ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21a24 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 256 bits (653), Expect = 6e-68 Identities = 124/142 (87%), Positives = 127/142 (89%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIA 513 AARFANGGAYPPDLSLITKARH+GQNYVFALLT Y DPPAGV IREGLHYNPYFPGGAIA Sbjct: 179 AARFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIA 238 Query: 512 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 333 MPKML DGA+EYEDG PATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF Sbjct: 239 MPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQA 298 Query: 332 AYYRRMRWSVLKSRKLVLDVVN 267 AYYRR+RWSVLKSRKLVLDVVN Sbjct: 299 AYYRRLRWSVLKSRKLVLDVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 255 bits (651), Expect = 1e-67 Identities = 123/142 (86%), Positives = 127/142 (89%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIA 513 AARFANGGAYPPDLSLITKARH+GQNYVFALLT Y DPPAGV IREGLHYNPYFPGGAIA Sbjct: 119 AARFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIA 178 Query: 512 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 333 MPKML DGA+EYEDG PATEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF Sbjct: 179 MPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQA 238 Query: 332 AYYRRMRWSVLKSRKLVLDVVN 267 AYYRR+RWSVLKSRKLVLDVVN Sbjct: 239 AYYRRLRWSVLKSRKLVLDVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 175 bits (443), Expect = 1e-43 Identities = 83/140 (59%), Positives = 104/140 (74%), Gaps = 1/140 (0%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAI 516 AARFAN GA PPDLSLI KARH G +Y+F+LLTGY D PPAG + GL++NPYFPG I Sbjct: 173 AARFANNGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYFPGTGI 232 Query: 515 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 336 AM ++L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG+K + Sbjct: 233 AMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFAL 292 Query: 335 XAYYRRMRWSVLKSRKLVLD 276 Y +R +W+ LKSRK+V D Sbjct: 293 SVYVKRYKWAWLKSRKIVYD 312
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 163 bits (413), Expect = 4e-40 Identities = 77/140 (55%), Positives = 101/140 (72%), Gaps = 1/140 (0%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHD-PPAGVQIREGLHYNPYFPGGAI 516 AAR AN GA PPDLSLI KARH G +Y+F+LLTGY D PPAGV + G +YNPYFPGG+I Sbjct: 164 AARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSI 223 Query: 515 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 336 AM ++L D +EYEDGTPAT +QM KDV +FL+W AEPE +ERK +G+K + Sbjct: 224 AMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLL 283 Query: 335 XAYYRRMRWSVLKSRKLVLD 276 + ++ +W+ +K+RK V + Sbjct: 284 SIWVKKFKWAGIKTRKFVFN 303
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 163 bits (413), Expect = 4e-40 Identities = 77/140 (55%), Positives = 101/140 (72%), Gaps = 1/140 (0%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGY-HDPPAGVQIREGLHYNPYFPGGAI 516 AAR AN GA PPDLSLI KARH G +Y+FALLTGY +PPAGV + G +YNPYFPGG+I Sbjct: 149 AARAANQGALPPDLSLIVKARHGGPDYIFALLTGYPEEPPAGVVLPPGANYNPYFPGGSI 208 Query: 515 AMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXX 336 AM ++L D +EYEDGTPAT +QM KDV +FL W +EPE +ERK +G+K + Sbjct: 209 AMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLL 268 Query: 335 XAYYRRMRWSVLKSRKLVLD 276 + ++ +W+ +KSRK+V + Sbjct: 269 SVWVKKFKWASIKSRKIVFN 288
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 160 bits (404), Expect = 4e-39 Identities = 76/136 (55%), Positives = 96/136 (70%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIA 513 AAR AN GA PPDLS I +ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AI Sbjct: 184 AARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIG 243 Query: 512 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 333 M + +EY+DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + Sbjct: 244 MAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLT 303 Query: 332 AYYRRMRWSVLKSRKL 285 +R +WSVLKSRKL Sbjct: 304 YAMKRHKWSVLKSRKL 319
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 160 bits (404), Expect = 4e-39 Identities = 76/136 (55%), Positives = 97/136 (71%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIA 513 AAR AN GA PPDLS I +ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AIA Sbjct: 184 AARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIA 243 Query: 512 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 333 M + +E++DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + Sbjct: 244 MAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLV 303 Query: 332 AYYRRMRWSVLKSRKL 285 +R +WSVLKSRKL Sbjct: 304 YTIKRHKWSVLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 159 bits (403), Expect = 6e-39 Identities = 76/136 (55%), Positives = 97/136 (71%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIA 513 AAR AN GA PPDLS I +ARH G++YVF+LLTGY +PP GV +REGL++NPYFPG AI Sbjct: 100 AARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIG 159 Query: 512 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 333 M + + +E++DGTPAT +Q+ KDV +FL WAAEPE + RK MG+K + Sbjct: 160 MAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLV 219 Query: 332 AYYRRMRWSVLKSRKL 285 +R +WSVLKSRKL Sbjct: 220 YAMKRHKWSVLKSRKL 235
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 142 bits (357), Expect = 1e-33 Identities = 73/142 (51%), Positives = 86/142 (60%), Gaps = 1/142 (0%) Frame = -2 Query: 689 ARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDP-PAGVQIREGLHYNPYFPGGAIA 513 AR+AN GA PPDLS+IT ARH G +Y++ALLTGY P P GVQ+ YNPYF GG I Sbjct: 99 ARYANNGALPPDLSVITNARHGGVDYIYALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIG 158 Query: 512 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 333 MP L D IEYEDGTPA+ QM KDV FL W + P +ERKL+G K I Sbjct: 159 MPPPLTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSS 218 Query: 332 AYYRRMRWSVLKSRKLVLDVVN 267 YY R + +SR+L N Sbjct: 219 GYYNRFLSGLWRSRRLAFRPFN 240
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 122 bits (305), Expect = 1e-27 Identities = 67/125 (53%), Positives = 77/125 (61%), Gaps = 19/125 (15%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKAR------------------HDGQNYVFALLTGYHDP-PAG 570 AAR ANGGA PPDLSLITKAR G +YV A+L G+ + P G Sbjct: 537 AARAANGGAAPPDLSLITKARSYGRGFPWFIFDFFTQYQEQGPDYVSAVLQGFEEKVPEG 596 Query: 569 VQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEE 390 V I EG +YN YFPG AI MPK L DG + Y+DG+PAT AQ KDV +FL W AEP ME Sbjct: 597 VTIPEGSYYNKYFPGHAIKMPKPLSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEA 656 Query: 389 RKLMG 375 RK +G Sbjct: 657 RKRLG 661
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 119 bits (298), Expect = 9e-27 Identities = 62/124 (50%), Positives = 78/124 (62%), Gaps = 16/124 (12%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAG----------------VQI 561 AA ANGGA PPDLSL+ KAR G NY+++LL GY G V Sbjct: 124 AAAAANGGAAPPDLSLLAKARPGGPNYIYSLLEGYASDSPGEPAEWWVKQQQEKGLEVAF 183 Query: 560 REGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKL 381 E ++N YFPG AI+MP LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ RK Sbjct: 184 NEAKYFNDYFPGHAISMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKS 243 Query: 380 MGVK 369 +G+K Sbjct: 244 LGLK 247
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 107 bits (267), Expect = 3e-23 Identities = 55/124 (44%), Positives = 70/124 (56%), Gaps = 18/124 (14%) Frame = -2 Query: 692 AARFANGGAYPPDLSLITKAR------------------HDGQNYVFALLTGYHDPPAGV 567 AAR + GA PPDLS+I KAR +G +Y+ ALL GY DPP Sbjct: 129 AARIIHNGAVPPDLSVIAKARTFQRGFPWWVTDIFTQYNENGVDYIVALLNGYEDPPERF 188 Query: 566 QIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEER 387 ++ +G YN YFPG I M + DG + Y DGTP T+ Q KDV +FL WAAEP ++ R Sbjct: 189 KVPDGSFYNKYFPGHIIGMTPPIADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVR 248 Query: 386 KLMG 375 K +G Sbjct: 249 KRIG 252
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 75.5 bits (184), Expect = 1e-13 Identities = 49/144 (34%), Positives = 64/144 (44%), Gaps = 17/144 (11%) Frame = -2 Query: 677 NGGAYPPDLSLITKARHD-----------------GQNYVFALLTGYHDPPAGVQIREGL 549 +G PDLSL+ KAR G Y+ A+LTGY D + L Sbjct: 302 SGEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGY-DGEEKEEAGAVL 360 Query: 548 HYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 369 ++N F G I M L D + YEDGTPAT QM DV +FL W AEP+M +RK +G Sbjct: 361 YHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFV 420 Query: 368 WIFXXXXXXXXXAYYRRMRWSVLK 297 + + W +K Sbjct: 421 SVIFLIVLAALLYLTNKKLWQPIK 444
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 67.0 bits (162), Expect = 5e-11 Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 36/165 (21%) Frame = -2 Query: 674 GGAYPPDLSLITKARHD-----------------GQNYVFALLTGYHD-PPAGVQIREGL 549 G PDLS++ KAR G Y++ + G+ + P + +G Sbjct: 114 GDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGY 173 Query: 548 HYNPYFPGGAIA------------------MPKMLMDGAIEYEDGTPATEAQMGKDVVSF 423 +YN F G + MP L+D + YEDGTPAT QM +DV +F Sbjct: 174 YYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAF 233 Query: 422 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRK 288 L WAAEP++ RK MG+ + + W+ K K Sbjct: 234 LMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTNKRLWAPYKGHK 278
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 65.9 bits (159), Expect = 1e-10 Identities = 48/161 (29%), Positives = 69/161 (42%), Gaps = 38/161 (23%) Frame = -2 Query: 656 DLSLITKARHD-----------------GQNYVFALLTGY-HDPPAGVQIRE--GLHYNP 537 DLSL+ KAR G Y++++LTG+ +PP + E G +YN Sbjct: 121 DLSLMAKARAGFHGPMGTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNR 180 Query: 536 YFPGGA------------------IAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWA 411 F G+ IAMP LMD +EY DG A+ M +DV +FL WA Sbjct: 181 AFQNGSVPDTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWA 240 Query: 410 AEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRK 288 AEP++ RK G + + W+ +K +K Sbjct: 241 AEPKLMARKQAGFTAVMFLTVLSVLLYLTNKRLWAGVKGKK 281
>CY1_CHRVI (O31216) Cytochrome c1 precursor| Length = 244 Score = 33.9 bits (76), Expect = 0.48 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 21/120 (17%) Frame = -2 Query: 671 GAYPPDLSLITK------------------ARHDGQNYVFALLTGYHDPPAGVQIREGLH 546 G PPDL+L+T+ R G N V L G +Q R+ Sbjct: 104 GVVPPDLTLVTRWRSPDWVYTYLKSFYLDDTRPYGVNNVLFPLVGMPHVLGDLQGRQEAV 163 Query: 545 YNP-YFPGG--AIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 375 P + PGG I K++ +G + +P M +D+ +FL++A EP ER+ +G Sbjct: 164 MEPSHEPGGEPTIKGVKLVEEGGL-----SPQEYDTMVRDITNFLTYAGEPFQLERERIG 218
>KORA_METTH (O27112) 2-oxoglutarate synthase subunit korA (EC 1.2.7.3)| (2-ketoglutarate oxidoreductase alpha chain) (KOR) (2-oxoglutarate-ferredoxin oxidoreductase alpha subunit) Length = 375 Score = 30.8 bits (68), Expect = 4.1 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Frame = -2 Query: 686 RFANGGAYPPDLSLITKARHDGQNYVFALLTGYHDPPAGVQIREGLHYNPYFPGGAIAMP 507 R G + PP+ L A DG + A GY P G+ EG + + P G + Sbjct: 188 RKRRGPSVPPEEFLPFSAPEDGVPEMPAFGDGYRIPVTGLTHDEGGYPDASNPEGHHRLV 247 Query: 506 KMLMDGAIEYEDGTPATEAQMGKDV-VSFLSWAA 408 K L D + + D + ++ +D ++ +S+ A Sbjct: 248 KRLCDKILRHRDRISDVQEELTEDAYITVISYGA 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,246,946 Number of Sequences: 219361 Number of extensions: 2222291 Number of successful extensions: 5450 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5439 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
