ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21b14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DXR_LEIXX (Q6AEY1) 1-deoxy-D-xylulose 5-phosphate reductoisomera... 28 6.5

>DXR_LEIXX (Q6AEY1) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 361

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 112 LPVPVHPXGAVHATVEDVPXHXVXRADPRDI 204
           + V VHP   VH+ VE V    + +A P D+
Sbjct: 212 IEVTVHPQSVVHSMVEFVDGSTIAQASPPDM 242


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,202,622
Number of Sequences: 219361
Number of extensions: 221828
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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