ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21b17 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6 | 48 | 6e-06 | 2 | RS6B_ARATH (P51430) 40S ribosomal protein S6-2 | 48 | 6e-06 | 3 | RS6A_ARATH (O48549) 40S ribosomal protein S6-1 | 48 | 6e-06 | 4 | RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment) | 45 | 4e-05 | 5 | RS6_ICTPU (Q90YR8) 40S ribosomal protein S6 | 32 | 0.58 | 6 | RS6_RAT (P62755) 40S ribosomal protein S6 | 31 | 0.99 | 7 | RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6 | 31 | 0.99 | 8 | RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33) | 31 | 0.99 | 9 | RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33) | 31 | 0.99 | 10 | RS6_CHICK (P47838) 40S ribosomal protein S6 | 31 | 0.99 | 11 | RS6_XENLA (P39017) 40S ribosomal protein S6 | 29 | 2.9 | 12 | RS6_SPOFR (Q95V32) 40S ribosomal protein S6 | 28 | 8.3 |
|---|
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 48.1 bits (113), Expect = 6e-06 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRRSKLS 147 YQ LLA RLKEQRDRRSES+AK+RS+LS Sbjct: 213 YQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 48.1 bits (113), Expect = 6e-06 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRRSKLS 147 YQ LLA RLKEQRDRRSES+AK+RS+LS Sbjct: 213 YQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 48.1 bits (113), Expect = 6e-06 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRRSKLS 147 YQ LLA RLKEQRDRRSES+AK+RS+LS Sbjct: 213 YQKLLASRLKEQRDRRSESLAKKRSRLS 240
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 45.4 bits (106), Expect = 4e-05 Identities = 21/28 (75%), Positives = 26/28 (92%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRRSKLS 147 YQ LLA RLKEQR++RSES+AK+RS+LS Sbjct: 163 YQKLLASRLKEQREKRSESLAKKRSRLS 190
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 31.6 bits (70), Expect = 0.58 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA RLKE +++R E +AKRR Sbjct: 209 YAKLLAKRLKEAKEKRQEKIAKRR 232
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA R+KE +++R E +AKRR Sbjct: 209 YAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA R+KE +++R E +AKRR Sbjct: 209 YAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA R+KE +++R E +AKRR Sbjct: 209 YAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA R+KE +++R E +AKRR Sbjct: 209 YAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 30.8 bits (68), Expect = 0.99 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA R+KE +++R E +AKRR Sbjct: 209 YAKLLAKRMKEAKEKRQEQIAKRR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRR 159 Y LLA R KE +++R E +AKRR Sbjct: 209 YAKLLAKRSKEAKEKRQEQIAKRR 232
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 230 YQXLLAXRLKEQRDRRSESMAKRRS 156 Y LLA R KE + RR E + +RRS Sbjct: 213 YAKLLAQRKKESKVRRQEELKRRRS 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,678,021 Number of Sequences: 219361 Number of extensions: 287166 Number of successful extensions: 579 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 577 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 579 length of database: 80,573,946 effective HSP length: 52 effective length of database: 69,167,174 effective search space used: 1660012176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
