaggtaatcccttgtgatgaggtcctcgattcgcttcttgatggctttgaagtcaggc 2359

                                                                        
Query: 485  ttgaacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagact 544
            ||||||||||| |  |||||||||||||| |||   |||||   ||| || ||||  |||
Sbjct: 2358 ttgaacatgcggctgagctgctccacacattccgcaactagctgctgatggcccataact 2299

                                                                        
Query: 545  ttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtca 604
            ||||| ||||||||||| || ||||| |||||||||||||| || |  |  |||||||||
Sbjct: 2298 ttgcgactcttcataatgcgcacaatcgatgcatcaattgcataccgcctgtccttgtca 2239

                             
Query: 605  acatcttcaacaacctt 621
            |||||||| ||||||||
Sbjct: 2238 acatcttcgacaacctt 2222
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>dbj|AK061409.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B07, full
           insert sequence
          Length = 1189

 Score =  129 bits (65), Expect = 1e-26
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                       
Query: 425 tccaggtaatccctggttataagatcctcaatgcgcttctttattgctttgaagtcaggc 484
           |||||||||||||| || || || ||||| || |||||||| || |||||||||||||||
Sbjct: 738 tccaggtaatcccttgtgatgaggtcctcgattcgcttcttgatggctttgaagtcaggc 679

                                                                       
Query: 485 ttgaacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagact 544
           ||||||||||| |  |||||||||||||| |||   |||||   ||| || ||||  |||
Sbjct: 678 ttgaacatgcggctgagctgctccacacattccgcaactagctgctgatggcccataact 619

                                                                       
Query: 545 ttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtca 604
           ||||| ||||||||||| || ||||| |||||||||||||| || |  |  |||||||||
Sbjct: 618 ttgcgactcttcataatgcgcacaatcgatgcatcaattgcataccgcctgtccttgtca 559

                            
Query: 605 acatcttcaacaacctt 621
           |||||||| ||||||||
Sbjct: 558 acatcttcgacaacctt 542
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>gb|BT013673.1| Lycopersicon esculentum clone 132492F, mRNA sequence
          Length = 2887

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 416  ttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttattgctttg 475
            ||||||||||| |||||||| || ||||| | ||| || || | |||||| || ||||||
Sbjct: 2376 ttgtccctctctaggtaatctctagttatcaaatcttcgattctcttcttgatagctttg 2317

                                                                        
Query: 476  aagtcaggcttgaacatgcgaccaagctgctccacacactccattactagtgtctggtga 535
            |  ||||||||||||||||| || | |||||| || |||||||| ||||||  |||||  
Sbjct: 2316 acatcaggcttgaacatgcgccccaactgctcaacgcactccatgactagttgctggtag 2257

                                                                        
Query: 536  cccaagactttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcga 595
            ||||| ||||| ||||||||||||||||| |||||||| ||||| || || || |  | |
Sbjct: 2256 cccaatactttacggctcttcataatacgcacaattgaagcatctatagcataccgccta 2197

                                                  
Query: 596  tccttgtcaacatcttcaacaaccttctttttctcatc 633
            ||||||||||| |||||||  ||||| || ||||||||
Sbjct: 2196 tccttgtcaacgtcttcaattacctttttcttctcatc 2159
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>dbj|AB080190.1| Pisum sativum cul1 mRNA for cullin-like protein1, complete cds
          Length = 2724

 Score =  103 bits (52), Expect = 7e-19
 Identities = 138/164 (84%), Gaps = 2/164 (1%)
 Strand = Plus / Minus

                                                                        
Query: 452  tcaatgcgcttctttattgctttgaagtcaggcttgaacatgcgaccaagctgctccaca 511
            ||||| |||||||| ||||| ||||  || ||||| |||||||| || | ||||||||| 
Sbjct: 2387 tcaatacgcttcttaattgccttgacatcgggcttaaacatgcggcctaactgctccacg 2328

                                                                        
Query: 512  cactccattactag-tgtctggtgacccaagactttgcggctcttcataatacgaacaat 570
            |||||||| ||||  ||| |||| || ||| ||||| || ||||||||||||||||||||
Sbjct: 2327 cactccataactaactgt-tggtaactcaaaactttccgactcttcataatacgaacaat 2269

                                                        
Query: 571  tgatgcatcaattgcgtatcttcgatccttgtcaacatcttcaa 614
            ||| |||||||| || |||||||  |||||||||||||| ||||
Sbjct: 2268 tgaggcatcaatagcatatcttctgtccttgtcaacatcctcaa 2225
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>ref|NM_116491.2| Arabidopsis thaliana ATCUL1 (CULLIN 1) AT4G02570 (ATCUL1) transcript
            variant AT4G02570.1 mRNA, complete cds
          Length = 2747

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
            |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 2458 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 2399

                                                           
Query: 470  gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
            |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 2398 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 2352
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>ref|NM_001036498.1| Arabidopsis thaliana ATCUL1 (CULLIN 1) AT4G02570 (ATCUL1) transcript
            variant AT4G02570.2 mRNA, complete cds
          Length = 2655

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
            |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 2366 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 2307

                                                           
Query: 470  gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
            |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 2306 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 2260
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>ref|NM_001036499.1| Arabidopsis thaliana ATCUL1 (CULLIN 1) AT4G02570 (ATCUL1) transcript
            variant AT4G02570.3 mRNA, complete cds
          Length = 2653

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
            |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 2364 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 2305

                                                           
Query: 470  gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
            |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 2304 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 2258
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>gb|AY133878.1| Arabidopsis thaliana clone U09998 putative cullin 1 protein
            (AT4g02570) mRNA, complete cds
          Length = 2248

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
            |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 2189 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 2130

                                                           
Query: 470  gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
            |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 2129 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 2083
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>gb|AY046030.1| Arabidopsis thaliana putative cullin 1 protein (At4g02570) mRNA,
            complete cds
          Length = 2748

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
            |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 2445 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 2386

                                                           
Query: 470  gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
            |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 2385 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 2339
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>emb|AJ318017.1|ATH318017 Arabidopsis thaliana mRNA for cullin 1 (cul1 gene)
          Length = 2456

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 410  ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
            |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 2223 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 2164

                                                           
Query: 470  gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
            |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 2163 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 2117
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>dbj|AK222216.1| Arabidopsis thaliana mRNA for putative cullin-like 1 protein,
           partial cds, clone: RAFL25-25-H19
          Length = 979

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                       
Query: 410 ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
           |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 721 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 662

                                                          
Query: 470 gctttgaagtcaggcttgaacatgcgaccaagctgctccacacactc 516
           |||||||  |||||||||||||| || | ||| ||||| ||||||||
Sbjct: 661 gctttgatatcaggcttgaacattcggctaagttgctcaacacactc 615
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>emb|AJ344533.1|NTA344533 Nicotiana tabacum mRNA for cullin 1A (cul1A gene)
          Length = 2693

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 407  gggttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttcttt 466
            |||||||| |||||||| |||| ||| |||| ||| |||||||| ||||| ||||| || 
Sbjct: 2342 gggttctctttgtccctttccaagtagtcccgggtgataagatcttcaatccgctttttg 2283

                                         
Query: 467  attgctttgaagtcaggcttgaacatgcg 495
            ||||||||||| |||||||| ||||||||
Sbjct: 2282 attgctttgaaatcaggcttaaacatgcg 2254
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>emb|AJ344534.1|NTA344534 Nicotiana tabacum mRNA for cullin 1B (cul1B gene)
          Length = 2758

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 403  gttcgggttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgctt 462
            |||||||||||| ||||| || |||| ||||||||  || |||||||| ||||| |||||
Sbjct: 2433 gttcgggttctctttgtctctttccaagtaatcccgagtgataagatcttcaattcgctt 2374

                                                                    
Query: 463  ctttattgctttgaagtcaggcttgaacatgcgaccaagctgctccacacactcca 518
             || ||||||||||| |||||||| ||||| || |  | |||||| ||||||||||
Sbjct: 2373 tttgattgctttgaaatcaggcttaaacattcggctcaactgctcaacacactcca 2318
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>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04,
             complete sequence
          Length = 88812

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 113/138 (81%)
 Strand = Plus / Plus

                                                                         
Query: 484   cttgaacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagac 543
             |||||||||||| |  |||||||||||||| |||   |||||   ||| || ||||  ||
Sbjct: 52934 cttgaacatgcggctgagctgctccacacattccgcaactagctgctgatggcccataac 52993

                                                                         
Query: 544   tttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtc 603
             |||||| ||||||||||| || ||||| |||||||||||||| || |  |  ||||||||
Sbjct: 52994 tttgcgactcttcataatgcgcacaatcgatgcatcaattgcataccgcctgtccttgtc 53053

                               
Query: 604   aacatcttcaacaacctt 621
             ||||||||| ||||||||
Sbjct: 53054 aacatcttcgacaacctt 53071



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 425   tccaggtaatccctggttataagatcctcaatgcgcttctttattgctttgaagtcaggc 484
             |||||||||||||| || || || ||||| || |||||||| || |||||||||||||||
Sbjct: 52586 tccaggtaatcccttgtgatgaggtcctcgattcgcttcttgatggctttgaagtcaggc 52645

              
Query: 485   t 485
             |
Sbjct: 52646 t 52646
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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 113/138 (81%)
 Strand = Plus / Minus

                                                                         
Query: 484   cttgaacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagac 543
             |||||||||||| |  |||||||||||||| |||   |||||   ||| || ||||  ||
Sbjct: 92964 cttgaacatgcggctgagctgctccacacattccgcaactagctgctgatggcccataac 92905

                                                                         
Query: 544   tttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtc 603
             |||||| ||||||||||| || ||||| |||||||||||||| || |  |  ||||||||
Sbjct: 92904 tttgcgactcttcataatgcgcacaatcgatgcatcaattgcataccgcctgtccttgtc 92845

                               
Query: 604   aacatcttcaacaacctt 621
             ||||||||| ||||||||
Sbjct: 92844 aacatcttcgacaacctt 92827



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 425   tccaggtaatccctggttataagatcctcaatgcgcttctttattgctttgaagtcaggc 484
             |||||||||||||| || || || ||||| || |||||||| || |||||||||||||||
Sbjct: 93312 tccaggtaatcccttgtgatgaggtcctcgattcgcttcttgatggctttgaagtcaggc 93253

              
Query: 485   t 485
             |
Sbjct: 93252 t 93252
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 113/138 (81%)
 Strand = Plus / Plus

                                                                           
Query: 484     cttgaacatgcgaccaagctgctccacacactccattactagtgtctggtgacccaagac 543
               |||||||||||| |  |||||||||||||| |||   |||||   ||| || ||||  ||
Sbjct: 2774608 cttgaacatgcggctgagctgctccacacattccgcaactagctgctgatggcccataac 2774667

                                                                           
Query: 544     tttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtc 603
               |||||| ||||||||||| || ||||| |||||||||||||| || |  |  ||||||||
Sbjct: 2774668 tttgcgactcttcataatgcgcacaatcgatgcatcaattgcataccgcctgtccttgtc 2774727

                                 
Query: 604     aacatcttcaacaacctt 621
               ||||||||| ||||||||
Sbjct: 2774728 aacatcttcgacaacctt 2774745



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                           
Query: 425     tccaggtaatccctggttataagatcctcaatgcgcttctttattgctttgaagtcaggc 484
               |||||||||||||| || || || ||||| || |||||||| || |||||||||||||||
Sbjct: 2774260 tccaggtaatcccttgtgatgaggtcctcgattcgcttcttgatggctttgaagtcaggc 2774319

                
Query: 485     t 485
               |
Sbjct: 2774320 t 2774320
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>gb|AC146552.16| Medicago truncatula clone mth2-9d1, complete sequence
          Length = 113088

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 536   cccaagactttgcggctcttcataatacgaacaattgatgcatcaattgcgtatcttcga 595
             ||||| ||||| || ||||||||||| || |||||||| |||||||| || |||||||  
Sbjct: 78799 cccaaaactttccgactcttcataatgcgtacaattgaggcatcaatggcatatcttctg 78858

                                
Query: 596   tccttgtcaacatcttcaa 614
             |||||||||||||| ||||
Sbjct: 78859 tccttgtcaacatcctcaa 78877
to top
>gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM,
             complete sequence
          Length = 113566

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                         
Query: 410   ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
             |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 77687 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 77746

                             
Query: 470   gctttgaagtcaggct 485
             |||||||  |||||||
Sbjct: 77747 gctttgatatcaggct 77762
to top
>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                          
Query: 410    ttctccttgtccctctccaggtaatccctggttataagatcctcaatgcgcttctttatt 469
              |||||||||||||||||||  ||||| |||||||| | |||||| || |||||||| || 
Sbjct: 169058 ttctccttgtccctctccaaataatctctggttattaaatcctccatacgcttcttgatc 168999

                              
Query: 470    gctttgaagtcaggct 485
              |||||||  |||||||
Sbjct: 168998 gctttgatatcaggct 168983
to top
>ref|NM_193824.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2241

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 128/161 (79%)
 Strand = Plus / Minus

                                                                        
Query: 473  ttgaagtcaggcttgaacatgcgaccaagctgctccacacactccattactagtgtctgg 532
            |||| ||||||||| |||||||| |  ||||||||||| || |||  ||| |||  ||| 
Sbjct: 2150 ttgatgtcaggcttaaacatgcggctgagctgctccacgcattccgctacaagttgctga 2091

                                                                        
Query: 533  tgacccaagactttgcggctcttcataatacgaacaattgatgcatcaattgcgtatctt 592
            || ||||  ||||||||||| ||||| || || ||||  ||||||||||||||| | || 
Sbjct: 2090 tggcccagaactttgcggcttttcatgatgcgcacaagagatgcatcaattgcgaacctc 2031

                                                     
Query: 593  cgatccttgtcaacatcttcaacaaccttctttttctcatc 633
            |  |||||||  ||||| || |||||||| || ||||||||
Sbjct: 2030 ctgtccttgttgacatcatcgacaacctttttcttctcatc 1990
to top
>dbj|AK073477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045D14, full
            insert sequence
          Length = 2634

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 128/161 (79%)
 Strand = Plus / Minus

                                                                        
Query: 473  ttgaagtcaggcttgaacatgcgaccaagctgctccacacactccattactagtgtctgg 532
            |||| ||||||||| |||||||| |  ||||||||||| || |||  ||| |||  ||| 
Sbjct: 2258 ttgatgtcaggcttaaacatgcggctgagctgctccacgcattccgctacaagttgctga 2199

                                                                        
Query: 533  tgacccaagactttgcggctcttcataatacgaacaattgatgcatcaattgcgtatctt 592
            || ||||  ||||||||||| ||||| || || ||||  ||||||||||||||| | || 
Sbjct: 2198 tggcccagaactttgcggcttttcatgatgcgcacaagagatgcatcaattgcgaacctc 2139

                                                     
Query: 593  cgatccttgtcaacatcttcaacaaccttctttttctcatc 633
            |  |||||||  ||||| || |||||||| || ||||||||
Sbjct: 2138 ctgtccttgttgacatcatcgacaacctttttcttctcatc 2098
to top
>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0784G04
          Length = 157458

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 381    atcaagccaagtatcggtagacgttcgggttctccttgtccctctccaggtaatccct 438
              ||||||||||||||| ||| || || ||||| || || |||||||||| |||||||||
Sbjct: 157393 atcaagccaagtatctgtacacatttgggttgtctttatccctctccaagtaatccct 157450
to top
>ref|NM_100179.2| Arabidopsis thaliana CUL2 AT1G02980 (CUL2) mRNA, complete cds
          Length = 2229

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 551  ctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatct 610
            |||||||| || |||||||  | |||||||||||| || | || ||| || |||||||||
Sbjct: 2060 ctcttcatgatccgaacaagagctgcatcaattgcatagcgtctatctttatcaacatct 2001

                   
Query: 611  tcaacaa 617
            |||||||
Sbjct: 2000 tcaacaa 1994
to top
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete
             sequence
          Length = 100239

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 551   ctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatct 610
             |||||||| || |||||||  | |||||||||||| || | || ||| || |||||||||
Sbjct: 11519 ctcttcatgatccgaacaagagctgcatcaattgcatagcgtctatctttatcaacatct 11578

                    
Query: 611   tcaacaa 617
             |||||||
Sbjct: 11579 tcaacaa 11585
to top
>gb|BT006231.1| Arabidopsis thaliana At1g02980 gene, complete cds
          Length = 807

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 551 ctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatct 610
           |||||||| || |||||||  | |||||||||||| || | || ||| || |||||||||
Sbjct: 638 ctcttcatgatccgaacaagagctgcatcaattgcatagcgtctatctttatcaacatct 579

                  
Query: 611 tcaacaa 617
           |||||||
Sbjct: 578 tcaacaa 572
to top
>dbj|AK117909.1| Arabidopsis thaliana At1g02980 mRNA for unknown protein, complete
           cds, clone: RAFL19-09-D14
          Length = 1081

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 551 ctcttcataatacgaacaattgatgcatcaattgcgtatcttcgatccttgtcaacatct 610
           |||||||| || |||||||  | |||||||||||| || | || ||| || |||||||||
Sbjct: 814 ctcttcatgatccgaacaagagctgcatcaattgcatagcgtctatctttatcaacatct 755

                  
Query: 611 tcaacaa 617
           |||||||
Sbjct: 754 tcaacaa 748
to top
>ref|NM_113297.2| Arabidopsis thaliana beta-amylase AT3G23920 mRNA, complete cds
          Length = 2131

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 790 gatccttgtcaacctcttcaacaacc 765
to top
>gb|AY096517.1| Arabidopsis thaliana putative beta-amylase (At3g23920) mRNA,
           complete cds
          Length = 1759

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 637 gatccttgtcaacctcttcaacaacc 612
to top
>gb|AY074393.1| Arabidopsis thaliana putative beta-amylase (At3g23920) mRNA,
           complete cds
          Length = 2081

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 737 gatccttgtcaacctcttcaacaacc 712
to top
>gb|AY078046.1| Arabidopsis thaliana AT3g23920/F14O13_11 mRNA, complete cds
          Length = 1728

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 637 gatccttgtcaacctcttcaacaacc 612
to top
>gb|AF319168.1|AF319168 Brassica napus putative chloroplast-targeted beta-amylase (bmy)
           mRNA, complete cds
          Length = 1980

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 711 gatccttgtcaacctcttcaacaacc 686
to top
>gb|AF367293.1|AF367293 Arabidopsis thaliana AT3g23920/F14O13_11 mRNA, complete cds
          Length = 1902

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 737 gatccttgtcaacctcttcaacaacc 712
to top
>emb|BX823311.1|CNS0A4RM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS21ZG02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1875

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 594 gatccttgtcaacatcttcaacaacc 619
           ||||||||||||| ||||||||||||
Sbjct: 741 gatccttgtcaacctcttcaacaacc 716
to top
>dbj|AP001297.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F14O13
          Length = 106203

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 594   gatccttgtcaacatcttcaacaacc 619
             ||||||||||||| ||||||||||||
Sbjct: 45739 gatccttgtcaacctcttcaacaacc 45714
to top
>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 306    atagcatccttaaatagcagt 326
              |||||||||||||||||||||
Sbjct: 562242 atagcatccttaaatagcagt 562262
to top
>ref|NM_183784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 612 caacaaccttctttttctcat 632
           |||||||||||||||||||||
Sbjct: 157 caacaaccttctttttctcat 137
to top
>gb|AC110719.7| Homo sapiens 3 BAC RP11-709N4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 153748

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    gcatccttaaatagcagtagc 329
              |||||||||||||||||||||
Sbjct: 103017 gcatccttaaatagcagtagc 102997
to top
>gb|AC022724.8| Homo sapiens chromosome 18, clone RP11-275K5, complete sequence
          Length = 163978

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 309   gcatccttaaatagcagtagc 329
             |||||||||||||||||||||
Sbjct: 39059 gcatccttaaatagcagtagc 39039
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 277      gcggtgtgcagtgtgccatgg 297
                |||||||||||||||||||||
Sbjct: 20912881 gcggtgtgcagtgtgccatgg 20912901
to top
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0426D06
          Length = 162173

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 612   caacaaccttctttttctcat 632
             |||||||||||||||||||||
Sbjct: 99638 caacaaccttctttttctcat 99658
to top
>gb|AC153877.5| Mus musculus 6 BAC RP23-258E21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 232977

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   tgaaccaccagttttacctgg 148
             |||||||||||||||||||||
Sbjct: 15794 tgaaccaccagttttacctgg 15774
to top
>gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 146781

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    tgaaccaccagttttacctgg 148
              |||||||||||||||||||||
Sbjct: 119717 tgaaccaccagttttacctgg 119697
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 277      gcggtgtgcagtgtgccatgg 297
                |||||||||||||||||||||
Sbjct: 20839095 gcggtgtgcagtgtgccatgg 20839115
to top
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 107819

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   gcggtgtgcagtgtgccatgg 297
             |||||||||||||||||||||
Sbjct: 46114 gcggtgtgcagtgtgccatgg 46094
to top
>ref|NM_123990.2| Arabidopsis thaliana CUL4 AT5G46210 (CUL4) mRNA, complete cds
          Length = 2687

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 552  tcttcataatacgaacaattgatgcatc 579
            ||||||||||||||||||| | ||||||
Sbjct: 2372 tcttcataatacgaacaatggctgcatc 2345
to top
>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence
          Length = 159888

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    tccaggtaatccctggttat 444
              ||||||||||||||||||||
Sbjct: 149404 tccaggtaatccctggttat 149423
to top
>gb|AY091113.1| Arabidopsis thaliana putative cullin (At5g46210) mRNA, complete cds
          Length = 2678

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 552  tcttcataatacgaacaattgatgcatc 579
            ||||||||||||||||||| | ||||||
Sbjct: 2372 tcttcataatacgaacaatggctgcatc 2345
to top
>gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-66N11 map q28, complete
              sequence
          Length = 191983

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    ctccttgtccctctccaggt 431
              ||||||||||||||||||||
Sbjct: 130886 ctccttgtccctctccaggt 130905
to top
>ref|NM_001011142.1| Xenopus tropicalis UDP-N-acetylglucosamine pyrophosphorylase 1
            (uap1), mRNA
          Length = 2077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  gctgctccacacactccatt 520
            ||||||||||||||||||||
Sbjct: 1416 gctgctccacacactccatt 1397
to top
>emb|AJ318018.1|ATH318018 Arabidopsis thaliana mRNA for cullin 4 (cul4 gene)
          Length = 2547

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 552  tcttcataatacgaacaattgatgcatc 579
            ||||||||||||||||||| | ||||||
Sbjct: 2236 tcttcataatacgaacaatggctgcatc 2209
to top
>gb|AC105749.2| Homo sapiens chromosome 3 clone RP11-640L9, complete sequence
          Length = 200450

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 279    ggtgtgcagtgtgccatggcacaa 302
              |||||||||||||||||| |||||
Sbjct: 122954 ggtgtgcagtgtgccatgccacaa 122931
to top
>gb|AC097360.2| Homo sapiens chromosome 3 clone RP11-344C13, complete sequence
          Length = 166349

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 279   ggtgtgcagtgtgccatggcacaa 302
             |||||||||||||||||| |||||
Sbjct: 65367 ggtgtgcagtgtgccatgccacaa 65344
to top
>gb|AC007849.24| Homo sapiens 3 BAC RP11-3K16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 199835

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ctttgaattgtctttgtggc 22
             ||||||||||||||||||||
Sbjct: 59910 ctttgaattgtctttgtggc 59929
to top
>gb|AE004731.1| Pseudomonas aeruginosa PAO1, section 292 of 529 of the complete genome
          Length = 18765

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   cgacagcggcaccagggtat 258
             ||||||||||||||||||||
Sbjct: 12612 cgacagcggcaccagggtat 12593
to top
>gb|AY084267.1| Arabidopsis thaliana clone 101723 mRNA, complete sequence
          Length = 2518

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 552  tcttcataatacgaacaattgatgcatc 579
            ||||||||||||||||||| | ||||||
Sbjct: 2236 tcttcataatacgaacaatggctgcatc 2209
to top
>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    tacctgggcagttctaccat 161
              ||||||||||||||||||||
Sbjct: 100742 tacctgggcagttctaccat 100761
to top
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    cctggttataagatcctcaa 455
              ||||||||||||||||||||
Sbjct: 159160 cctggttataagatcctcaa 159141
to top
>dbj|AB025620.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDE13
          Length = 14139

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 552  tcttcataatacgaacaattgatgcatc 579
            ||||||||||||||||||| | ||||||
Sbjct: 5090 tcttcataatacgaacaatggctgcatc 5117
to top
>emb|CR848106.2| Xenopus tropicalis finished cDNA, clone TGas117b20
          Length = 2026

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  gctgctccacacactccatt 520
            ||||||||||||||||||||
Sbjct: 1412 gctgctccacacactccatt 1393
to top
>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence
          Length = 178509

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    tccaggtaatccctggttat 444
              ||||||||||||||||||||
Sbjct: 175101 tccaggtaatccctggttat 175082
to top
>gb|BC084497.1| Xenopus tropicalis UDP-N-acetylglucosamine pyrophosphorylase 1, mRNA
            (cDNA clone MGC:89532 IMAGE:6993149), complete cds
          Length = 2077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 501  gctgctccacacactccatt 520
            ||||||||||||||||||||
Sbjct: 1416 gctgctccacacactccatt 1397
to top
>emb|AL663068.12| Mouse DNA sequence from clone RP23-30J5 on chromosome X, complete
              sequence
          Length = 225435

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 600    tgtcaacatcttcaacaaccttct 623
              |||||| |||||||||||||||||
Sbjct: 218335 tgtcaaaatcttcaacaaccttct 218312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,181,924
Number of Sequences: 3902068
Number of extensions: 5181924
Number of successful extensions: 98174
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97874
Number of HSP's gapped (non-prelim): 291
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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