| Clone Name | rbags20l19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 173 tcaatcttgtcactgaatcgaccagacatca 203 |||||||||||| |||||||||||||||||| Sbjct: 103143 tcaatcttgtcattgaatcgaccagacatca 103173 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 597 tgtgtggtcagtctacgacataatttcctggaa 629 ||||||||||||| || |||||| ||||||||| Sbjct: 103590 tgtgtggtcagtcaactacataacttcctggaa 103622
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 173 tcaatcttgtcactgaatcgaccagacatca 203 |||||||||||| |||||||||||||||||| Sbjct: 34649022 tcaatcttgtcattgaatcgaccagacatca 34649052 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 597 tgtgtggtcagtctacgacataatttcctggaa 629 ||||||||||||| || |||||| ||||||||| Sbjct: 34649469 tgtgtggtcagtcaactacataacttcctggaa 34649501
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 173 tcaatcttgtcactgaatcgaccagacatca 203 |||||||||||| |||||||||||||||||| Sbjct: 55123 tcaatcttgtcattgaatcgaccagacatca 55153 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 597 tgtgtggtcagtctacgacataatttcctggaa 629 ||||||||||||| || |||||| ||||||||| Sbjct: 55569 tgtgtggtcagtcaactacataacttcctggaa 55601
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 173 tcaatcttgtcactgaatcgaccagacatca 203 |||||||||||| |||||||||||||||||| Sbjct: 219 tcaatcttgtcattgaatcgaccagacatca 249 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 597 tgtgtggtcagtctacgacataatttcctggaa 629 ||||||||||||| || |||||| ||||||||| Sbjct: 665 tgtgtggtcagtcaactacataacttcctggaa 697
>gb|AC008735.9| Homo sapiens chromosome 19 clone CTD-2537I9, complete sequence Length = 223879 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 571 attcaattgtgtgtttgtattg 592 |||||||||||||||||||||| Sbjct: 87849 attcaattgtgtgtttgtattg 87870
>emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l22, COMPLETE SEQUENCE Length = 112211 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 aactcttcaacaaaaaatggt 131 ||||||||||||||||||||| Sbjct: 109494 aactcttcaacaaaaaatggt 109474
>ref|XM_228612.2| PREDICTED: Rattus norvegicus similar to KIAA1387 protein (LOC302448), mRNA Length = 2133 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 316 gaccaaacgaaaaccatctgaagcc 340 ||||||||||||| ||||||||||| Sbjct: 1929 gaccaaacgaaaatcatctgaagcc 1953
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 gtctttggtggcttctctttc 405 ||||||||||||||||||||| Sbjct: 1721315 gtctttggtggcttctctttc 1721295
>gb|AC124539.4| Mus musculus BAC clone RP23-359M14 from chromosome 12, complete sequence Length = 183684 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 573 tcaattgtgtgtttgtattga 593 ||||||||||||||||||||| Sbjct: 77936 tcaattgtgtgtttgtattga 77956
>ref|NM_111035.3| Arabidopsis thaliana catalytic AT3G01690 mRNA, complete cds Length = 1452 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 1117 tctttggtggcttctctttc 1098
>gb|AC108944.4| Mus musculus BAC clone RP23-114I22 from chromosome 9, complete sequence Length = 198019 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 tgtgtttgtattgagaatgt 599 |||||||||||||||||||| Sbjct: 49174 tgtgtttgtattgagaatgt 49193
>gb|AC132267.3| Mus musculus BAC clone RP24-393E11 from chromosome 9, complete sequence Length = 151285 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 580 tgtgtttgtattgagaatgt 599 |||||||||||||||||||| Sbjct: 148297 tgtgtttgtattgagaatgt 148316
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence Length = 105543 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 80203 tctttggtggcttctctttc 80184
>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence, complete sequence Length = 89154 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 2908 tctttggtggcttctctttc 2889
>gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, complete sequence Length = 226284 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 caatcaataagggttagtgt 441 |||||||||||||||||||| Sbjct: 148 caatcaataagggttagtgt 167
>ref|XM_668441.1| Plasmodium berghei strain ANKA hypothetical protein (PB405871.00.0) partial mRNA Length = 141 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gtgtgtaattgtacatgtat 149 |||||||||||||||||||| Sbjct: 103 gtgtgtaattgtacatgtat 84
>emb|AL354827.5| Human DNA sequence from clone RP11-280J7 on chromosome 13, complete sequence Length = 127641 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 569 ccattcaattgtgtgtttgt 588 |||||||||||||||||||| Sbjct: 41414 ccattcaattgtgtgtttgt 41433
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 512 ggtagcgcgaaaacaagcagcgct 535 ||||||||||||| |||||||||| Sbjct: 2199732 ggtagcgcgaaaagaagcagcgct 2199709
>gb|BT008849.1| Arabidopsis thaliana At3g01690 mRNA, complete cds Length = 1086 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 919 tctttggtggcttctctttc 900
>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence Length = 181162 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 tgagaccagagggaaagaaa 561 |||||||||||||||||||| Sbjct: 8486 tgagaccagagggaaagaaa 8467
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 agtcactgagtggaatcgat 59 |||||||||||||||||||| Sbjct: 35497 agtcactgagtggaatcgat 35478
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172284 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 agtcactgagtggaatcgat 59 |||||||||||||||||||| Sbjct: 90712 agtcactgagtggaatcgat 90731
>gb|AC018684.3| Homo sapiens BAC clone RP11-424H16 from 10, complete sequence Length = 175968 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ttcaacaaaaaatggtgtgt 135 |||||||||||||||||||| Sbjct: 69068 ttcaacaaaaaatggtgtgt 69087
>gb|AC022820.11| Homo sapiens chromosome 8, clone RP11-46G17, complete sequence Length = 180899 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 caacaaaaaatggtgtgtaa 137 |||||||||||||||||||| Sbjct: 29655 caacaaaaaatggtgtgtaa 29674
>gb|AC090539.6| Homo sapiens chromosome 8, clone RP11-759A9, complete sequence Length = 171690 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 caacaaaaaatggtgtgtaa 137 |||||||||||||||||||| Sbjct: 61804 caacaaaaaatggtgtgtaa 61785
>emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in linkage group 19, complete sequence Length = 217898 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 tgtttgtattgagaatgtgt 601 |||||||||||||||||||| Sbjct: 188400 tgtttgtattgagaatgtgt 188419
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 aatggtgtgtaattgtacatgtat 149 ||||||||||| |||||||||||| Sbjct: 22499220 aatggtgtgtacttgtacatgtat 22499197
>emb|BX822610.1|CNS0A62E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZD08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1283 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 1024 tctttggtggcttctctttc 1005
>gb|AC108011.4| Homo sapiens BAC clone RP13-511O19 from 4, complete sequence Length = 81894 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 caacaaaaaatggtgtgtaa 137 |||||||||||||||||||| Sbjct: 55248 caacaaaaaatggtgtgtaa 55229
>emb|BX823457.1|CNS0A4RS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS40ZE07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1389 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 1054 tctttggtggcttctctttc 1035
>gb|BT002425.1| Arabidopsis thaliana unknown protein (At3g01690) mRNA, complete cds Length = 1363 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctttggtggcttctctttc 405 |||||||||||||||||||| Sbjct: 1046 tctttggtggcttctctttc 1027
>gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, complete sequence Length = 244051 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 caatcaataagggttagtgt 441 |||||||||||||||||||| Sbjct: 23499 caatcaataagggttagtgt 23480
>emb|BX640591.4| Zebrafish DNA sequence from clone DKEY-39A18 in linkage group 4, complete sequence Length = 68080 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 583 gtttgtattgagaatgtgtggtca 606 |||||||||| ||||||||||||| Sbjct: 53509 gtttgtattgtgaatgtgtggtca 53532
>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete sequence Length = 317354 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 agtcactgagtggaatcgat 59 |||||||||||||||||||| Sbjct: 1970 agtcactgagtggaatcgat 1989
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 cgaggaacaccgccccgcgctcgt 386 |||||||||||||| ||||||||| Sbjct: 2609987 cgaggaacaccgccacgcgctcgt 2610010
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 aatggtgtgtaattgtacatgtat 149 ||||||||||| |||||||||||| Sbjct: 22427565 aatggtgtgtacttgtacatgtat 22427542
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 aatggtgtgtaattgtacatgtat 149 ||||||||||| |||||||||||| Sbjct: 1799 aatggtgtgtacttgtacatgtat 1776
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 aatggtgtgtaattgtacatgtat 149 ||||||||||| |||||||||||| Sbjct: 8314 aatggtgtgtacttgtacatgtat 8337
>emb|AL844198.7| Mouse DNA sequence from clone RP23-438P13 on chromosome 4, complete sequence Length = 176049 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tggtgtgtaattgtacatgt 147 |||||||||||||||||||| Sbjct: 160270 tggtgtgtaattgtacatgt 160251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,485,850 Number of Sequences: 3902068 Number of extensions: 5485850 Number of successful extensions: 104085 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103893 Number of HSP's gapped (non-prelim): 192 length of query: 631 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 608 effective length of database: 17,143,297,704 effective search space: 10423125004032 effective search space used: 10423125004032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)