ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20m09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479151.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1362 Score = 196 bits (99), Expect = 6e-47 Identities = 195/227 (85%) Strand = Plus / Minus Query: 252 cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311 |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| | Sbjct: 1041 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 982 Query: 312 atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371 |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 981 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 922 Query: 372 aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431 |||||||| || | |||||||||||| || | ||||| |||| |||| ||||||||| Sbjct: 921 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 862 Query: 432 agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478 || || ||| | ||||| ||||| |||| |||||| ||| ||||||| Sbjct: 861 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 815
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 196 bits (99), Expect = 6e-47 Identities = 195/227 (85%) Strand = Plus / Minus Query: 252 cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311 |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| | Sbjct: 25251774 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 25251715 Query: 312 atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371 |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 25251714 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 25251655 Query: 372 aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431 |||||||| || | |||||||||||| || | ||||| |||| |||| ||||||||| Sbjct: 25251654 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 25251595 Query: 432 agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478 || || ||| | ||||| ||||| |||| |||||| ||| ||||||| Sbjct: 25251594 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 25251548
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 196 bits (99), Expect = 6e-47 Identities = 195/227 (85%) Strand = Plus / Minus Query: 252 cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311 |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| | Sbjct: 68445 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 68386 Query: 312 atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371 |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 68385 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 68326 Query: 372 aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431 |||||||| || | |||||||||||| || | ||||| |||| |||| ||||||||| Sbjct: 68325 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 68266 Query: 432 agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478 || || ||| | ||||| ||||| |||| |||||| ||| ||||||| Sbjct: 68265 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 68219
>dbj|AK111336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F03, full insert sequence Length = 1362 Score = 196 bits (99), Expect = 6e-47 Identities = 195/227 (85%) Strand = Plus / Minus Query: 252 cacacctcggcacagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgcc 311 |||| |||||| ||||||||||||||||| ||||| | || ||| ||||||||||||| | Sbjct: 1041 cacagctcggcgcagcactcgtagcagccgaggcaggcgaacgccgcgcagacctgcgtc 982 Query: 312 atcatgatggcgcactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcag 371 |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 981 atcacgatggcgcactggtcgttcatcttgttgcaggccttgatgcagcacatgcagcag 922 Query: 372 aggcagtccgcaacgcggctgcagcaccctccagccttcttgaatatcttcaacgtctcc 431 |||||||| || | |||||||||||| || | ||||| |||| |||| ||||||||| Sbjct: 921 aggcagtcggcgaggcggctgcagcagccggcggccttgttgaggatctcgaacgtctcc 862 Query: 432 agtggtttctcctcgccaaaacctgtgaggaggttttccttggtggc 478 || || ||| | ||||| ||||| |||| |||||| ||| ||||||| Sbjct: 861 agcggcttcacgtcgccgaaacccgtgacgaggttctccctggtggc 815
>gb|AY104391.1| Zea mays PCO073745 mRNA sequence Length = 1301 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Minus Query: 264 cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323 ||||||||| |||| || ||||||| || ||||||||| |||||||||| | ||||||| Sbjct: 1075 cagcactcgaagcatcccaggcacgcgatggcggcgcaggcctgcgccatgacgatggcg 1016 Query: 324 cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383 ||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||| Sbjct: 1015 cactggtcgttcatcttgctgcacgccttgatgaagcacatgcagcagcagcagtccgcc 956 Query: 384 acgcggctgcagca 397 | |||||||||||| Sbjct: 955 atgcggctgcagca 942
>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete sequence Length = 145714 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 264 cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323 ||||||||| |||| | ||||||||||||||| |||| | |||| |||| | ||||||| Sbjct: 73616 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 73557 Query: 324 cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383 ||| ||||||||||| || |||| | |||||| |||||||||||||| |||||||| Sbjct: 73556 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 73497 Query: 384 acgcggctgcagca 397 | |||||||||||| Sbjct: 73496 aggcggctgcagca 73483
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Plus Query: 264 cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323 ||||||||| |||| | ||||||||||||||| |||| | |||| |||| | ||||||| Sbjct: 16510717 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 16510776 Query: 324 cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383 ||| ||||||||||| || |||| | |||||| |||||||||||||| |||||||| Sbjct: 16510777 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 16510836 Query: 384 acgcggctgcagca 397 | |||||||||||| Sbjct: 16510837 aggcggctgcagca 16510850
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Plus Query: 264 cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323 ||||||||| |||| | ||||||||||||||| |||| | |||| |||| | ||||||| Sbjct: 16504350 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 16504409 Query: 324 cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383 ||| ||||||||||| || |||| | |||||| |||||||||||||| |||||||| Sbjct: 16504410 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 16504469 Query: 384 acgcggctgcagca 397 | |||||||||||| Sbjct: 16504470 aggcggctgcagca 16504483
>dbj|AK062571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C06, full insert sequence Length = 1289 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 264 cagcactcgtagcagccaaggcacgagagcgcggcgcagacctgcgccatcatgatggcg 323 ||||||||| |||| | ||||||||||||||| |||| | |||| |||| | ||||||| Sbjct: 1057 cagcactcgaagcatgcgaggcacgagagcgcgccgcacagctgcaccatgacgatggcg 998 Query: 324 cactggtcgttcatcctgttgcacgccttgatgcagcacatgcagcagaggcagtccgca 383 ||| ||||||||||| || |||| | |||||| |||||||||||||| |||||||| Sbjct: 997 caccggtcgttcatcttgctgcaggtgttgatgaagcacatgcagcagcagcagtccgtg 938 Query: 384 acgcggctgcagca 397 | |||||||||||| Sbjct: 937 aggcggctgcagca 924
>gb|AF419981.1|AF419981 Drosophila yakuba defective chorion-1 fc125 protein precursor (dec-1) mRNA, complete cds, alternatively spliced Length = 3898 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 353 gatgcagcacatgcagcagaggcagt 378 ||||||||| |||||||||||||||| Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
>gb|AF419980.1|AF419980 Drosophila yakuba defective chorion-1 fc106 protein precursor (dec-1) mRNA, complete cds, alternatively spliced Length = 3911 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 353 gatgcagcacatgcagcagaggcagt 378 ||||||||| |||||||||||||||| Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
>gb|AF419979.1|AF419979 Drosophila yakuba defective chorion-1 fc177 protein precursor (dec-1) mRNA, complete cds, alternatively spliced Length = 5926 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 353 gatgcagcacatgcagcagaggcagt 378 ||||||||| |||||||||||||||| Sbjct: 2150 gatgcagcagatgcagcagaggcagt 2175
>emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 in linkage group 7, complete sequence Length = 50326 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 353 gatgcagcacatgcagcagaggcag 377 |||||||||||||||||||| |||| Sbjct: 14896 gatgcagcacatgcagcagatgcag 14920
>ref|XM_677758.1| PREDICTED: Danio rerio similar to trinucleotide repeat containing 9 (LOC555286), partial mRNA Length = 2115 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 353 gatgcagcacatgcagcagaggcag 377 |||||||||||||||||||| |||| Sbjct: 1254 gatgcagcacatgcagcagatgcag 1278
>gb|AC084387.1| Mus musculus BAC clone RP23-93H2 from 7, complete sequence Length = 175948 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 attggcaccttttgtgtccttttc 557 ||||||||||| |||||||||||| Sbjct: 27109 attggcaccttctgtgtccttttc 27086
>emb|AL157711.12| Human DNA sequence from clone RP11-21M8 on chromosome 10 Contains part of the DOCK1 gene for dedicator of cyto-kinesis 1, complete sequence Length = 154818 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 ggtttctgcttgactttttt 577 |||||||||||||||||||| Sbjct: 123029 ggtttctgcttgactttttt 123048
>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence Length = 141868 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 cacagtatgacacccacaggcttc 191 |||||||||||| ||||||||||| Sbjct: 730 cacagtatgacatccacaggcttc 707
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 cggctgcagcaccctccagc 406 |||||||||||||||||||| Sbjct: 2687473 cggctgcagcaccctccagc 2687492
>emb|AL589744.18| Mouse DNA sequence from clone RP23-80C18 on chromosome 13 Contains a nove gene, a ribosomal protein large p1 (Rplp1) pseudogene and the Cmah gene for CMP-N-Acetylneuraminic acid hydroxylase, complete sequence Length = 216800 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 aacctgtgaggaggttttcc 470 |||||||||||||||||||| Sbjct: 44844 aacctgtgaggaggttttcc 44863
>gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, complete sequence Length = 173836 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 441 tcctcgccaaaacctgtgaggagg 464 ||||| |||||||||||||||||| Sbjct: 128772 tcctccccaaaacctgtgaggagg 128795
>gb|AC090763.7| Homo sapiens chromosome 15, clone RP11-408F10, complete sequence Length = 149304 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 cacagtatgacacccacaggcttc 191 |||||||||||| ||||||||||| Sbjct: 114055 cacagtatgacatccacaggcttc 114032
>gb|AC083814.17|AC083814 Mus musculus 7 BAC RP23-129J16 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 191410 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gatcattctttgatcaagca 158 |||||||||||||||||||| Sbjct: 114051 gatcattctttgatcaagca 114070
>gb|AC080015.15|AC080015 Mus musculus 7 BAC RP23-163B17 (RPCI Mouse BAC) complete sequence Length = 202086 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gatcattctttgatcaagca 158 |||||||||||||||||||| Sbjct: 177122 gatcattctttgatcaagca 177103
>dbj|AK000789.1| Homo sapiens cDNA FLJ20782 fis, clone COL03841 Length = 2834 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 ggtttctgcttgactttttt 577 |||||||||||||||||||| Sbjct: 935 ggtttctgcttgactttttt 954
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 gaggaggttttccttggtgg 477 |||||||||||||||||||| Sbjct: 1533189 gaggaggttttccttggtgg 1533208
>gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome 14, complete sequence Length = 195329 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 tttccttggtggctgctttgtcac 489 ||||||| |||||||||||||||| Sbjct: 104867 tttcctttgtggctgctttgtcac 104890 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,554,298 Number of Sequences: 3902068 Number of extensions: 4554298 Number of successful extensions: 85404 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85277 Number of HSP's gapped (non-prelim): 127 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
