ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags21a19 |
|---|---|
| Clone Library Name | barley_pub |
>PUM2_MOUSE (Q80U58) Pumilio homolog 2| Length = 1066 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 186 DLS*HRDGLVSSQFDNRFLLHMIQHGRPLICCLHISTVRVELL 314 +L H + LV Q+ N + H+++HGRP +S +R ++L Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVL 950
>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)| Length = 1066 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +3 Query: 186 DLS*HRDGLVSSQFDNRFLLHMIQHGRPLICCLHISTVRVELL 314 +L H + LV Q+ N + H+++HGRP +S +R ++L Sbjct: 908 ELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVL 950
>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing| protein 1) Length = 832 Score = 30.4 bits (67), Expect = 3.5 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 83 TNSGFKWTFSYTICKQQKADSQKMKHESVRYIQTRSLLTSRWPS-KFTIRQSVSTTYDPT 259 T++ WT +I ++ +A +KM E Y+ +SL W S K ++SV + + T Sbjct: 45 TDNSLPWTLDSSISEENRAVIEKMLLEEEYYLSNKSLSEKIWLSQKEAEKRSVKSPHKKT 104 Query: 260 RK 265 K Sbjct: 105 GK 106
>CLR4_SCHPO (O60016) Histone-lysine N-methyltransferase, H3 lysine-9 specific| (EC 2.1.1.43) (Histone H3-K9 methyltransferase) (H3-K9-HMTase) (Cryptic loci regulator 4) Length = 490 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = -3 Query: 247 CSRNRLSNCELTRPSRCQERSSLNVPNRFMF 155 C+ + L C+L PSRC+ L+ P F + Sbjct: 260 CNCSSLGGCDLNNPSRCECLDDLDEPTHFAY 290
>PUM1_MOUSE (Q80U78) Pumilio homolog 1| Length = 1189 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 186 DLS*HRDGLVSSQFDNRFLLHMIQHGRP 269 +L H + LV Q+ N + H+++HGRP Sbjct: 1031 ELHQHTEQLVQDQYGNYVIQHVLEHGRP 1058
>PUM1_HUMAN (Q14671) Pumilio homolog 1 (Pumilio-1) (HsPUM)| Length = 1186 Score = 29.6 bits (65), Expect = 6.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 186 DLS*HRDGLVSSQFDNRFLLHMIQHGRP 269 +L H + LV Q+ N + H+++HGRP Sbjct: 1028 ELHQHTEQLVQDQYGNYVIQHVLEHGRP 1055
>CSP9_MOUSE (Q9CZB6) Cofactor required for Sp1 transcriptional activation| subunit 9 Length = 233 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = +3 Query: 15 PXLHSXGAIDKDFXLEVHFVEPLQIQGSNGLFPIQFANNKRQILKK*NMNLLGTFKLDL 191 P S F + + PL+ QG L P+QF + K L+K NM++L F LDL Sbjct: 37 PIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPMQFDHKKE--LRKLNMSILINF-LDL 92
>CSP9_HUMAN (O43513) Cofactor required for Sp1 transcriptional activation| subunit 9 (Transcriptional coactivator CRSP33) (RNA polymerase transcriptional regulation mediator subunit 7 homolog) (hMED7) (Activator-recruited cofactor 34 kDa component) (ARC34) Length = 233 Score = 29.3 bits (64), Expect = 7.8 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = +3 Query: 15 PXLHSXGAIDKDFXLEVHFVEPLQIQGSNGLFPIQFANNKRQILKK*NMNLLGTFKLDL 191 P S F + + PL+ QG L P+QF + K L+K NM++L F LDL Sbjct: 37 PIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPMQFDHKKE--LRKLNMSILINF-LDL 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,562,987 Number of Sequences: 219361 Number of extensions: 1255923 Number of successful extensions: 2529 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2498 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2528 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
