>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = -1

Query: 84  KEQVDARSVYVGNVDYACTPEEVQQHF 4
           KE +DA+SVYVGNVDY+ TPEE+Q HF
Sbjct: 49  KESIDAQSVYVGNVDYSVTPEELQSHF 75

>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -1

Query: 90  EAKEQVDARSVYVGNVDYACTPEEVQQHF 4
           E K + DARS+YVGNVDY  T EE++ HF
Sbjct: 159 EEKMEADARSIYVGNVDYGATAEELEAHF 187

>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -1

Query: 90  EAKEQVDARSVYVGNVDYACTPEEVQQHF 4
           E K + DARS+YVGNVDY  T EE++ HF
Sbjct: 163 EEKMEADARSIYVGNVDYGATAEELEAHF 191

>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = -1

Query: 90  EAKEQVDARSVYVGNVDYACTPEEVQQHF 4
           E K + DARS+YVGNVDY  T EE++ HF
Sbjct: 163 EEKMEADARSIYVGNVDYGATAEELEAHF 191

>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12|
          Length = 197

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = -1

Query: 96  TAEAKEQVDARSVYVGNVDYACTPEEVQQHFQ 1
           T E ++ +DA+SV++GNVD+  T EEV++HF+
Sbjct: 51  TEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFK 82

>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4|
          Length = 237

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = -1

Query: 96  TAEAKEQVDARSVYVGNVDYACTPEEVQQHFQ 1
           T E ++ +DA+SV++GNVD+  T EE+++HF+
Sbjct: 91  TEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFK 122

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = -1

Query: 96  TAEAKEQVDARSVYVGNVDYACTPEEVQQHFQ 1
           TAE K++ D+R+++V N+ Y+ T EE+Q+ F+
Sbjct: 314 TAENKKERDSRTLFVKNIPYSTTVEELQEIFE 345

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -1

Query: 78  QVDARSVYVGNVDYACTPEEVQQHFQ 1
           + D+RS++VGN+    TPE+++ HF+
Sbjct: 60  EADSRSIFVGNITPDVTPEQIEDHFK 85

>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 78   QVDARSVYVGNVDYACTPEEVQQHF 4
            +VD R++ +GNV+ A T  EV+ HF
Sbjct: 1441 KVDGRTMQMGNVEIATTGTEVKPHF 1465

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1|
          homolog
          Length = 342

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 81 EQVDARSVYVGNVDYACTPEEVQQHFQ 1
          E    R +++G +DY  T E ++QHF+
Sbjct: 12 EPEHVRKLFIGGLDYRTTDESLKQHFE 38

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = -1

Query: 108 ANASTAEAKEQVDARSVYVGNVDYACTPEEVQQHFQ 1
           ANA T   +E  D R +YVGN+D A T + ++Q+FQ
Sbjct: 62  ANAITG-GRETSD-RVLYVGNLDKAITEDILKQYFQ 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,907,721
Number of Sequences: 219361
Number of extensions: 151989
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 80,573,946
effective HSP length: 17
effective length of database: 76,844,809
effective search space used: 1844275416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)