>YM23_YEAST (P40215) Hypothetical 62.8 kDa protein in RPS16A-TIF34 intergenic|
           region
          Length = 560

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
 Frame = -3

Query: 613 TAQVAAQQGQYLATCFNK----------MQAAEENPEGPIRIRGE---GRHRFNPFRYRH 473
           TAQVA Q+G+YLA  F K          M  A+++ E   R++ +    + +   F+Y H
Sbjct: 435 TAQVAHQEGEYLAQYFKKAYKIDQLNWKMTHAKDDSE-VARLKNQIVKTQSQIEDFKYNH 493

Query: 472 LGQFAPLGGEQTAAQLP---GDWVSIGHSSQWLWYSVYATKQISWRTRALVISDWGRRFI 302
            G  A +G ++  A L      +   G  +   W S Y    +S+R R LV  DW + + 
Sbjct: 494 KGALAYIGSDKAIADLAVGEAKYRLAGSFTFLFWKSAYLAMCLSFRNRVLVAMDWAKVYF 553

Query: 301 FGRDSS 284
            GRDSS
Sbjct: 554 LGRDSS 559

>NDI1_YEAST (P32340) Rotenone-insensitive NADH-ubiquinone oxidoreductase,|
           mitochondrial precursor (EC 1.6.5.3) (Internal NADH
           dehydrogenase)
          Length = 513

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
 Frame = -3

Query: 640 DSQVKNLPATAQVAAQQGQYLATCFNKMQAAEENPEGPIRIRGE------GRHRFNPFRY 479
           D+    LP TAQVA Q+ +YLA  F+KM A   N +  +  R +        + F PF+Y
Sbjct: 383 DNAFAGLPPTAQVAHQEAEYLAKNFDKM-AQIPNFQKNLSSRKDKIDLLFEENNFKPFKY 441

Query: 478 RHLGQFAPLGGEQTAAQLPGD----WVSIGHSSQWLWYSVYATKQISWRTRALVISDWGR 311
             LG  A LG E+  A +       +   G  + +LW  +Y +  +S R+R  V  DW +
Sbjct: 442 NDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIK 501

Query: 310 RFIFGRD 290
              F RD
Sbjct: 502 LAFFKRD 508

>CEBPE_RAT (P56261) CCAAT/enhancer-binding protein epsilon (C/EBP epsilon)|
           (C/EBP-related protein 1)
          Length = 281

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 553 AAEENPEGPIRIRGEGRHRFNPFRYR--HLGQFA 458
           A +E P GP   RG GR  +NP +Y+  H GQ A
Sbjct: 119 AVKEEPRGPEGNRGTGRGSYNPLQYQVAHCGQTA 152

>CEBPE_SHEEP (O77728) CCAAT/enhancer-binding protein epsilon (C/EBP epsilon)|
          Length = 281

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 553 AAEENPEGPIRIRGEGRHRFNPFRYR--HLGQFA 458
           A +E P GP   RG  R  +NP +Y+  H GQ A
Sbjct: 119 AVKEEPRGPEGSRGASRSGYNPLQYQVAHCGQTA 152

>TRPB2_CHLCV (Q822W3) Tryptophan synthase beta chain 2 (EC 4.2.1.20)|
          Length = 391

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 639 IHKSRIYLQQLRLLHSKDSILRRALTRCRLLKKILKVR----SALGEKAVIVSTPSG 481
           IH  RI+L++  LLH+    +  AL +C L K + K R    +  G+  V  +T  G
Sbjct: 64  IHGPRIFLKREDLLHTGAHKINNALGQCLLAKHLGKTRIIAETGAGQHGVATATACG 120

>CEBPE_MOUSE (Q6PZD9) CCAAT/enhancer-binding protein epsilon (C/EBP epsilon)|
          Length = 281

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 553 AAEENPEGPIRIRGEGRHRFNPFRYR--HLGQFA 458
           A +E P GP   RG  R  +NP +Y+  H GQ A
Sbjct: 119 AVKEEPRGPEGNRGTSRGSYNPLQYQVAHCGQTA 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,399,207
Number of Sequences: 219361
Number of extensions: 2236768
Number of successful extensions: 5861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5847
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)