ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20l19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIN1_RAT (P97680) Ras and Rab interactor 1 (Ras interaction/inte... 32 1.6
2FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 1... 30 5.9

>RIN1_RAT (P97680) Ras and Rab interactor 1 (Ras interaction/interference|
           protein 1)
          Length = 774

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 212 QQHTTTPKSKLIHKKSGTGYSIYRHGQRPSDFEVETKRKPSEASQ*NN 355
           Q +   P   L+H+   TGY IYR  +RP     ET+R  +E ++  N
Sbjct: 679 QGYHRLPPEALVHRLPTTGYLIYRRAERP-----ETQRAATEKTKTGN 721



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>FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 16)|
           (Winged-helix transcription factor Trident)
          Length = 760

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 457 PCPLYNTNPY*LASLPFGK--RSHQRRARGGVPRVMIVSLAGFRWFSFGLDLE 305
           P  L N+ P+ LAS PFG     H    + G P + I SL+  R  + GL L+
Sbjct: 670 PRELLNSEPFDLASDPFGSPPPPHVEGPKPGSPELQIPSLSANRSLTEGLVLD 722


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,411,876
Number of Sequences: 219361
Number of extensions: 2088124
Number of successful extensions: 5975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5973
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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