ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474422.1| Oryza sativa (japonica cultivar-group), predic... 295 9e-77
2dbj|AK067506.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 9e-77
3dbj|AK059717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 9e-77
4gb|AY108407.1| Zea mays PCO110242 mRNA sequence 232 1e-57
5gb|BT017949.1| Zea mays clone EL01N0522B07.c mRNA sequence 220 4e-54
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
7emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 186 6e-44
8emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 186 6e-44
9emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 186 6e-44
10gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 44 0.58
11gb|AC137691.7| Mus musculus chromosome 13, clone RP23-104G24, co... 42 2.3
12emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on ch... 42 2.3
13emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chr... 42 2.3
14emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on... 42 2.3
15emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete ... 42 2.3
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
17emb|AJ512827.1|XLA512827 Xenopus laevis partial mRNA for putativ... 42 2.3
18emb|CR962125.2| Medicago truncatula chromosome 5 clone mth2-179a... 42 2.3
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.3
20emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb... 42 2.3
21ref|XM_633336.1| Dictyostelium discoideum hypothetical protein (... 40 9.1
22gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
23gb|AY647312.1| Natronococcus occultus strain MSU4810 16S ribosom... 40 9.1
24gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
26gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosom... 40 9.1
27gb|AC121877.2| Mus musculus BAC clone RP24-127G8 from 7, complet... 40 9.1
28emb|AL391873.15| Human DNA sequence from clone RP11-399N11 on ch... 40 9.1
29emb|AL109807.16|HSJ1185K9 Human DNA sequence from clone RP5-1185... 40 9.1
30gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genom... 40 9.1
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
33dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
34dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
35dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.1
36dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
37ref|XM_319575.2| Anopheles gambiae str. PEST ENSANGP00000006376 ... 40 9.1
38dbj|AK066065.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.1
39emb|AL132865.1|CEY62E10A Caenorhabditis elegans YAC Y62E10A, com... 40 9.1
40emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chr... 40 9.1
41emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chro... 40 9.1
42gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosom... 40 9.1
43gb|M15347.1|HUMTGPL2 Human Pro-tRNA and Thr-tRNA genes 40 9.1 
>ref|XM_474422.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1905

 Score =  295 bits (149), Expect = 9e-77
 Identities = 236/265 (89%)
 Strand = Plus / Minus

                                                                        
Query: 399  tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccg 458
            ||||| || ||||||||||| || || || || || ||||||||||||||||||||||| 
Sbjct: 1853 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggccca 1794

                                                                        
Query: 459  aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
            ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 1793 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 1734

                                                                        
Query: 519  gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
            ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1733 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 1674

                                                                        
Query: 579  aattgcatattgaaagacctgaatctctctttcacagcagttcttgaagctccactgcta 638
            ||| ||| |||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1673 aatagcacattgaaagacctgaatctctctttgaccgcagctcttgaagctccactgcta 1614

                                     
Query: 639  ttgccaccttcgcttcctgcttgac 663
            ||||| || || |||||| ||||||
Sbjct: 1613 ttgcctccctcacttcctacttgac 1589
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>dbj|AK067506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108D21, full
            insert sequence
          Length = 2478

 Score =  295 bits (149), Expect = 9e-77
 Identities = 236/265 (89%)
 Strand = Plus / Minus

                                                                        
Query: 399  tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccg 458
            ||||| || ||||||||||| || || || || || ||||||||||||||||||||||| 
Sbjct: 2080 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggccca 2021

                                                                        
Query: 459  aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
            ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 2020 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 1961

                                                                        
Query: 519  gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
            ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1960 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 1901

                                                                        
Query: 579  aattgcatattgaaagacctgaatctctctttcacagcagttcttgaagctccactgcta 638
            ||| ||| |||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1900 aatagcacattgaaagacctgaatctctctttgaccgcagctcttgaagctccactgcta 1841

                                     
Query: 639  ttgccaccttcgcttcctgcttgac 663
            ||||| || || |||||| ||||||
Sbjct: 1840 ttgcctccctcacttcctacttgac 1816
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>dbj|AK059717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-G05, full
            insert sequence
          Length = 1555

 Score =  295 bits (149), Expect = 9e-77
 Identities = 236/265 (89%)
 Strand = Plus / Minus

                                                                        
Query: 399  tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccg 458
            ||||| || ||||||||||| || || || || || ||||||||||||||||||||||| 
Sbjct: 1249 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggccca 1190

                                                                        
Query: 459  aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
            ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 1189 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 1130

                                                                        
Query: 519  gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
            ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1129 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 1070

                                                                        
Query: 579  aattgcatattgaaagacctgaatctctctttcacagcagttcttgaagctccactgcta 638
            ||| ||| |||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct: 1069 aatagcacattgaaagacctgaatctctctttgaccgcagctcttgaagctccactgcta 1010

                                     
Query: 639  ttgccaccttcgcttcctgcttgac 663
            ||||| || || |||||| ||||||
Sbjct: 1009 ttgcctccctcacttcctacttgac 985
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>gb|AY108407.1| Zea mays PCO110242 mRNA sequence
          Length = 1245

 Score =  232 bits (117), Expect = 1e-57
 Identities = 264/313 (84%)
 Strand = Plus / Minus

                                                                       
Query: 344 ctatcaagaacgttcttgtttcccctcgaataggttgcccaggaacagctcgagctgctc 403
           |||||||| |||||||||||||||||||||||  ||||| || | ||||||||| |||||
Sbjct: 883 ctatcaagcacgttcttgtttcccctcgaataaattgcctagcagcagctcgagttgctc 824

                                                                       
Query: 404 aggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcccgaagcg 463
            || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||| || ||
Sbjct: 823 gggagtgtgcttcacgtatttcccaggtgctttgctattctcaatgagaggcccaaaacg 764

                                                                       
Query: 464 cttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagtgactc 523
            |||  ||| |||| ||| || || ||||| ||||| || || || ||||| ||||||||
Sbjct: 763 ttttatgaatgatcggtaggcaggcaacaggatttcagcgaccgcgagtcttagtgactc 704

                                                                       
Query: 524 tcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttcaaattg 583
            |||| ||| |  |||||||| ||||||||||| ||||| || || |||||||| ||   
Sbjct: 703 gcgcagctcagtgtctggaacggaccagccacattgcttgtggtagatctcttcgaacaa 644

                                                                       
Query: 584 catattgaaagacctgaatctctctttcacagcagttcttgaagctccactgctattgcc 643
           || ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 643 cacattgaaagacctgaatctctccttcacagctgttcttgaagctccactgctattgcc 584

                        
Query: 644 accttcgcttcct 656
           ||| || ||||||
Sbjct: 583 accatcacttcct 571
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>gb|BT017949.1| Zea mays clone EL01N0522B07.c mRNA sequence
          Length = 1300

 Score =  220 bits (111), Expect = 4e-54
 Identities = 255/303 (84%)
 Strand = Plus / Minus

                                                                        
Query: 354  cgttcttgtttcccctcgaataggttgcccaggaacagctcgagctgctcaggcgtgtgc 413
            ||||||||||||||||||||||  ||||| || | ||||||||| ||||| || ||||||
Sbjct: 1082 cgttcttgtttcccctcgaataaattgcctagcagcagctcgagttgctcgggagtgtgc 1023

                                                                        
Query: 414  ttgacgtacttcccaggcgctttgctgttctcgatgagaggcccgaagcgcttttggaaa 473
            || ||||| |||||||| |||||||| ||||| ||||||||||| || || |||  ||| 
Sbjct: 1022 ttcacgtatttcccaggtgctttgctattctcaatgagaggcccaaaacgttttatgaat 963

                                                                        
Query: 474  gatctgtatgcgggtaacagaatttctgcaactgccagtctcagtgactctcgcaactct 533
            |||| ||| || || ||||| ||||| || || || ||||| |||||||| |||| ||| 
Sbjct: 962  gatcggtaggcaggcaacaggatttcagcgaccgcgagtcttagtgactcgcgcagctca 903

                                                                        
Query: 534  gaatctggaacagaccagccacactgcttttgataaatctcttcaaattgcatattgaaa 593
            |  |||||||| ||||||||||| ||||| || || |||||||| ||   || |||||||
Sbjct: 902  gtgtctggaacggaccagccacattgcttgtggtagatctcttcgaacaacacattgaaa 843

                                                                        
Query: 594  gacctgaatctctctttcacagcagttcttgaagctccactgctattgccaccttcgctt 653
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 842  gacctgaatctctccttcacagctgttcttgaagctccactgctattgccaccatcactt 783

               
Query: 654  cct 656
            |||
Sbjct: 782  cct 780
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                            
Query: 459      aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
                ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 35058432 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 35058491

                                                                            
Query: 519      gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
                ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 35058492 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 35058551

                                          
Query: 579      aattgcatattgaaagacctgaatct 604
                ||| ||| ||||||||||||||||||
Sbjct: 35058552 aatagcacattgaaagacctgaatct 35058577



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 603      ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 662
                |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 35058675 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 35058734

                 
Query: 663      c 663
                |
Sbjct: 35058735 c 35058735



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                          
Query: 399      tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 456
                ||||| || ||||||||||| || || || || || ||||||||||||||||||||||
Sbjct: 35057577 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggcc 35057634
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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                         
Query: 459   aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
             ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 13137 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 13196

                                                                         
Query: 519   gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
             ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13197 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 13256

                                       
Query: 579   aattgcatattgaaagacctgaatct 604
             ||| ||| ||||||||||||||||||
Sbjct: 13257 aatagcacattgaaagacctgaatct 13282



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 603   ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 662
             |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 13380 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 13439

              
Query: 663   c 663
             |
Sbjct: 13440 c 13440



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 399   tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 456
             ||||| || ||||||||||| || || ||||| || ||||||||||||||||||||||
Sbjct: 12282 tgctctggtgtgtgcttgacatattttccaggtgccttgctgttctcgatgagaggcc 12339
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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                         
Query: 459   aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
             ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 90137 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 90196

                                                                         
Query: 519   gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
             ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 90197 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 90256

                                       
Query: 579   aattgcatattgaaagacctgaatct 604
             ||| ||| ||||||||||||||||||
Sbjct: 90257 aatagcacattgaaagacctgaatct 90282



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 603   ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 662
             |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 90380 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 90439

              
Query: 663   c 663
             |
Sbjct: 90440 c 90440



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 399   tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 456
             ||||| || ||||||||||| || || ||||| || ||||||||||||||||||||||
Sbjct: 89282 tgctctggtgtgtgcttgacatattttccaggtgccttgctgttctcgatgagaggcc 89339
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
              complete sequence
          Length = 145391

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                          
Query: 459    aagcgcttttggaaagatctgtatgcgggtaacagaatttctgcaactgccagtctcagt 518
              ||||||||| |||||||||||||||| || ||||| ||||| |||||||| ||||| |||
Sbjct: 117479 aagcgctttaggaaagatctgtatgcaggcaacaggatttcagcaactgcaagtcttagt 117538

                                                                          
Query: 519    gactctcgcaactctgaatctggaacagaccagccacactgcttttgataaatctcttca 578
              ||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 117539 gactcacgcaactccgtatctggaacagaccagccacactgcttttgataaatctcctca 117598

                                        
Query: 579    aattgcatattgaaagacctgaatct 604
              ||| ||| ||||||||||||||||||
Sbjct: 117599 aatagcacattgaaagacctgaatct 117624



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 603    ctctctttcacagcagttcttgaagctccactgctattgccaccttcgcttcctgcttga 662
              |||||||| || |||| |||||||||||||||||||||||| || || |||||| |||||
Sbjct: 117722 ctctctttgaccgcagctcttgaagctccactgctattgcctccctcacttcctacttga 117781

               
Query: 663    c 663
              |
Sbjct: 117782 c 117782



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 399    tgctcaggcgtgtgcttgacgtacttcccaggcgctttgctgttctcgatgagaggcc 456
              ||||| || ||||||||||| || || || || || ||||||||||||||||||||||
Sbjct: 116624 tgctctggtgtgtgcttgacatattttccgggtgccttgctgttctcgatgagaggcc 116681
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 593     agacctgaatctctctttcaca 614
               ||||||||||||||||||||||
Sbjct: 3295664 agacctgaatctctctttcaca 3295643
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>gb|AC137691.7| Mus musculus chromosome 13, clone RP23-104G24, complete sequence
          Length = 204418

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 547    accagccacactgcttttgat 567
              |||||||||||||||||||||
Sbjct: 173340 accagccacactgcttttgat 173360
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>emb|AL391728.19| Human DNA sequence from clone RP11-423A18 on chromosome 1 Contains part
             of gene KIAA1365 and the PIN1L gene for protein
             (peptidyl-prolyl cis/trans isomerase) NIMA-interacting
             1-like, complete sequence
          Length = 153750

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 581   ttgcatattgaaagacctgaa 601
             |||||||||||||||||||||
Sbjct: 37344 ttgcatattgaaagacctgaa 37324
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>emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chromosome 1p35.1-36.13
           Contains the C1QA gene for complement component 1( q
           subcomponent, alpha polypeptide), the C1QG gene for
           complement component 1 (q subcomponent, gamma
           polypeptide), the C1QB gene for complement component 1
           (q subcomponent, beta polypeptide), the 5' end of the
           EPHB2 gene for EphB2 and a CpG island, complete sequence
          Length = 87320

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 294 tacaggaacaccgtcgcaccctcac 318
           |||||||||||| ||||||||||||
Sbjct: 521 tacaggaacaccctcgcaccctcac 545
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>emb|AL035703.21|HS61A9 Human DNA sequence from clone RP1-61A9 on chromosome 1p35.2-36.13
            Contains a novel gene (KIAA0478) and the EPHA8 gene for
            ephrin receptor EphA8 precursor, complete sequence
          Length = 160705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 294  tacaggaacaccgtcgcaccctcac 318
            |||||||||||| ||||||||||||
Sbjct: 1480 tacaggaacaccctcgcaccctcac 1456
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>emb|AL939118.1|SCO939118 Streptomyces coelicolor A3(2) complete genome; segment 15/29
          Length = 303550

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     acgtcgacgctgaactgctgc 77
              |||||||||||||||||||||
Sbjct: 236766 acgtcgacgctgaactgctgc 236746
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 572     ctcttcaaattgcatattgaa 592
               |||||||||||||||||||||
Sbjct: 2986589 ctcttcaaattgcatattgaa 2986609
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>emb|AJ512827.1|XLA512827 Xenopus laevis partial mRNA for putative OFD1 protein
          Length = 1108

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 559 gcttttgataaatctcttcaaattg 583
           ||||| |||||||||||||||||||
Sbjct: 613 gctttggataaatctcttcaaattg 589
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>emb|CR962125.2| Medicago truncatula chromosome 5 clone mth2-179a9, COMPLETE SEQUENCE
          Length = 113972

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   taacaagaatttcagcattcc 122
             |||||||||||||||||||||
Sbjct: 77939 taacaagaatttcagcattcc 77959
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 572     ctcttcaaattgcatattgaa 592
               |||||||||||||||||||||
Sbjct: 2986533 ctcttcaaattgcatattgaa 2986553
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>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145661

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 572   ctcttcaaattgcatattgaa 592
             |||||||||||||||||||||
Sbjct: 29513 ctcttcaaattgcatattgaa 29493
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>ref|XM_633336.1| Dictyostelium discoideum hypothetical protein (DDB0186216), partial
            mRNA
          Length = 4923

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 564  tgataaatctcttcaaattg 583
            ||||||||||||||||||||
Sbjct: 1631 tgataaatctcttcaaattg 1612
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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBb0004M10, complete sequence
          Length = 152423

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tccccccaaaagaacaaaaa 144
            ||||||||||||||||||||
Sbjct: 2149 tccccccaaaagaacaaaaa 2168
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>gb|AY647312.1| Natronococcus occultus strain MSU4810 16S ribosomal RNA gene,
           partial sequence
          Length = 854

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 416 gacgtacttcccaggcgctttgct 439
           ||||||||||||||||| ||||||
Sbjct: 777 gacgtacttcccaggcggtttgct 754
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>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
             complete sequence
          Length = 138584

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cccaaaagaacaaaaagaat 148
             ||||||||||||||||||||
Sbjct: 97538 cccaaaagaacaaaaagaat 97519
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 125      tccccccaaaagaacaaaaa 144
                ||||||||||||||||||||
Sbjct: 15740349 tccccccaaaagaacaaaaa 15740368
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>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence
          Length = 148114

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   cttttggaaagatctgtatg 483
             ||||||||||||||||||||
Sbjct: 84568 cttttggaaagatctgtatg 84549
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>gb|AC121877.2| Mus musculus BAC clone RP24-127G8 from 7, complete sequence
          Length = 130451

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 602   tctctctttcacagcagttc 621
             ||||||||||||||||||||
Sbjct: 22729 tctctctttcacagcagttc 22710
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>emb|AL391873.15| Human DNA sequence from clone RP11-399N11 on chromosome 13, complete
              sequence
          Length = 161317

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     cgaatatgctataacaagaa 110
              ||||||||||||||||||||
Sbjct: 109142 cgaatatgctataacaagaa 109123
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>emb|AL109807.16|HSJ1185K9 Human DNA sequence from clone RP5-1185K9 on chromosome 20 Contains a
            novel gene, complete sequence
          Length = 114007

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  agaacaaaaagaatctcagc 154
            ||||||||||||||||||||
Sbjct: 9786 agaacaaaaagaatctcagc 9767
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>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete
              sequence
          Length = 178748

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    tccccccaaaagaacaaaaa 144
              ||||||||||||||||||||
Sbjct: 150303 tccccccaaaagaacaaaaa 150322
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 129      cccaaaagaacaaaaagaat 148
                ||||||||||||||||||||
Sbjct: 23893703 cccaaaagaacaaaaagaat 23893684
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 125      tccccccaaaagaacaaaaa 144
                ||||||||||||||||||||
Sbjct: 15734883 tccccccaaaagaacaaaaa 15734902
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 107      agaatttcagcattccaatc 126
                ||||||||||||||||||||
Sbjct: 21378359 agaatttcagcattccaatc 21378378
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>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0496H05
          Length = 147817

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agaatttcagcattccaatc 126
              ||||||||||||||||||||
Sbjct: 100297 agaatttcagcattccaatc 100316
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 389     cagctcgagctgctcaggcg 408
               ||||||||||||||||||||
Sbjct: 6439065 cagctcgagctgctcaggcg 6439046
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>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468H06
          Length = 155031

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   agaatttcagcattccaatc 126
             ||||||||||||||||||||
Sbjct: 19745 agaatttcagcattccaatc 19764
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>ref|XM_319575.2| Anopheles gambiae str. PEST ENSANGP00000006376 (ENSANGG00000004836),
            partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  ggcgctttgctgttctcgat 448
            ||||||||||||||||||||
Sbjct: 1844 ggcgctttgctgttctcgat 1825
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>dbj|AK066065.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055K24, full
            insert sequence
          Length = 2735

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 129  cccaaaagaacaaaaagaat 148
            ||||||||||||||||||||
Sbjct: 2586 cccaaaagaacaaaaagaat 2567
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>emb|AL132865.1|CEY62E10A Caenorhabditis elegans YAC Y62E10A, complete sequence
          Length = 57237

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   tccccccaaaagaacaaaaa 144
             ||||||||||||||||||||
Sbjct: 37614 tccccccaaaagaacaaaaa 37633
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>emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chromosome 2, complete
             sequence
          Length = 198946

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   ccccaaaagaacaaaaagaa 147
             ||||||||||||||||||||
Sbjct: 63823 ccccaaaagaacaaaaagaa 63804
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>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
             sequence
          Length = 216239

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   ccccccaaaagaacaaaaag 145
             ||||||||||||||||||||
Sbjct: 69184 ccccccaaaagaacaaaaag 69165
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>gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosome 7, complete sequence
          Length = 235030

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 602    tctctctttcacagcagttc 621
              ||||||||||||||||||||
Sbjct: 118538 tctctctttcacagcagttc 118519
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>gb|M15347.1|HUMTGPL2 Human Pro-tRNA and Thr-tRNA genes
          Length = 1321

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 505 ctgccagtctcagtgactct 524
           ||||||||||||||||||||
Sbjct: 809 ctgccagtctcagtgactct 790


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,691,514
Number of Sequences: 3902068
Number of extensions: 5691514
Number of successful extensions: 159806
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159480
Number of HSP's gapped (non-prelim): 326
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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