ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20m14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480031.1| Oryza sativa (japonica cultivar-group), mRNA 436 e-119
2dbj|AK072710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 436 e-119
3gb|BT009120.1| Triticum aestivum clone wl1n.pk0008.d8:fis, full ... 321 2e-84
4gb|AY107518.1| Zea mays PCO125920 mRNA sequence 321 2e-84
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 172 1e-39
6dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic D... 172 1e-39
7dbj|AP003911.3| Oryza sativa (japonica cultivar-group) genomic D... 172 1e-39
8gb|BT002241.1| Arabidopsis thaliana At4g05020/T32N4_4 mRNA, comp... 98 5e-17
9gb|AF411555.1| Medicago sativa NADH dehydrogenase-like protein m... 92 3e-15
10ref|NM_116741.2| Arabidopsis thaliana calcium ion binding / disu... 90 1e-14
11gb|AY039856.1| Arabidopsis thaliana AT4g05020/T32N4_4 mRNA, comp... 90 1e-14
12emb|BX827077.1|CNS0A36R Arabidopsis thaliana Full-length cDNA Co... 90 1e-14
13emb|BX827398.1|CNS0A2CJ Arabidopsis thaliana Full-length cDNA Co... 90 1e-14
14emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 64 6e-07
15dbj|AK102878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
16gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana... 64 6e-07
17gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 64 6e-07
18dbj|AK103572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 3e-06
19gb|AC149577.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 58 4e-05
20emb|AJ245862.1|STU245862 Solanum tuberosum mRNA for external rot... 58 4e-05
21ref|NM_118269.2| Arabidopsis thaliana NADH dehydrogenase AT4G214... 56 2e-04
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
23dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 56 2e-04
24dbj|AK100884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
25gb|BT013752.1| Lycopersicon esculentum clone 132615R, mRNA sequence 50 0.010
26ref|NM_118962.3| Arabidopsis thaliana NADH dehydrogenase/ disulf... 46 0.15
27gb|BT025339.1| Arabidopsis thaliana At4g28220 mRNA, complete cds 46 0.15
28emb|BX828330.1|CNS0A2WJ Arabidopsis thaliana Full-length cDNA Co... 46 0.15
29emb|BX828002.1|CNS0A29V Arabidopsis thaliana Full-length cDNA Co... 46 0.15
30gb|AY106876.1| Zea mays PCO100812 mRNA sequence 46 0.15
31dbj|AB107447.1| Uncultured bacterium gene for 16S rRNA, partial ... 44 0.59
32gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cance... 40 9.3
33gb|AC105320.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
34gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
35gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases ... 40 9.3
36gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 9.3
37emb|X67433.1|MMTCR2 Mus musculus gene for T-cell receptor beta c... 40 9.3
38emb|AL139214.20| Human DNA sequence from clone RP11-166A4 on chr... 40 9.3
39emb|AL023883.6|HS404K8 Human DNA sequence from clone RP3-404K8 o... 40 9.3
40gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 40 9.3
41gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 ch... 40 9.3
42gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, comp... 40 9.3
43gb|AC068399.9| Homo sapiens chromosome 8, clone RP11-809K10, com... 40 9.3
44gb|AC159193.2| Mus musculus BAC clone RP24-68E20 from chromosome... 40 9.3
45gb|BC102114.1| Bos taurus regenerating islet-derived 3 alpha, mR... 40 9.3
46dbj|AK018014.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 9.3
47dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
48gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 40 9.3
49dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
50gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 40 9.3
51gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, comple... 40 9.3
52gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 40 9.3
53gb|AC091869.4| Homo sapiens chromosome 5 clone CTD-2381F15, comp... 40 9.3
54dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
55gb|AY911371.1| Bos taurus clone IMAGE:7961510 pancreatic thread ... 40 9.3
56gb|AF056940.1|AF056940 Drosophila virilis retrotransposon Tv1, c... 40 9.3
57emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene 40 9.3
58dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.3
59dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.3
60gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete s... 40 9.3
61gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, comp... 40 9.3
62gb|CP000225.1| Drosophila melanogaster genomic scaffold 21100002... 40 9.3
63ref|NM_001024534.2| Bos taurus regenerating islet-derived 3 alph... 40 9.3
64emb|X56725.2|MMTCRAGC M. musculus gene for T-cell receptor beta ... 40 9.3
65gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 9.3 
>ref|XM_480031.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2247

 Score =  436 bits (220), Expect = e-119
 Identities = 358/404 (88%)
 Strand = Plus / Minus

                                                                        
Query: 271  ttgactatatgccgctcgagtctctaccgaagatgaagcgacggccccagtcagatatca 330
            ||||||||||||  || ||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct: 1915 ttgactatatgcaacttgagtccctaccgaagataaagcgacggctccagtcagagatca 1856

                                                                        
Query: 331  ccagtgccctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagccact 390
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 1855 ccagtgccctcgtgcgccagcttatttgtttagttgcgtagacagaataccagagccact 1796

                                                                        
Query: 391  gtgagctgtggccgatggagacccagtcaccagggagctgtgcagcggtttgctcccctc 450
            ||| ||||||||| ||||||| ||| |||||||||||||||||||| || ||||| ||||
Sbjct: 1795 gtgtgctgtggccaatggagatccaatcaccagggagctgtgcagcagtctgctcacctc 1736

                                                                        
Query: 451  ctagtggggcaaactggcctaaatgcctgtacctgaaggggttgaaacgatgacggcctt 510
            ||||||||||||| ||||||||||||||||||||||| |||  ||||||||| || ||||
Sbjct: 1735 ctagtggggcaaattggcctaaatgcctgtacctgaaagggcggaaacgatggcgtcctt 1676

                                                                        
Query: 511  ctcccctaatgcggatcggaccttcaggattttcttcagcagcctgcatcttgttaaagc 570
            ||||||| || ||||| || |||||||| |||||||||||| ||| |||||| || ||||
Sbjct: 1675 ctccccttatacggatggggccttcagggttttcttcagcatccttcatcttattgaagc 1616

                                                                        
Query: 571  acgtcgcaagatactgtccttgctgtgcagcaacctgagctgttgcaggtagattcttga 630
            || | || | ||| ||||| ||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 1615 acctagccaaatattgtccctgctgtgaagcaacctgagcagttgcaggcagatttttga 1556

                                                        
Query: 631  cttgtgaatccacaagtgaaagagccttcttaaactcttcaatg 674
            |||| ||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 1555 cttgcgaatcaacaagagaaagagctttcttaaattcttcaatg 1512
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>dbj|AK072710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142K02, full
            insert sequence
          Length = 2323

 Score =  436 bits (220), Expect = e-119
 Identities = 358/404 (88%)
 Strand = Plus / Minus

                                                                        
Query: 271  ttgactatatgccgctcgagtctctaccgaagatgaagcgacggccccagtcagatatca 330
            ||||||||||||  || ||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct: 1992 ttgactatatgcaacttgagtccctaccgaagataaagcgacggctccagtcagagatca 1933

                                                                        
Query: 331  ccagtgccctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagccact 390
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 1932 ccagtgccctcgtgcgccagcttatttgtttagttgcgtagacagaataccagagccact 1873

                                                                        
Query: 391  gtgagctgtggccgatggagacccagtcaccagggagctgtgcagcggtttgctcccctc 450
            ||| ||||||||| ||||||| ||| |||||||||||||||||||| || ||||| ||||
Sbjct: 1872 gtgtgctgtggccaatggagatccaatcaccagggagctgtgcagcagtctgctcacctc 1813

                                                                        
Query: 451  ctagtggggcaaactggcctaaatgcctgtacctgaaggggttgaaacgatgacggcctt 510
            ||||||||||||| ||||||||||||||||||||||| |||  ||||||||| || ||||
Sbjct: 1812 ctagtggggcaaattggcctaaatgcctgtacctgaaagggcggaaacgatggcgtcctt 1753

                                                                        
Query: 511  ctcccctaatgcggatcggaccttcaggattttcttcagcagcctgcatcttgttaaagc 570
            ||||||| || ||||| || |||||||| |||||||||||| ||| |||||| || ||||
Sbjct: 1752 ctccccttatacggatggggccttcagggttttcttcagcatccttcatcttattgaagc 1693

                                                                        
Query: 571  acgtcgcaagatactgtccttgctgtgcagcaacctgagctgttgcaggtagattcttga 630
            || | || | ||| ||||| ||||||| |||||||||||| |||||||| ||||| ||||
Sbjct: 1692 acctagccaaatattgtccctgctgtgaagcaacctgagcagttgcaggcagatttttga 1633

                                                        
Query: 631  cttgtgaatccacaagtgaaagagccttcttaaactcttcaatg 674
            |||| ||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 1632 cttgcgaatcaacaagagaaagagctttcttaaattcttcaatg 1589
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>gb|BT009120.1| Triticum aestivum clone wl1n.pk0008.d8:fis, full insert mRNA sequence
          Length = 1596

 Score =  321 bits (162), Expect = 2e-84
 Identities = 326/378 (86%), Gaps = 2/378 (0%)
 Strand = Plus / Minus

                                                                        
Query: 285  ctcgagtctctaccgaagatgaagcgacggccccagtcagatatcaccagtgccctcgtg 344
            ||||||||||| ||||||||||| || ||   |||||| |||| ||||||   |||||||
Sbjct: 1247 ctcgagtctcttccgaagatgaatcggcgtgtccagtctgataccaccagcatcctcgtg 1188

                                                                        
Query: 345  cgccagcttatttgtttggttgcgtagacggaataccagagccactgtgagctgtggccg 404
            |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||| 
Sbjct: 1187 cgccagctgatttgtttggttgcgtacacggagtaccagagccactgggagctgtggcca 1128

                                                                        
Query: 405  atggagacccagtcaccagggagctgtgcagcggtttgctcccctcctagtggggcaaac 464
            ||||||| |||||| || || ||||||||||| ||||||||||||||||||||||| || 
Sbjct: 1127 atggagatccagtccccgggaagctgtgcagcagtttgctcccctcctagtggggcgaat 1068

                                                                        
Query: 465  tggcctaaatgcctgtacctgaaggggttgaaacgatgacggccttctcccctaatgcgg 524
            ||||| | ||||| |||||||||||||  ||| ||||| |||||||||||||| ||||||
Sbjct: 1067 tggcccagatgccggtacctgaaggggcggaagcgatggcggccttctcccctgatgcgg 1008

                                                                        
Query: 525  atcggaccttcaggattttcttcagcagcctgcatcttgttaaagcacgtcgcaagatac 584
            || || |||||||| |||||||||||| ||| |||||||||||||||| | |||||||| 
Sbjct: 1007 attgggccttcagggttttcttcagcatccttcatcttgttaaagcacctagcaagatat 948

                                                                        
Query: 585  tgtccttgctgtgcagcaacctgagctgttgcaggt-agattcttgacttgtgaatccac 643
            || || ||||| |  || |||||||| || |||||| ||| | |||||||||||||||||
Sbjct: 947  tggccctgctgcgatgcgacctgagcggtcgcaggtaagaat-ttgacttgtgaatccac 889

                              
Query: 644  aagtgaaagagccttctt 661
             || ||||||||||||||
Sbjct: 888  gagcgaaagagccttctt 871
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>gb|AY107518.1| Zea mays PCO125920 mRNA sequence
          Length = 1507

 Score =  321 bits (162), Expect = 2e-84
 Identities = 326/378 (86%), Gaps = 2/378 (0%)
 Strand = Plus / Minus

                                                                        
Query: 285  ctcgagtctctaccgaagatgaagcgacggccccagtcagatatcaccagtgccctcgtg 344
            ||||||||||| ||||||||||| || ||   |||||| |||| ||||||   |||||||
Sbjct: 1237 ctcgagtctcttccgaagatgaatcggcgtgtccagtctgataccaccagcatcctcgtg 1178

                                                                        
Query: 345  cgccagcttatttgtttggttgcgtagacggaataccagagccactgtgagctgtggccg 404
            |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||| 
Sbjct: 1177 cgccagctgatttgtttggttgcgtacacggagtaccagagccactgggagctgtggcca 1118

                                                                        
Query: 405  atggagacccagtcaccagggagctgtgcagcggtttgctcccctcctagtggggcaaac 464
            ||||||| |||||| || || ||||||||||| ||||||||||||||||||||||| || 
Sbjct: 1117 atggagatccagtccccgggaagctgtgcagcagtttgctcccctcctagtggggcgaat 1058

                                                                        
Query: 465  tggcctaaatgcctgtacctgaaggggttgaaacgatgacggccttctcccctaatgcgg 524
            ||||| | ||||| |||||||||||||  ||| ||||| |||||||||||||| ||||||
Sbjct: 1057 tggcccagatgccggtacctgaaggggcggaagcgatggcggccttctcccctgatgcgg 998

                                                                        
Query: 525  atcggaccttcaggattttcttcagcagcctgcatcttgttaaagcacgtcgcaagatac 584
            || || |||||||| |||||||||||| ||| |||||||||||||||| | |||||||| 
Sbjct: 997  attgggccttcagggttttcttcagcatccttcatcttgttaaagcacctagcaagatat 938

                                                                        
Query: 585  tgtccttgctgtgcagcaacctgagctgttgcaggt-agattcttgacttgtgaatccac 643
            || || ||||| |  || |||||||| || |||||| ||| | |||||||||||||||||
Sbjct: 937  tggccctgctgcgatgcgacctgagcggtcgcaggtaagaat-ttgacttgtgaatccac 879

                              
Query: 644  aagtgaaagagccttctt 661
             || ||||||||||||||
Sbjct: 878  gagcgaaagagccttctt 861
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  172 bits (87), Expect = 1e-39
 Identities = 114/123 (92%)
 Strand = Plus / Plus

                                                                           
Query: 363     gttgcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcacca 422
               ||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||| ||||||
Sbjct: 2304224 gttgcgtagacagaataccagagccactgtgtgctgtggccaatggagatccaatcacca 2304283

                                                                           
Query: 423     gggagctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtac 482
               |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 2304284 gggagctgtgcagcagtctgctcacctcctagtggggcaaattggcctaaatgcctgtac 2304343

                  
Query: 483     ctg 485
               |||
Sbjct: 2304344 ctg 2304346



 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                           
Query: 271     ttgactatatgccgctcgagtctctaccgaagatgaagcgacggccccagtcagatatca 330
               ||||||||||||  || ||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct: 2304020 ttgactatatgcaacttgagtccctaccgaagataaagcgacggctccagtcagagatca 2304079

                                              
Query: 331     ccagtgccctcgtgcgccagcttatttgttt 361
               |||||||||||||||||||||||||||||||
Sbjct: 2304080 ccagtgccctcgtgcgccagcttatttgttt 2304110



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                           
Query: 481     acctgaaggggttgaaacgatgacggccttctcccctaatgcggatcggaccttcaggat 540
               ||||||| |||  ||||||||| || ||||||||||| || ||||| || |||||||| |
Sbjct: 2304592 acctgaaagggcggaaacgatggcgtccttctccccttatacggatggggccttcagggt 2304651

                                                                           
Query: 541     tttcttcagcagcctgcatcttgttaaagcacgtcgcaagatactgtccttgctgtgcag 600
               ||||||||||| ||| |||||| || |||||| | || | ||| ||||| ||||||| ||
Sbjct: 2304652 tttcttcagcatccttcatcttattgaagcacctagccaaatattgtccctgctgtgaag 2304711

                       
Query: 601     caacctga 608
               ||||||||
Sbjct: 2304712 caacctga 2304719
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>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0473D02
          Length = 146185

 Score =  172 bits (87), Expect = 1e-39
 Identities = 114/123 (92%)
 Strand = Plus / Plus

                                                                         
Query: 363   gttgcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcacca 422
             ||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||| ||||||
Sbjct: 51723 gttgcgtagacagaataccagagccactgtgtgctgtggccaatggagatccaatcacca 51782

                                                                         
Query: 423   gggagctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtac 482
             |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 51783 gggagctgtgcagcagtctgctcacctcctagtggggcaaattggcctaaatgcctgtac 51842

                
Query: 483   ctg 485
             |||
Sbjct: 51843 ctg 51845



 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                         
Query: 271   ttgactatatgccgctcgagtctctaccgaagatgaagcgacggccccagtcagatatca 330
             ||||||||||||  || ||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct: 51519 ttgactatatgcaacttgagtccctaccgaagataaagcgacggctccagtcagagatca 51578

                                            
Query: 331   ccagtgccctcgtgcgccagcttatttgttt 361
             |||||||||||||||||||||||||||||||
Sbjct: 51579 ccagtgccctcgtgcgccagcttatttgttt 51609



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                         
Query: 481   acctgaaggggttgaaacgatgacggccttctcccctaatgcggatcggaccttcaggat 540
             ||||||| |||  ||||||||| || ||||||||||| || ||||| || |||||||| |
Sbjct: 52091 acctgaaagggcggaaacgatggcgtccttctccccttatacggatggggccttcagggt 52150

                                                                         
Query: 541   tttcttcagcagcctgcatcttgttaaagcacgtcgcaagatactgtccttgctgtgcag 600
             ||||||||||| ||| |||||| || |||||| | || | ||| ||||| ||||||| ||
Sbjct: 52151 tttcttcagcatccttcatcttattgaagcacctagccaaatattgtccctgctgtgaag 52210

                     
Query: 601   caacctga 608
             ||||||||
Sbjct: 52211 caacctga 52218
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>dbj|AP003911.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1368_G08
          Length = 107074

 Score =  172 bits (87), Expect = 1e-39
 Identities = 114/123 (92%)
 Strand = Plus / Plus

                                                                          
Query: 363    gttgcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcacca 422
              ||||||||||| ||||||||||||||||||| ||||||||| ||||||| ||| ||||||
Sbjct: 102351 gttgcgtagacagaataccagagccactgtgtgctgtggccaatggagatccaatcacca 102410

                                                                          
Query: 423    gggagctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtac 482
              |||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 102411 gggagctgtgcagcagtctgctcacctcctagtggggcaaattggcctaaatgcctgtac 102470

                 
Query: 483    ctg 485
              |||
Sbjct: 102471 ctg 102473



 Score =  125 bits (63), Expect = 2e-25
 Identities = 84/91 (92%)
 Strand = Plus / Plus

                                                                          
Query: 271    ttgactatatgccgctcgagtctctaccgaagatgaagcgacggccccagtcagatatca 330
              ||||||||||||  || ||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct: 102147 ttgactatatgcaacttgagtccctaccgaagataaagcgacggctccagtcagagatca 102206

                                             
Query: 331    ccagtgccctcgtgcgccagcttatttgttt 361
              |||||||||||||||||||||||||||||||
Sbjct: 102207 ccagtgccctcgtgcgccagcttatttgttt 102237



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                          
Query: 481    acctgaaggggttgaaacgatgacggccttctcccctaatgcggatcggaccttcaggat 540
              ||||||| |||  ||||||||| || ||||||||||| || ||||| || |||||||| |
Sbjct: 102719 acctgaaagggcggaaacgatggcgtccttctccccttatacggatggggccttcagggt 102778

                                                                          
Query: 541    tttcttcagcagcctgcatcttgttaaagcacgtcgcaagatactgtccttgctgtgcag 600
              ||||||||||| ||| |||||| || |||||| | || | ||| ||||| ||||||| ||
Sbjct: 102779 tttcttcagcatccttcatcttattgaagcacctagccaaatattgtccctgctgtgaag 102838

                      
Query: 601    caacctga 608
              ||||||||
Sbjct: 102839 caacctga 102846
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>gb|BT002241.1| Arabidopsis thaliana At4g05020/T32N4_4 mRNA, complete cds
          Length = 1749

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 124/149 (83%)
 Strand = Plus / Minus

                                                                        
Query: 366  gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
            ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 1658 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 1599

                                                                        
Query: 426  agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
            || |||||||| |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 1598 agttgtgcagccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 1539

                                         
Query: 486  aaggggttgaaacgatgacggccttctcc 514
            ||||||  |||||| ||||| ||||||||
Sbjct: 1538 aaggggcggaaacggtgacgaccttctcc 1510
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>gb|AF411555.1| Medicago sativa NADH dehydrogenase-like protein mRNA, partial cds
          Length = 546

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 115/138 (83%)
 Strand = Plus / Minus

                                                                       
Query: 411 acccagtcaccagggagctgtgcagcggtttgctcccctcctagtggggcaaactggcct 470
           ||||| || ||||| ||||||||||| || ||||| ||||| || || ||||| || |||
Sbjct: 208 acccaatctccaggtagctgtgcagctgtctgctcgcctcccagaggagcaaattgacct 149

                                                                       
Query: 471 aaatgcctgtacctgaaggggttgaaacgatgacggccttctcccctaatgcggatcgga 530
            ||||| ||||||||||||| ||||| |||||||| |||||||||||||  |  || |||
Sbjct: 148 gaatgcttgtacctgaagggcttgaaccgatgacgcccttctcccctaaatctaatagga 89

                             
Query: 531 ccttcaggattttcttca 548
           ||||| ||||||| ||||
Sbjct: 88  ccttctggatttttttca 71



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                       
Query: 411 acccagtcaccagggagctgtgcagcggtttgctcccctcctagtggggcaaactggcct 470
           ||||| || ||||| ||||||||||| || ||||| ||||| || || ||||| || |||
Sbjct: 315 acccaatctccaggtagctgtgcagctgtctgctcgcctcccagaggagcaaattgacct 256

                                              
Query: 471 aaatgcctgtacctgaaggggttgaaacgatgacg 505
            ||||| ||||||||||||| ||||| ||||||||
Sbjct: 255 caatgcttgtacctgaagggcttgaaccgatgacg 221
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>ref|NM_116741.2| Arabidopsis thaliana calcium ion binding / disulfide oxidoreductase
            AT4G05020 mRNA, complete cds
          Length = 2179

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
            ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 1715 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 1656

                                                                        
Query: 426  agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
            || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 1655 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 1596

                                         
Query: 486  aaggggttgaaacgatgacggccttctcc 514
            ||||||  |||||| ||||| ||||||||
Sbjct: 1595 aaggggcggaaacggtgacgaccttctcc 1567
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>gb|AY039856.1| Arabidopsis thaliana AT4g05020/T32N4_4 mRNA, complete cds
          Length = 2179

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
            ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 1715 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 1656

                                                                        
Query: 426  agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
            || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 1655 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 1596

                                         
Query: 486  aaggggttgaaacgatgacggccttctcc 514
            ||||||  |||||| ||||| ||||||||
Sbjct: 1595 aaggggcggaaacggtgacgaccttctcc 1567
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>emb|BX827077.1|CNS0A36R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB92ZD02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 640

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                       
Query: 366 gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
           ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 226 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 167

                                                                       
Query: 426 agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
           || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 166 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 107

                                        
Query: 486 aaggggttgaaacgatgacggccttctcc 514
           ||||||  |||||| ||||| ||||||||
Sbjct: 106 aaggggcggaaacggtgacgaccttctcc 78
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>emb|BX827398.1|CNS0A2CJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS50ZC05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2032

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                        
Query: 366  gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
            ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 1666 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 1607

                                                                        
Query: 426  agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
            || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 1606 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 1547

                                         
Query: 486  aaggggttgaaacgatgacggccttctcc 514
            ||||||  |||||| ||||| ||||||||
Sbjct: 1546 aaggggcggaaacggtgacgaccttctcc 1518
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>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                          
Query: 366    gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
              ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 108048 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 107989

                                                                          
Query: 426    agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
              || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 107988 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 107929
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>dbj|AK102878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112G02, full
            insert sequence
          Length = 2285

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtgcgccagcttatttgtttggttgcgtagacggaataccagagccactgtgagctgtgg 401
            |||||||| || | ||||||| |||| || || || |||||||||||||| | ||| |||
Sbjct: 1809 gtgcgccaactcacttgtttgcttgcatatacagagtaccagagccactgagtgctatgg 1750

                                                        
Query: 402  ccgatggagacccagtcaccagggagctgtgcagcggtttgctc 445
            || ||||| |||||||| || ||||||| |||||| | ||||||
Sbjct: 1749 cccatggaaacccagtcgcctgggagctctgcagcagcttgctc 1706



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 576  gcaagatactgtccttgctgtgcagcaacctgagctgttgc 616
            |||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 1569 gcaagatagtgtccttgttgtgctgcaacctgagctgttgc 1529
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>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
              complete sequence
          Length = 183147

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 98/120 (81%)
 Strand = Plus / Plus

                                                                          
Query: 366    gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
              ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 145061 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 145120

                                                                          
Query: 426    agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
              || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 145121 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 145180
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>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
          Length = 80196

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                         
Query: 366   gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
             ||||||||||| ||||||||||||||   |||||| || || || ||||| || || || 
Sbjct: 46523 gcgtagacggagtaccagagccactggctgctgtgtccaatagaaacccaatctcctgga 46464

                                                                         
Query: 426   agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
             || ||||| || |||||||||||||| ||||| ||||| || || | |||||| ||||||
Sbjct: 46463 agttgtgctgccgtttgctcccctcccagtggtgcaaattgtcccagatgcctatacctg 46404
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>dbj|AK103572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132N13, full
            insert sequence
          Length = 2764

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 378  taccagagccactgtgagctgtggccgatggagacccagtcaccagggagctgtgcagcg 437
            |||||||||||||| | ||| ||||| ||||| |||||||| || ||||||| |||||| 
Sbjct: 2235 taccagagccactgagtgctatggcccatggaaacccagtcgcctgggagctctgcagca 2176

                       
Query: 438  gtttgctcccc 448
            | |||||||||
Sbjct: 2175 gcttgctcccc 2165



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 576  gcaagatactgtccttgctgtgcagcaacctgagctgttgc 616
            |||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 2031 gcaagatagtgtccttgttgtgctgcaacctgagctgttgc 1991
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>gb|AC149577.3| Medicago truncatula chromosome 2 BAC clone mth2-13b10, complete sequence
          Length = 126904

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                          
Query: 480    tacctgaaggggttgaaacgatgacggccttctcccctaatgcggatcggaccttcagga 539
              ||||||||||| ||||| |||||||| |||||||||||||  |  || |||||||| |||
Sbjct: 109034 tacctgaagggtttgaaccgatgacgcccttctcccctaaacctaataggaccttctgga 108975

                       
Query: 540    ttttcttca 548
              |||| ||||
Sbjct: 108974 tttttttca 108966



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                          
Query: 411    acccagtcaccagggagctgtgcagcggtttgctcccctcctagtggggcaaactggcct 470
              ||||| || ||||| ||||||||||| || ||||| ||||| || || ||||| || |||
Sbjct: 109386 acccaatctccaggtagctgtgcagctgtctgctcgcctcccagaggagcaaattgacct 109327

                            
Query: 471    aaatgcctgtacct 484
              |||||| |||||||
Sbjct: 109326 aaatgcttgtacct 109313
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>emb|AJ245862.1|STU245862 Solanum tuberosum mRNA for external rotenone-insensitive NADPH
            dehydrogenase (ndb1 gene)
          Length = 2050

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 338  cctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagccactgtgagct 397
            ||||||||||||||| | ||| ||| |||| || || || ||||| |||||||||| |||
Sbjct: 1736 cctcgtgcgccagctaacttgcttgcttgcatacactgagtaccatagccactgtgtgct 1677

                                 
Query: 398  gtggccgatggagacccagtc 418
            |||||| || || ||||||||
Sbjct: 1676 gtggcccatagaaacccagtc 1656



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 588  ccttgctgtgcagcaacctgagctgttgcaggtaga 623
            ||||| || |||||||||||||| || |||||||||
Sbjct: 1486 ccttgttgagcagcaacctgagcagtggcaggtaga 1451
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>ref|NM_118269.2| Arabidopsis thaliana NADH dehydrogenase AT4G21490 mRNA, complete cds
          Length = 1707

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 139/176 (78%)
 Strand = Plus / Minus

                                                                        
Query: 366  gcgtagacggaataccagagccactgtgagctgtggccgatggagacccagtcaccaggg 425
            ||||| ||||| ||||| ||||| ||   |||||| || || || |||||||| || || 
Sbjct: 1616 gcgtaaacggagtaccacagccattgactgctgtgtcctatcgaaacccagtctcctgga 1557

                                                                        
Query: 426  agctgtgcagcggtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
            || || || |||||||| || ||||||| ||| ||||| || || ||||| || ||||||
Sbjct: 1556 agttgcgccgcggtttgttcgcctcctaatggagcaaattgtcccaaatgtctatacctg 1497

                                                                    
Query: 486  aaggggttgaaacgatgacggccttctcccctaatgcggatcggaccttcaggatt 541
            |||||   ||| || ||||| |||||||| ||||| |  || ||||||||||||||
Sbjct: 1496 aagggacggaagcggtgacgaccttctcctctaatcctaatgggaccttcaggatt 1441
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 378      taccagagccactgtgagctgtggccgatggagacccagtcaccagggagctgtgcagcg 437
                |||||||||||||| | ||| ||||| ||||| |||||||| || ||||||| |||||| 
Sbjct: 28121268 taccagagccactgagtgctatggcccatggaaacccagtcgcctgggagctctgcagca 28121327

                        
Query: 438      gtttgctc 445
                | ||||||
Sbjct: 28121328 gcttgctc 28121335
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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0009H10
          Length = 175754

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 378   taccagagccactgtgagctgtggccgatggagacccagtcaccagggagctgtgcagcg 437
             |||||||||||||| | ||| ||||| ||||| |||||||| || ||||||| |||||| 
Sbjct: 52174 taccagagccactgagtgctatggcccatggaaacccagtcgcctgggagctctgcagca 52233

                     
Query: 438   gtttgctc 445
             | ||||||
Sbjct: 52234 gcttgctc 52241
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>dbj|AK100884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127O13, full
            insert sequence
          Length = 2052

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 438  gtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctgaaggggttgaaa 497
            |||||||| || || ||||| ||||||||||| |  |||||||||||||| || ||||| 
Sbjct: 1596 gtttgctctccacccagtggagcaaactggccaaggtgcctgtacctgaaaggtttgaac 1537

                    
Query: 498  cgatgacg 505
            ||||||||
Sbjct: 1536 cgatgacg 1529
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>gb|BT013752.1| Lycopersicon esculentum clone 132615R, mRNA sequence
          Length = 2079

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 338  cctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagccactgtgagct 397
            ||||||||||||||| | ||| ||| |||| || || || ||||| |||||||||| |||
Sbjct: 1772 cctcgtgcgccagctaacttgcttgcttgcatacacagagtaccatagccactgtgtgct 1713

                                 
Query: 398  gtggccgatggagacccagtc 418
             ||||| || || ||||||||
Sbjct: 1712 atggcccatagaaacccagtc 1692
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>ref|NM_118962.3| Arabidopsis thaliana NADH dehydrogenase/ disulfide oxidoreductase
            AT4G28220 mRNA, complete cds
          Length = 4493

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 329  caccagtgccctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagcca 388
            |||||| |||||||| |||||||| | ||| ||| | || || || ||||||||||||||
Sbjct: 1743 caccagagccctcgttcgccagctaacttgcttgctggcataaacagaataccagagcca 1684

               
Query: 389  ctg 391
            |||
Sbjct: 1683 ctg 1681
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>gb|BT025339.1| Arabidopsis thaliana At4g28220 mRNA, complete cds
          Length = 1716

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 329  caccagtgccctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagcca 388
            |||||| |||||||| |||||||| | ||| ||| | || || || ||||||||||||||
Sbjct: 1662 caccagagccctcgttcgccagctaacttgcttgctggcataaacagaataccagagcca 1603

               
Query: 389  ctg 391
            |||
Sbjct: 1602 ctg 1600
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>emb|BX828330.1|CNS0A2WJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH77ZE08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1849

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 329  caccagtgccctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagcca 388
            |||||| |||||||| |||||||| | ||| ||| | || || || ||||||||||||||
Sbjct: 1694 caccagagccctcgttcgccagctaacttgcttgctggcataaacagaataccagagcca 1635

               
Query: 389  ctg 391
            |||
Sbjct: 1634 ctg 1632
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>emb|BX828002.1|CNS0A29V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZA11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1926

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 329  caccagtgccctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagcca 388
            |||||| |||||||| |||||||| | ||| ||| | || || || ||||||||||||||
Sbjct: 1743 caccagagccctcgttcgccagctaacttgcttgctggcataaacagaataccagagcca 1684

               
Query: 389  ctg 391
            |||
Sbjct: 1683 ctg 1681
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>gb|AY106876.1| Zea mays PCO100812 mRNA sequence
          Length = 2361

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 338  cctcgtgcgccagcttatttgtttggttgcgtagacggaataccagagcca 388
            |||||||||||| || | ||||||| |||| ||||| |||||||| |||||
Sbjct: 2108 cctcgtgcgccaactgaattgtttgcttgcatagacagaataccacagcca 2058



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 594  tgtgcagcaacctgagctgttgcaggtagattcttgacttgtgaatccac 643
            ||||||||||||||||| ||||| || ||  |||||||||| || |||||
Sbjct: 1852 tgtgcagcaacctgagccgttgctgggagcatcttgacttgagagtccac 1803
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>dbj|AB107447.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone:
           2-G01
          Length = 554

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 150 ttttattctttccctgacaaaa 171
           ||||||||||||||||||||||
Sbjct: 500 ttttattctttccctgacaaaa 479
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>gb|AC153851.27| Mus musculus 6 BAC RP23-61N4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217854

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    caaacaaaatcatatctcct 270
              ||||||||||||||||||||
Sbjct: 118975 caaacaaaatcatatctcct 118956
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>gb|AC105320.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1675_H07,
             complete sequence
          Length = 135294

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 438   gtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
             |||||||| || || ||||| ||||||||||| |  ||||||||||||
Sbjct: 53498 gtttgctctccacccagtggagcaaactggccaaggtgcctgtacctg 53545
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>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04,
            complete sequence
          Length = 168424

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 438  gtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
            |||||||| || || ||||| ||||||||||| |  ||||||||||||
Sbjct: 4563 gtttgctctccacccagtggagcaaactggccaaggtgcctgtacctg 4610
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>gb|AE000663.1|MMAE000663 Mus musculus TCR beta locus from bases 1 to 250611 (section 1 of 3) of
              the complete sequence
          Length = 250611

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    caaacaaaatcatatctcct 270
              ||||||||||||||||||||
Sbjct: 181776 caaacaaaatcatatctcct 181757
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>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete
             sequence
          Length = 185081

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    aaaaggtaagtacaaaggaa 113
             ||||||||||||||||||||
Sbjct: 77406 aaaaggtaagtacaaaggaa 77387
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>emb|X67433.1|MMTCR2 Mus musculus gene for T-cell receptor beta chain, VJ-region
          Length = 650

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 caaacaaaatcatatctcct 270
           ||||||||||||||||||||
Sbjct: 115 caaacaaaatcatatctcct 96
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>emb|AL139214.20| Human DNA sequence from clone RP11-166A4 on chromosome 1q31.1-31.3
             Contains the 3' end of a novel gene, complete sequence
          Length = 142555

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aagaaaaactagtacaaaat 47
             ||||||||||||||||||||
Sbjct: 88161 aagaaaaactagtacaaaat 88142
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>emb|AL023883.6|HS404K8 Human DNA sequence from clone RP3-404K8 on chromosome 6p22.2-22.3
             Contains the PRL gene for prolactin, complete sequence
          Length = 151236

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   aatcatatctcctttgacta 277
             ||||||||||||||||||||
Sbjct: 18281 aatcatatctcctttgacta 18300
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>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 224687

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     aaaaggtaagtacaaaggaa 113
              ||||||||||||||||||||
Sbjct: 122859 aaaaggtaagtacaaaggaa 122878
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>gb|DQ378291.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmid
             47B4, complete sequence
          Length = 37265

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aaaactagtacaaaattaat 51
             ||||||||||||||||||||
Sbjct: 22934 aaaactagtacaaaattaat 22915
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>gb|AC025479.8| Homo sapiens chromosome 8, clone RP11-358J8, complete sequence
          Length = 176647

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aaaactagtacaaaattaat 51
             ||||||||||||||||||||
Sbjct: 10673 aaaactagtacaaaattaat 10654
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>gb|AC068399.9| Homo sapiens chromosome 8, clone RP11-809K10, complete sequence
          Length = 195367

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aaaactagtacaaaattaat 51
              ||||||||||||||||||||
Sbjct: 151228 aaaactagtacaaaattaat 151209
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>gb|AC159193.2| Mus musculus BAC clone RP24-68E20 from chromosome 12, complete sequence
          Length = 243976

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ttgcttttattctttccctg 165
             ||||||||||||||||||||
Sbjct: 22487 ttgcttttattctttccctg 22506
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>gb|BC102114.1| Bos taurus regenerating islet-derived 3 alpha, mRNA (cDNA clone
           MGC:126957 IMAGE:7929453), complete cds
          Length = 839

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 546 tcagcagcctgcatcttgtt 565
           ||||||||||||||||||||
Sbjct: 616 tcagcagcctgcatcttgtt 635
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>dbj|AK018014.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830455I16 product:T-cell receptor beta,
           joining region, full insert sequence
          Length = 1357

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 caaacaaaatcatatctcct 270
           ||||||||||||||||||||
Sbjct: 116 caaacaaaatcatatctcct 97
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 438      gtttgctcccctcctagtggggcaaactggcctaaatgcctgtacctg 485
                |||||||| || || ||||| ||||||||||| |  ||||||||||||
Sbjct: 15349541 gtttgctctccacccagtggagcaaactggccaaggtgcctgtacctg 15349588
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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    caaacaaaatcatatctcct 270
              ||||||||||||||||||||
Sbjct: 118440 caaacaaaatcatatctcct 118421
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 90       gagtaaaaggtaagtacaaa 109
                ||||||||||||||||||||
Sbjct: 10844672 gagtaaaaggtaagtacaaa 10844691
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 94      aaaaggtaagtacaaaggaa 113
               ||||||||||||||||||||
Sbjct: 1410578 aaaaggtaagtacaaaggaa 1410559
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>gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, complete sequence
          Length = 159439

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gtaagtacaaaggaattttt 118
             ||||||||||||||||||||
Sbjct: 61328 gtaagtacaaaggaattttt 61347
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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    caaacaaaatcatatctcct 270
              ||||||||||||||||||||
Sbjct: 190414 caaacaaaatcatatctcct 190395
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>gb|AC091869.4| Homo sapiens chromosome 5 clone CTD-2381F15, complete sequence
          Length = 156441

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   caaacaaaatcatatctcct 270
             ||||||||||||||||||||
Sbjct: 15450 caaacaaaatcatatctcct 15431
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>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0025P13
          Length = 133242

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    gagtaaaaggtaagtacaaa 109
             ||||||||||||||||||||
Sbjct: 31688 gagtaaaaggtaagtacaaa 31707
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>gb|AY911371.1| Bos taurus clone IMAGE:7961510 pancreatic thread protein mRNA,
           complete cds
          Length = 727

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 546 tcagcagcctgcatcttgtt 565
           ||||||||||||||||||||
Sbjct: 528 tcagcagcctgcatcttgtt 547
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>gb|AF056940.1|AF056940 Drosophila virilis retrotransposon Tv1, complete sequence
          Length = 6868

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   aaaactagtacaaaattaat 51
            ||||||||||||||||||||
Sbjct: 3990 aaaactagtacaaaattaat 4009
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>emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene
          Length = 5082

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 94   aaaaggtaagtacaaaggaa 113
            ||||||||||||||||||||
Sbjct: 2798 aaaaggtaagtacaaaggaa 2779
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>dbj|AP001930.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-669L23, complete
             sequences
          Length = 167117

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 546   tcagcagcctgcatcttgtt 565
             ||||||||||||||||||||
Sbjct: 57205 tcagcagcctgcatcttgtt 57224
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>dbj|AP005366.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB565H3, complete
             sequence
          Length = 101002

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaaactagtacaaaattaat 51
             ||||||||||||||||||||
Sbjct: 82557 aaaactagtacaaaattaat 82576
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>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence
          Length = 162405

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    agactttggtggaaggtacc 216
              ||||||||||||||||||||
Sbjct: 111080 agactttggtggaaggtacc 111099
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>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence
          Length = 188290

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 389   ctgtgagctgtggccgatggagac 412
             |||||||||||||||| |||||||
Sbjct: 46942 ctgtgagctgtggccgctggagac 46965
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>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724
          Length = 820587

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     aaaactagtacaaaattaat 51
              ||||||||||||||||||||
Sbjct: 535252 aaaactagtacaaaattaat 535233
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>ref|NM_001024534.2| Bos taurus regenerating islet-derived 3 alpha (REG3A), mRNA
          Length = 839

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 546 tcagcagcctgcatcttgtt 565
           ||||||||||||||||||||
Sbjct: 616 tcagcagcctgcatcttgtt 635
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>emb|X56725.2|MMTCRAGC M. musculus gene for T-cell receptor beta chain (germline)
          Length = 604

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 caaacaaaatcatatctcct 270
           ||||||||||||||||||||
Sbjct: 108 caaacaaaatcatatctcct 89
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 433     cagcggtttgctcccctcct 452
               ||||||||||||||||||||
Sbjct: 1162806 cagcggtttgctcccctcct 1162787


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,233,208
Number of Sequences: 3902068
Number of extensions: 6233208
Number of successful extensions: 105959
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105651
Number of HSP's gapped (non-prelim): 306
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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