ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags20l18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135E20, full insert sequence Length = 1413 Score = 718 bits (362), Expect = 0.0 Identities = 548/608 (90%), Gaps = 4/608 (0%) Strand = Plus / Minus Query: 119 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 178 ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| |||| Sbjct: 1049 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 990 Query: 179 tgatagatgcttgacgtgtcctgttgtatgtcagtgtaagacggtcaagcatttcaccgg 238 ||||||||||||||||||||||||||||||| || || || || |||||||||||||| | Sbjct: 989 tgatagatgcttgacgtgtcctgttgtatgtgagggtgagtcgatcaagcatttcaccag 930 Query: 239 catttctgctggagctgtccatagcagacatacgggcaccaagctcactgcaggcattct 298 | |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| Sbjct: 929 cgtttctgctggagctgtccatggcagacatacgtgctccaagctcactgcatgcattct 870 Query: 299 ctagaacagcattatacataacacaagaaaactggaactcggtaagattctgcaggattt 358 ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 869 ctagagcagcattatacataacacaagaaaactggaactcggtaagattctgaagaattt 810 Query: 359 ctgattttgtttcacctccttcaatttcatacgaatccagctcaccaaccttcccaccag 418 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 809 ctgatttagtttcacctccttcaatttcatatgaatccaggtcaccaacctt---accag 753 Query: 419 attccgattctttctccataacctctggggacagtattgtggccaatgtaggcctaaatg 478 ||||||||||||||||||||||||||||||| ||||| || | || ||| ||| | |||| Sbjct: 752 attccgattctttctccataacctctggggaaagtatggttgtcattgtgggcttgaatg 693 Query: 479 aaatgacagactgaaacttgttaaaaacaactcttatagcatcatattcaacatttttca 538 | ||||| || || ||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct: 692 atatgaccgagtggaacttgttaaaaacaacccttagagcatcatactcaacatttttca 633 Query: 539 agatatcatctgcgagcacagcaacctgtgtgtagttaatagggttcttctgcaactcag 598 ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| Sbjct: 632 agatatcatctgccagcacagcaatctgtgtgtagttgatagggttcttctgcaactcag 573 Query: 599 atactgtcatttcaatatgcttcctggagtcacgggatgagttgaactttccccttttct 658 |||||||||| || || | | | ||||||||| | |||||||||||||| ||||||||| Sbjct: 572 atactgtcatctcgatgttatccttggagtcac-gaatgagttgaactttacccttttct 514 Query: 659 cctaatatgacatacttgctttctttctctggaccagaagtcatcttctggagtgctttg 718 |||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| Sbjct: 513 cctaatatgacatacttgctttctttctctggtccagaagtcaacttgtggagtgctttg 454 Query: 719 ctgacttt 726 |||||||| Sbjct: 453 ctgacttt 446
>emb|AJ417517.1|OSA417517 Oryza sativa partial mRNA for H+-transporting ATP synthase (xd1 gene) Length = 599 Score = 587 bits (296), Expect = e-164 Identities = 442/490 (90%), Gaps = 3/490 (0%) Strand = Plus / Minus Query: 119 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 178 ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| |||| Sbjct: 499 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 440 Query: 179 tgatagatgcttgacgtgtcctgttgtatgtcagtgtaagacggtcaagcatttcaccgg 238 ||||||||||||||||||||||||||||||| || || || || |||||||||||||| | Sbjct: 439 tgatagatgcttgacgtgtcctgttgtatgtgagggtgagtcgatcaagcatttcaccag 380 Query: 239 catttctgctggagctgtccatagcagacatacgggcaccaagctcactgcaggcattct 298 | |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| Sbjct: 379 cgtttctgctggagctgtccatagcagacatacgtgctccaagctcactgcatgcattct 320 Query: 299 ctagaacagcattatacataacacaagaaaactggaactcggtaagattctgcaggattt 358 ||||| |||||||||||| ||||||||||||||||||||||||||||||||| || |||| Sbjct: 319 ctagagcagcattatacacaacacaagaaaactggaactcggtaagattctgaagaattt 260 Query: 359 ctgattttgtttcacctccttcaatttcatacgaatccagctcaccaaccttcccaccag 418 ||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 259 ctgatttagtttcacctccttcaatttcatatgaatccaggtcaccaacctt---accag 203 Query: 419 attccgattctttctccataacctctggggacagtattgtggccaatgtaggcctaaatg 478 ||||||||||||||||||||||||||||||| ||||| || | || ||| ||| | |||| Sbjct: 202 attccgattctttctccataacctctggggaaagtatggttgtcattgtgggcttgaatg 143 Query: 479 aaatgacagactgaaacttgttaaaaacaactcttatagcatcatattcaacatttttca 538 | ||||| || || ||||||||||||||||| |||| ||||||||| ||||||||||||| Sbjct: 142 atatgaccgagtggaacttgttaaaaacaacccttagagcatcatactcaacatttttca 83 Query: 539 agatatcatctgcgagcacagcaacctgtgtgtagttaatagggttcttctgcaactcag 598 ||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||| Sbjct: 82 agatatcatctgccagcacagcaatctgtgtgtagttgatagggctcttctgcaactcag 23 Query: 599 atactgtcat 608 |||||||||| Sbjct: 22 atactgtcat 13
>ref|NM_195647.1| Oryza sativa (japonica cultivar-group) putative ATP synthase gamma chain, mitochondrial precursor (OSJNBa0053D03.10), mRNA Length = 1107 Score = 504 bits (254), Expect = e-139 Identities = 388/432 (89%), Gaps = 3/432 (0%) Strand = Plus / Minus Query: 131 atccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgctt 190 |||||||||| ||||| || || || || |||||| ||||||| |||||||||||||||| Sbjct: 1105 atccctcaagggcagaagcgccagagataatctcaatgagctctgtagtgatagatgctt 1046 Query: 191 gacgtgtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctgg 250 ||||||||||||||||||| || || || || |||||||||||||| || |||||||||| Sbjct: 1045 gacgtgtcctgttgtatgtgagggtgagtcgatcaagcatttcaccagcgtttctgctgg 986 Query: 251 agctgtccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcat 310 |||||||||| ||||||||||| || |||||||||||||| |||||||||||| |||||| Sbjct: 985 agctgtccatggcagacatacgtgctccaagctcactgcatgcattctctagagcagcat 926 Query: 311 tatacataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgttt 370 |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct: 925 tatacataacacaagaaaactggaactcggtaagattctgaagaatttctgatttagttt 866 Query: 371 cacctccttcaatttcatacgaatccagctcaccaaccttcccaccagattccgattctt 430 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 865 cacctccttcaatttcatatgaatccaggtcaccaacctt---accagattccgattctt 809 Query: 431 tctccataacctctggggacagtattgtggccaatgtaggcctaaatgaaatgacagact 490 ||||||||||||||||||| ||||| || | || ||| ||| | ||||| ||||| || | Sbjct: 808 tctccataacctctggggaaagtatggttgtcattgtgggcttgaatgatatgaccgagt 749 Query: 491 gaaacttgttaaaaacaactcttatagcatcatattcaacatttttcaagatatcatctg 550 | ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| Sbjct: 748 ggaacttgttaaaaacaacccttagagcatcatactcaacatttttcaagatatcatctg 689 Query: 551 cgagcacagcaa 562 | |||||||||| Sbjct: 688 ccagcacagcaa 677 Score = 206 bits (104), Expect = 7e-50 Identities = 150/164 (91%), Gaps = 1/164 (0%) Strand = Plus / Minus Query: 563 cctgtgtgtagttaatagggttcttctgcaactcagatactgtcatttcaatatgcttcc 622 ||||||||||||| |||||||||||||||||||||||||||||||| || || | | | Sbjct: 580 cctgtgtgtagttgatagggttcttctgcaactcagatactgtcatctcgatgttatcct 521 Query: 623 tggagtcacgggatgagttgaactttccccttttctcctaatatgacatacttgctttct 682 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 520 tggagtcacga-atgagttgaactttacccttttctcctaatatgacatacttgctttct 462 Query: 683 ttctctggaccagaagtcatcttctggagtgctttgctgacttt 726 |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct: 461 ttctctggtccagaagtcaacttgtggagtgctttgctgacttt 418
>gb|AY108441.1| Zea mays PCO083558 mRNA sequence Length = 1514 Score = 389 bits (196), Expect = e-105 Identities = 481/571 (84%), Gaps = 5/571 (0%) Strand = Plus / Minus Query: 133 ccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttga 192 |||||||| || || ||||| ||||| |||||||| ||||| || ||||| |||||||| Sbjct: 1065 ccctcaagggccgatgcaccagatataatctcagtaagctctgtggtgatggatgcttgg 1006 Query: 193 cgtgtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggag 252 |||||||||||||| || || || ||||| |||||||| || || ||||||||||| ||| Sbjct: 1005 cgtgtcctgttgtaagtgagagtgagacgatcaagcatatcgccagcatttctgctagag 946 Query: 253 ctgtccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcatta 312 |||||||| |||||||||||||| |||||||||||||| ||||||||||| || |||| Sbjct: 945 ctgtccatggcagacatacgggctccaagctcactgcatgcattctctagggcaccattg 886 Query: 313 tacataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttca 372 ||||| |||||||||||||||||||| | |||||||||| || ||||||||||| || Sbjct: 885 tacatgacacaagaaaactggaactcagctagattctgcaaaatctctgattttgtctcg 826 Query: 373 cctccttcaatttcatacgaatccagctcaccaaccttcccaccagattccgattctttc 432 || |||||||| ||||| ||||| || ||||| | ||||||||||| ||| |||||||| Sbjct: 825 ccgccttcaatctcataagaatctaggtcacccatcttcccaccagcttctgattctttt 766 Query: 433 tccataacctctggggacagtattgtggccaatgtaggcctaaatgaaatgacagactga 492 || |||||| ||||| |||||||| ||| ||| ||| |||| || |||||||| || Sbjct: 765 tctgcaacctcgggggaaagtattgttaccattgtgggcttaaacgatatgacagattgg 706 Query: 493 aacttgttaaaaacaactcttatagcatcatattcaacatttttcaagatatcatctgcg 552 |||||||| |||| ||| || | |||||||||||| ||||||||||| || ||||| ||| Sbjct: 705 aacttgttgaaaataaccctcagagcatcatattccacatttttcaatatgtcatccgcg 646 Query: 553 agcacagcaacctgtgtgtagttaatagggttcttctgcaactcagatactgtcatttca 612 ||||| ||||||||||||||||| |||||||||||||||| |||| | | ||||||||| Sbjct: 645 agcacggcaacctgtgtgtagttgatagggttcttctgcagttcagttgcagtcatttca 586 Query: 613 atatgct-tcctg-gagtcacgggatgagttgaactttccccttttctcctaatatgaca 670 ||||| |||| |||||||| | || |||||||| ||||||||||||||||| ||| Sbjct: 585 --atgctgtcctttgagtcacgcaac-agctgaactttgcccttttctcctaatataaca 529 Query: 671 tacttgctttctttctctggaccagaagtca 701 |||||| ||||||| ||||||||||| |||| Sbjct: 528 tacttggtttctttttctggaccagatgtca 498
>gb|BT018752.1| Zea mays clone EL01N0523B01.d mRNA sequence Length = 1345 Score = 234 bits (118), Expect = 3e-58 Identities = 378/464 (81%), Gaps = 8/464 (1%) Strand = Plus / Minus Query: 131 atccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgctt 190 |||| ||||| || || ||||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct: 1039 atccttcaagggctgatgcaccagatataatctcagtaagctctgtggtgatggatgctt 980 Query: 191 gacgtgtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctgg 250 | |||||||||||||| || || || ||||| |||||| | | || ||||||||||| | Sbjct: 979 ggcgtgtcctgttgtaagtaagcgtgagacgatcaagcctattacgagcatttctgctag 920 Query: 251 agctgtccatagcagaca----tacgggcaccaagctcactgcaggcattctctagaaca 306 |||||||||| ||||||| || || ||||||||||||| ||||||||||| || Sbjct: 919 agctgtccatggcagacacttttaagg----caagctcactgcatgcattctctagggca 864 Query: 307 gcattatacataacacaagaaaactggaactcggtaagattctgcaggatttctgatttt 366 |||| ||||| |||||||||||||||||||| | || || |||| || |||| |||| Sbjct: 863 ccattgtacatgacacaagaaaactggaactcagctaggttttgcaatatctctgctttt 804 Query: 367 gtttcacctccttcaatttcatacgaatccagctcaccaaccttcccaccagattccgat 426 || ||||| |||||||| ||||| |||| || ||||| ||||||||||| ||| | | Sbjct: 803 gtctcaccgccttcaatctcataagaatttaggtcacccgtcttcccaccagcttctgct 744 Query: 427 tctttctccataacctctggggacagtattgtggccaatgtaggcctaaatgaaatgaca 486 ||||| || |||||| ||||||||||| || ||| ||| ||| |||| || |||||| Sbjct: 743 tctttttctgcaacctcaggggacagtatcgttaccattgtgggcttaaacgatatgaca 684 Query: 487 gactgaaacttgttaaaaacaactcttatagcatcatattcaacatttttcaagatatca 546 || || |||||||| |||| ||| |||| |||||||||||| ||||||||||| || ||| Sbjct: 683 gaatggaacttgttgaaaataacccttagagcatcatattccacatttttcaatatgtca 624 Query: 547 tctgcgagcacagcaacctgtgtgtagttaatagggttcttctg 590 || ||||||||||||| |||||| ||||| |||||||||||||| Sbjct: 623 tccgcgagcacagcaatctgtgtatagttgatagggttcttctg 580 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 641 tgaactttccccttttctcctaatatgacatacttgctttctttctctggaccagaagtc 700 |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 530 tgaactttgcctttttctcctaatataacatacttgctttctttttctggaccagatgtc 471 Query: 701 a 701 | Sbjct: 470 a 470
>gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0053D03, complete sequence Length = 150496 Score = 178 bits (90), Expect = 2e-41 Identities = 116/124 (93%), Gaps = 3/124 (2%) Strand = Plus / Minus Query: 319 acacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacctcct 378 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 23334 acacaagaaaactggaactcggtaagattctgaagaatttctgatttagtttcacctcct 23275 Query: 379 tcaatttcatacgaatccagctcaccaaccttcccaccagattccgattctttctccata 438 ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 23274 tcaatttcatatgaatccaggtcaccaacctt---accagattccgattctttctccata 23218 Query: 439 acct 442 |||| Sbjct: 23217 acct 23214 Score = 161 bits (81), Expect = 4e-36 Identities = 118/129 (91%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 562 acctgtgtgtagttaatagggttcttctgcaactcagatactgtcatttcaatatgcttc 621 |||||||||||||| |||||||||||||||||||||||||||||||| || || | | | Sbjct: 21300 acctgtgtgtagttgatagggttcttctgcaactcagatactgtcatctcgatgttatcc 21241 Query: 622 ctggagtcacgggatgagttgaactttccccttttctcctaatatgacatacttgctttc 681 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 21240 ttggagtcacga-atgagttgaactttacccttttctcctaatatgacatacttgctttc 21182 Query: 682 tttctctgg 690 ||||||||| Sbjct: 21181 tttctctgg 21173 Score = 149 bits (75), Expect = 2e-32 Identities = 111/123 (90%) Strand = Plus / Minus Query: 198 cctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctgtc 257 |||||||||||| || || || || |||||||||||||| || ||||||||||||||||| Sbjct: 23627 cctgttgtatgtgagggtgagtcgatcaagcatttcaccagcgtttctgctggagctgtc 23568 Query: 258 catagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatacat 317 ||| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 23567 catggcagacatacgtgctccaagctcactgcatgcattctctagagcagcattatacat 23508 Query: 318 aac 320 ||| Sbjct: 23507 aac 23505 Score = 119 bits (60), Expect = 1e-23 Identities = 108/124 (87%) Strand = Plus / Minus Query: 439 acctctggggacagtattgtggccaatgtaggcctaaatgaaatgacagactgaaacttg 498 ||||||||||| ||||| || | || ||| ||| | ||||| ||||| || || |||||| Sbjct: 23125 acctctggggaaagtatggttgtcattgtgggcttgaatgatatgaccgagtggaacttg 23066 Query: 499 ttaaaaacaactcttatagcatcatattcaacatttttcaagatatcatctgcgagcaca 558 ||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 23065 ttaaaaacaacccttagagcatcatactcaacatttttcaagatatcatctgccagcaca 23006 Query: 559 gcaa 562 |||| Sbjct: 23005 gcaa 23002 Score = 93.7 bits (47), Expect = 8e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 119 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 178 ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| |||| Sbjct: 24040 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 23981 Query: 179 tgatagatgcttgacgtgtcctg 201 ||||||||||||||||||||||| Sbjct: 23980 tgatagatgcttgacgtgtcctg 23958 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 691 accagaagtcatcttctggagtgctttgctgacttt 726 ||||||||||| ||| |||||||||||||||||||| Sbjct: 21093 accagaagtcaacttgtggagtgctttgctgacttt 21058
>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053D03, from chromosome 10, complete sequence Length = 199113 Score = 178 bits (90), Expect = 2e-41 Identities = 116/124 (93%), Gaps = 3/124 (2%) Strand = Plus / Plus Query: 319 acacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacctcct 378 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 36667 acacaagaaaactggaactcggtaagattctgaagaatttctgatttagtttcacctcct 36726 Query: 379 tcaatttcatacgaatccagctcaccaaccttcccaccagattccgattctttctccata 438 ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 36727 tcaatttcatatgaatccaggtcaccaacctt---accagattccgattctttctccata 36783 Query: 439 acct 442 |||| Sbjct: 36784 acct 36787 Score = 161 bits (81), Expect = 4e-36 Identities = 118/129 (91%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 562 acctgtgtgtagttaatagggttcttctgcaactcagatactgtcatttcaatatgcttc 621 |||||||||||||| |||||||||||||||||||||||||||||||| || || | | | Sbjct: 38701 acctgtgtgtagttgatagggttcttctgcaactcagatactgtcatctcgatgttatcc 38760 Query: 622 ctggagtcacgggatgagttgaactttccccttttctcctaatatgacatacttgctttc 681 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 38761 ttggagtcacga-atgagttgaactttacccttttctcctaatatgacatacttgctttc 38819 Query: 682 tttctctgg 690 ||||||||| Sbjct: 38820 tttctctgg 38828 Score = 149 bits (75), Expect = 2e-32 Identities = 111/123 (90%) Strand = Plus / Plus Query: 198 cctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctgtc 257 |||||||||||| || || || || |||||||||||||| || ||||||||||||||||| Sbjct: 36374 cctgttgtatgtgagggtgagtcgatcaagcatttcaccagcgtttctgctggagctgtc 36433 Query: 258 catagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatacat 317 ||| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 36434 catggcagacatacgtgctccaagctcactgcatgcattctctagagcagcattatacat 36493 Query: 318 aac 320 ||| Sbjct: 36494 aac 36496 Score = 119 bits (60), Expect = 1e-23 Identities = 108/124 (87%) Strand = Plus / Plus Query: 439 acctctggggacagtattgtggccaatgtaggcctaaatgaaatgacagactgaaacttg 498 ||||||||||| ||||| || | || ||| ||| | ||||| ||||| || || |||||| Sbjct: 36876 acctctggggaaagtatggttgtcattgtgggcttgaatgatatgaccgagtggaacttg 36935 Query: 499 ttaaaaacaactcttatagcatcatattcaacatttttcaagatatcatctgcgagcaca 558 ||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 36936 ttaaaaacaacccttagagcatcatactcaacatttttcaagatatcatctgccagcaca 36995 Query: 559 gcaa 562 |||| Sbjct: 36996 gcaa 36999 Score = 93.7 bits (47), Expect = 8e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 119 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 178 ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| |||| Sbjct: 35961 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 36020 Query: 179 tgatagatgcttgacgtgtcctg 201 ||||||||||||||||||||||| Sbjct: 36021 tgatagatgcttgacgtgtcctg 36043 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 691 accagaagtcatcttctggagtgctttgctgacttt 726 ||||||||||| ||| |||||||||||||||||||| Sbjct: 38908 accagaagtcaacttgtggagtgctttgctgacttt 38943
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 178 bits (90), Expect = 2e-41 Identities = 116/124 (93%), Gaps = 3/124 (2%) Strand = Plus / Minus Query: 319 acacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacctcct 378 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 8219812 acacaagaaaactggaactcggtaagattctgaagaatttctgatttagtttcacctcct 8219753 Query: 379 tcaatttcatacgaatccagctcaccaaccttcccaccagattccgattctttctccata 438 ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 8219752 tcaatttcatatgaatccaggtcaccaacctt---accagattccgattctttctccata 8219696 Query: 439 acct 442 |||| Sbjct: 8219695 acct 8219692 Score = 161 bits (81), Expect = 4e-36 Identities = 118/129 (91%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 562 acctgtgtgtagttaatagggttcttctgcaactcagatactgtcatttcaatatgcttc 621 |||||||||||||| |||||||||||||||||||||||||||||||| || || | | | Sbjct: 8217778 acctgtgtgtagttgatagggttcttctgcaactcagatactgtcatctcgatgttatcc 8217719 Query: 622 ctggagtcacgggatgagttgaactttccccttttctcctaatatgacatacttgctttc 681 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 8217718 ttggagtcacga-atgagttgaactttacccttttctcctaatatgacatacttgctttc 8217660 Query: 682 tttctctgg 690 ||||||||| Sbjct: 8217659 tttctctgg 8217651 Score = 149 bits (75), Expect = 2e-32 Identities = 111/123 (90%) Strand = Plus / Minus Query: 198 cctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctgtc 257 |||||||||||| || || || || |||||||||||||| || ||||||||||||||||| Sbjct: 8220105 cctgttgtatgtgagggtgagtcgatcaagcatttcaccagcgtttctgctggagctgtc 8220046 Query: 258 catagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatacat 317 ||| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 8220045 catggcagacatacgtgctccaagctcactgcatgcattctctagagcagcattatacat 8219986 Query: 318 aac 320 ||| Sbjct: 8219985 aac 8219983 Score = 119 bits (60), Expect = 1e-23 Identities = 108/124 (87%) Strand = Plus / Minus Query: 439 acctctggggacagtattgtggccaatgtaggcctaaatgaaatgacagactgaaacttg 498 ||||||||||| ||||| || | || ||| ||| | ||||| ||||| || || |||||| Sbjct: 8219603 acctctggggaaagtatggttgtcattgtgggcttgaatgatatgaccgagtggaacttg 8219544 Query: 499 ttaaaaacaactcttatagcatcatattcaacatttttcaagatatcatctgcgagcaca 558 ||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 8219543 ttaaaaacaacccttagagcatcatactcaacatttttcaagatatcatctgccagcaca 8219484 Query: 559 gcaa 562 |||| Sbjct: 8219483 gcaa 8219480 Score = 93.7 bits (47), Expect = 8e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 119 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 178 ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| |||| Sbjct: 8220518 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 8220459 Query: 179 tgatagatgcttgacgtgtcctg 201 ||||||||||||||||||||||| Sbjct: 8220458 tgatagatgcttgacgtgtcctg 8220436 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 691 accagaagtcatcttctggagtgctttgctgacttt 726 ||||||||||| ||| |||||||||||||||||||| Sbjct: 8217571 accagaagtcaacttgtggagtgctttgctgacttt 8217536
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 178 bits (90), Expect = 2e-41 Identities = 116/124 (93%), Gaps = 3/124 (2%) Strand = Plus / Minus Query: 319 acacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacctcct 378 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 8224911 acacaagaaaactggaactcggtaagattctgaagaatttctgatttagtttcacctcct 8224852 Query: 379 tcaatttcatacgaatccagctcaccaaccttcccaccagattccgattctttctccata 438 ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 8224851 tcaatttcatatgaatccaggtcaccaacctt---accagattccgattctttctccata 8224795 Query: 439 acct 442 |||| Sbjct: 8224794 acct 8224791 Score = 161 bits (81), Expect = 4e-36 Identities = 118/129 (91%), Gaps = 1/129 (0%) Strand = Plus / Minus Query: 562 acctgtgtgtagttaatagggttcttctgcaactcagatactgtcatttcaatatgcttc 621 |||||||||||||| |||||||||||||||||||||||||||||||| || || | | | Sbjct: 8222877 acctgtgtgtagttgatagggttcttctgcaactcagatactgtcatctcgatgttatcc 8222818 Query: 622 ctggagtcacgggatgagttgaactttccccttttctcctaatatgacatacttgctttc 681 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 8222817 ttggagtcacga-atgagttgaactttacccttttctcctaatatgacatacttgctttc 8222759 Query: 682 tttctctgg 690 ||||||||| Sbjct: 8222758 tttctctgg 8222750 Score = 149 bits (75), Expect = 2e-32 Identities = 111/123 (90%) Strand = Plus / Minus Query: 198 cctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctgtc 257 |||||||||||| || || || || |||||||||||||| || ||||||||||||||||| Sbjct: 8225204 cctgttgtatgtgagggtgagtcgatcaagcatttcaccagcgtttctgctggagctgtc 8225145 Query: 258 catagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatacat 317 ||| ||||||||||| || |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 8225144 catggcagacatacgtgctccaagctcactgcatgcattctctagagcagcattatacat 8225085 Query: 318 aac 320 ||| Sbjct: 8225084 aac 8225082 Score = 119 bits (60), Expect = 1e-23 Identities = 108/124 (87%) Strand = Plus / Minus Query: 439 acctctggggacagtattgtggccaatgtaggcctaaatgaaatgacagactgaaacttg 498 ||||||||||| ||||| || | || ||| ||| | ||||| ||||| || || |||||| Sbjct: 8224702 acctctggggaaagtatggttgtcattgtgggcttgaatgatatgaccgagtggaacttg 8224643 Query: 499 ttaaaaacaactcttatagcatcatattcaacatttttcaagatatcatctgcgagcaca 558 ||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 8224642 ttaaaaacaacccttagagcatcatactcaacatttttcaagatatcatctgccagcaca 8224583 Query: 559 gcaa 562 |||| Sbjct: 8224582 gcaa 8224579 Score = 93.7 bits (47), Expect = 8e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 119 agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 178 ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| |||| Sbjct: 8225617 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 8225558 Query: 179 tgatagatgcttgacgtgtcctg 201 ||||||||||||||||||||||| Sbjct: 8225557 tgatagatgcttgacgtgtcctg 8225535 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 691 accagaagtcatcttctggagtgctttgctgacttt 726 ||||||||||| ||| |||||||||||||||||||| Sbjct: 8222670 accagaagtcaacttgtggagtgctttgctgacttt 8222635
>dbj|D14699.1|IPBF1ATPG Ipomoea batatas mRNA for F1-ATPase gammma subunit, complete cds Length = 1389 Score = 176 bits (89), Expect = 7e-41 Identities = 338/421 (80%) Strand = Plus / Minus Query: 178 gtgatagatgcttgacgtgtcctgttgtatgtcagtgtaagacggtcaagcatttcaccg 237 ||||||||||||||||| || |||||||| || || || || || |||||||||||||| Sbjct: 1010 gtgatagatgcttgacgggttctgttgtaagtgagggtgaggcgatcaagcatttcacca 951 Query: 238 gcatttctgctggagctgtccatagcagacatacgggcaccaagctcactgcaggcattc 297 ||||| ||||||||||||||||| |||||||| | || || |||||||||| |||||| Sbjct: 950 gcattcctgctggagctgtccatggcagacatccttgccccttgctcactgcaagcattc 891 Query: 298 tctagaacagcattatacataacacaagaaaactggaactcggtaagattctgcaggatt 357 |||||||||||||| ||| |||| ||||| ||||| || || |||||||| |||| | Sbjct: 890 tctagaacagcattgaacaatacacttgaaaattggaattcagtgagattctgaaggact 831 Query: 358 tctgattttgtttcacctccttcaatttcatacgaatccagctcaccaaccttcccacca 417 ||||| |||| ||| | |||||||||||||| ||||||| || |||| ||| || ||| Sbjct: 830 tctgactttgactcagcaccttcaatttcataagaatccaaatcgccaagctttccccca 771 Query: 418 gattccgattctttctccataacctctggggacagtattgtggccaatgtaggcctaaat 477 ||||| |||||| |||||| |||||| || || | || || | || || ||| |||| Sbjct: 770 gattcagattctctctccacaacctcaggtgataatacagtagacatggttggcacaaat 711 Query: 478 gaaatgacagactgaaacttgttaaaaacaactcttatagcatcatattcaacatttttc 537 || | || ||||| |||||||| ||||||| ||||| ||||||| | || |||||||| Sbjct: 710 gagacaactgactggaacttgttgaaaacaattcttagagcatcaaactctacattttta 651 Query: 538 aagatatcatctgcgagcacagcaacctgtgtgtagttaatagggttcttctgcaactca 597 | ||| ||||| || | ||| | ||||| || ||||| | ||| ||||||||||||||| Sbjct: 650 aggatgtcatcagcaaccactgagacctgagtatagttgagaggattcttctgcaactca 591 Query: 598 g 598 | Sbjct: 590 g 590
>dbj|AB194067.1| Ipomoea nil mRNA for mitochondrial F1-ATPase gamma subunit, complete cds Length = 1412 Score = 172 bits (87), Expect = 1e-39 Identities = 234/283 (82%) Strand = Plus / Minus Query: 154 gatatgatctcagtgagctccgtagtgatagatgcttgacgtgtcctgttgtatgtcagt 213 ||||||||||| || || || || ||||||||||||||||| || |||||||| || || Sbjct: 1033 gatatgatctctgtcagttctgtggtgatagatgcttgacgggttctgttgtaagtgagg 974 Query: 214 gtaagacggtcaagcatttcaccggcatttctgctggagctgtccatagcagacatacgg 273 || || || |||||||||||||| ||||| ||||||||||||||||| |||||||| | Sbjct: 973 gtgaggcgatcaagcatttcaccagcattcctgctggagctgtccatggcagacatcctt 914 Query: 274 gcaccaagctcactgcaggcattctctagaacagcattatacataacacaagaaaactgg 333 || || |||||||||| |||||||||||||||||||| |||| ||||| ||||| ||| Sbjct: 913 gccccttgctcactgcaagcattctctagaacagcattgaacattacacatgaaaattgg 854 Query: 334 aactcggtaagattctgcaggatttctgattttgtttcacctccttcaatttcatacgaa 393 || || || |||||||| || | |||||| |||| ||| | |||||||||||||| ||| Sbjct: 853 aattcagtgagattctgaagtacttctgactttgactcagcaccttcaatttcataagaa 794 Query: 394 tccagctcaccaaccttcccaccagattccgattctttctcca 436 |||| || || | ||| || |||||||| |||||| |||||| Sbjct: 793 tccaaatcgccgagctttcccccagattcagattctctctcca 751 Score = 56.0 bits (28), Expect = 2e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 487 gactgaaacttgttaaaaacaactcttatagcatcatattcaacatttttcaagatatca 546 ||||| |||||||| ||||||| ||||| ||||||| | || |||||||| | ||| ||| Sbjct: 700 gactggaacttgttgaaaacaattcttagagcatcaaactctacatttttaaggatgtca 641 Query: 547 tctgcgagcacagcaacctgtgtgtagttaatagggttcttctgcaactcag 598 || || | ||| | ||||| || ||||| | ||| |||||||||||||||| Sbjct: 640 tcagcaaccactgagacctgagtatagttgagaggattcttctgcaactcag 589
>ref|NM_128864.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational mechanism / hydrogen-transporting ATPase, rotational mechanism AT2G33040 mRNA, complete cds Length = 1309 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1098 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1039 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 1038 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 979 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 978 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 919 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 918 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 859 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 858 ccttcaatctcatatgagtcaagctcgccaa 828
>gb|BT000409.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) (At2g33040) mRNA, complete cds Length = 1092 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 965 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 906 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 905 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 846 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 845 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 786 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 785 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 726 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 725 ccttcaatctcatatgagtcaagctcgccaa 695
>gb|AY136289.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) (At2g33040) mRNA, complete cds Length = 1265 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1053 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 994 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 993 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 934 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 933 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 874 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 873 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 814 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 813 ccttcaatctcatatgagtcaagctcgccaa 783
>gb|AY102152.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, complete cds Length = 978 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 965 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 906 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 905 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 846 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 845 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 786 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 785 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 726 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 725 ccttcaatctcatatgagtcaagctcgccaa 695
>gb|AY062627.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit (ATP3_ARATH) (At2g33040; F25I18.22) mRNA, complete cds Length = 1360 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1064 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1005 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 1004 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 945 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 944 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 885 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 884 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 825 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 824 ccttcaatctcatatgagtcaagctcgccaa 794
>gb|AY039513.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, complete cds Length = 1238 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1051 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 992 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 991 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 932 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 931 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 872 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 871 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 812 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 811 ccttcaatctcatatgagtcaagctcgccaa 781
>emb|BX819675.1|CNS0A9BS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1205 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1068 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1009 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 1008 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 949 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 948 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 889 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 888 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 829 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 828 ccttcaatctcatatgagtcaagctcgccaa 798
>gb|AY086685.1| Arabidopsis thaliana clone 26812 mRNA, complete sequence Length = 1310 Score = 141 bits (71), Expect = 4e-30 Identities = 221/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1098 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1039 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 1038 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 979 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 978 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 919 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 918 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 859 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 |||||||| ||||| || || ||||| |||| Sbjct: 858 ccttcaatctcatatgagtcaagctcgccaa 828
>dbj|D88374.1| Arabidopsis thaliana mRNA for gamma subunit of mitochondrial F1-ATPase, complete cds Length = 1267 Score = 133 bits (67), Expect = 9e-28 Identities = 220/271 (81%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 1039 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 980 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 979 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 920 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| || Sbjct: 919 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcattgaac 860 Query: 316 ataacacaagaaaactggaactcggtaagattctgcaggatttctgattttgtttcacct 375 || |||||||| || |||||||||| |||||||||| |||||| |||||||| || Sbjct: 859 atcacacaagagaattggaactcggccagattctgcaatatttctccctttgtttcccca 800 Query: 376 ccttcaatttcatacgaatccagctcaccaa 406 || ||||| ||||| || || ||||| |||| Sbjct: 799 ccctcaatctcatatgagtcaagctcgccaa 769
>gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 genomic sequence, complete sequence Length = 96801 Score = 103 bits (52), Expect = 8e-19 Identities = 145/176 (82%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 4494 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 4435 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 4434 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 4375 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcatt 311 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| Sbjct: 4374 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcatt 4319
>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete sequence Length = 93158 Score = 103 bits (52), Expect = 8e-19 Identities = 145/176 (82%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| Sbjct: 81469 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 81410 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 |||||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 81409 gtcctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 81350 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcatt 311 ||||| |||||||| | || || | |||||| || |||||||| ||||| ||||| Sbjct: 81349 tccatggcagacattcttgctcccatctcactacatgcattctccagaaccgcatt 81294
>gb|AF023858.1|AF023858 Solanum tuberosum ATP synthase gamma chain mRNA, nuclear gene encoding mitochondrial protein, partial cds Length = 718 Score = 103 bits (52), Expect = 8e-19 Identities = 100/116 (86%) Strand = Plus / Minus Query: 154 gatatgatctcagtgagctccgtagtgatagatgcttgacgtgtcctgttgtatgtcagt 213 |||||||||||| | ||||| || ||||||||||||||||| || |||||||| || || Sbjct: 475 gatatgatctcaatcagctctgtggtgatagatgcttgacgggttctgttgtaagtaaga 416 Query: 214 gtaagacggtcaagcatttcaccggcatttctgctggagctgtccatagcagacat 269 || ||||| |||||||| ||| |||||||||||||||| || ||||| |||||||| Sbjct: 415 gtgagacgatcaagcatgtcaacggcatttctgctggaactatccatggcagacat 360 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 517 gcatcatattcaacatttttcaagatatcatctgcgagcacagcaacctgtgtgtagtta 576 |||||| |||||||||| |||||||| | |||||| | ||||| ||||||||| |||||| Sbjct: 112 gcatcaaattcaacattcttcaagatgtaatctgccatcacagaaacctgtgtatagtta 53 Query: 577 atagggttcttctgcaactcag 598 | ||| || ||||||||||||| Sbjct: 52 agaggatttttctgcaactcag 31
>emb|BX820526.1|CNS0A9P1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH44ZD12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 87.7 bits (44), Expect = 5e-14 Identities = 173/216 (80%) Strand = Plus / Minus Query: 136 tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 195 ||||||||||| || || || || || ||| ||||||| || |||||||| |||||||| Sbjct: 1080 tcaagagcagaagctccagagataatgtcaatgagctctgttgtgatagaagcttgacga 1021 Query: 196 gtcctgttgtatgtcagtgtaagacggtcaagcatttcaccggcatttctgctggagctg 255 || ||||||||||| || || |||||||| |||||||| || || |||||||| |||||| Sbjct: 1020 gttctgttgtatgtgagggtgagacggtcgagcatttctcctgcgtttctgcttgagctg 961 Query: 256 tccatagcagacatacgggcaccaagctcactgcaggcattctctagaacagcattatac 315 | ||| ||||| || | || || | || ||| || |||||| | ||||| ||||| || Sbjct: 960 ttcatggcagagattcttgcgcccatctgactacatgcattcgccagaaccgcattgaac 901 Query: 316 ataacacaagaaaactggaactcggtaagattctgc 351 || ||| |||| || |||||||||| ||||||||| Sbjct: 900 atgacagaagagaattggaactcggccagattctgc 865
>emb|AJ005366.1|ATA005366 Aesculus turbinata microsatellite DNA, locus AT7D8 Length = 408 Score = 81.8 bits (41), Expect = 3e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 217 agacggtcaagcatttcaccggcatttctgctggagctgtccatagcagacatacgggca 276 |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| | || Sbjct: 244 agacggtcaagcatttcaccagcatttctgcttgagctatccatggcagacatccttgct 185 Query: 277 ccaagctcactgcaggcattctcta 301 || |||||||||| |||||||||| Sbjct: 184 ccttgctcactgcaagcattctcta 160
>gb|AY375344.1| Gossypium barbadense fiber protein Fb33 mRNA, partial cds Length = 1083 Score = 77.8 bits (39), Expect = 5e-11 Identities = 216/275 (78%) Strand = Plus / Minus Query: 154 gatatgatctcagtgagctccgtagtgatagatgcttgacgtgtcctgttgtatgtcagt 213 ||||| |||||| | | |||||| | ||| || |||||||| || ||||| ||||| || Sbjct: 784 gatataatctcaatcaactccgtggggattgaagcttgacgggttctgttatatgtaaga 725 Query: 214 gtaagacggtcaagcatttcaccggcatttctgctggagctgtccatagcagacatacgg 273 || || | |||||||| || ||||| |||||||| ||||| |||||||||||||| | Sbjct: 724 gtcaggggatcaagcatgtcgccggcgtttctgcttgagctatccatagcagacatcctt 665 Query: 274 gcaccaagctcactgcaggcattctctagaacagcattatacataacacaagaaaactgg 333 || || ||||||| || |||||||| | ||| ||||| |||| |||||||| |||||| Sbjct: 664 gctccttgctcactacaagcattctccaaaaccgcattgaacatgacacaagagaactgg 605 Query: 334 aactcggtaagattctgcaggatttctgattttgtttcacctccttcaatttcatacgaa 393 ||||| | ||||| || || ||||| ||||| ||||| || |||| |||||| || Sbjct: 604 aactcagccagattttgaagtatttcaccctttgtctcaccaccctcaacttcataggag 545 Query: 394 tccagctcaccaaccttcccaccagattccgattc 428 || || ||||||| ||| || |||||||| ||||| Sbjct: 544 tctagttcaccaagctttcccccagattcagattc 510
>emb|CR405682.23| Zebrafish DNA sequence from clone DKEYP-67E6 in linkage group 12, complete sequence Length = 192457 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 523 tattcaacatttttcaagatatcatct 549 ||||||||||||||||| ||||||||| Sbjct: 31725 tattcaacatttttcaaaatatcatct 31751
>gb|AC147907.2| Xenopus tropicalis clone CH216-74C22, complete sequence Length = 184109 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 acaagaaaactggaactcggt 341 ||||||||||||||||||||| Sbjct: 164885 acaagaaaactggaactcggt 164865
>gb|AC147837.2| Xenopus tropicalis clone CH216-28I17, complete sequence Length = 181178 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 acaagaaaactggaactcggt 341 ||||||||||||||||||||| Sbjct: 29788 acaagaaaactggaactcggt 29808
>emb|BX890591.12| Zebrafish DNA sequence from clone DKEY-184J23 in linkage group 19, complete sequence Length = 171079 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 525 ttcaacatttttcaagatatcatct 549 ||||||||||||||| ||||||||| Sbjct: 145245 ttcaacatttttcaaaatatcatct 145221
>gb|AC006354.2| Homo sapiens PAC clone RP5-1091B14 from 7, complete sequence Length = 155742 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cactgcaggcattctctagaa 304 ||||||||||||||||||||| Sbjct: 28734 cactgcaggcattctctagaa 28754
>emb|AL133417.11| Human DNA sequence from clone RP11-436D10 on chromosome 10 Contains part of a novel gene, a novel gene (FLJ14547), the EGR2 gene for early growth response 2 (Krox-20 homolog, Drosophila) and CpG islands, complete sequence Length = 77272 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 645 ctttccccttttctcctaata 665 ||||||||||||||||||||| Sbjct: 2479 ctttccccttttctcctaata 2459
>emb|BX088705.18| Zebrafish DNA sequence from clone DKEY-21G19, complete sequence Length = 204103 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 525 ttcaacatttttcaagatatcatct 549 ||||||||||||||| ||||||||| Sbjct: 46684 ttcaacatttttcaaaatatcatct 46708
>gb|AC099791.2| Homo sapiens chromosome 1 clone RP11-430G17, complete sequence Length = 239704 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 agaaaacaaaaggctgtttcagatt 73 ||||| ||||||||||||||||||| Sbjct: 116217 agaaaccaaaaggctgtttcagatt 116193
>gb|AC022348.2|AC022348 Drosophila melanogaster, chromosome X, region 17E-18A, BAC clone BACR32F24, complete sequence Length = 162307 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 taaagacgatggtgtagagtt 122 ||||||||||||||||||||| Sbjct: 60105 taaagacgatggtgtagagtt 60125
>gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 of 74 of the complete sequence Length = 290619 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 taaagacgatggtgtagagtt 122 ||||||||||||||||||||| Sbjct: 96699 taaagacgatggtgtagagtt 96719
>gb|BC097063.1| Danio rerio Sec23 homolog A (S. cerevisiae), mRNA (cDNA clone MGC:113987 IMAGE:2601268), complete cds Length = 3189 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 ttcaacatttttcaagatatc 545 ||||||||||||||||||||| Sbjct: 3137 ttcaacatttttcaagatatc 3157
>ref|NM_105208.1| Arabidopsis thaliana CYP96A3; heme binding / iron ion binding / monooxygenase/ oxygen binding AT1G65340 (CYP96A3) mRNA, complete cds Length = 1512 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 807 tcatcatccctcaagaggagaggc 830
>gb|AC167185.4| Mus musculus chromosome 3, clone RP23-355G8, complete sequence Length = 213731 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 ttgttaaaaacaactcttat 515 |||||||||||||||||||| Sbjct: 146777 ttgttaaaaacaactcttat 146796
>gb|AC113078.17| Mus musculus chromosome 18, clone RP23-287G21, complete sequence Length = 195627 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcaggatttctgattttgtt 369 |||||||||||||||||||| Sbjct: 140274 gcaggatttctgattttgtt 140293
>gb|AC163620.4| Mus musculus BAC clone RP23-117D22 from chromosome 18, complete sequence Length = 201850 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gcaggatttctgattttgtt 369 |||||||||||||||||||| Sbjct: 13723 gcaggatttctgattttgtt 13742
>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence Length = 180139 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gatccctcacaggagaaaac 55 |||||||||||||||||||| Sbjct: 55345 gatccctcacaggagaaaac 55326
>ref|XM_585301.2| PREDICTED: Bos taurus similar to Ubiquitin-protein ligase E3C (LOC508513), mRNA Length = 4685 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 cattggaacatacaaataaa 105 |||||||||||||||||||| Sbjct: 4643 cattggaacatacaaataaa 4624
>ref|XM_615804.2| PREDICTED: Bos taurus similar to SORCS receptor 1 isoform a (LOC535694), mRNA Length = 1284 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cacaggagaaaacaaaaggc 62 |||||||||||||||||||| Sbjct: 1110 cacaggagaaaacaaaaggc 1129
>ref|XM_748962.1| Aspergillus fumigatus Af293 1,3-beta-glucan biosynthesis protein (Afu5g05770) partial mRNA Length = 1548 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 agatatcatctgcgagcacagcaa 562 |||||||||| ||||||||||||| Sbjct: 961 agatatcatccgcgagcacagcaa 938
>gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosome 6, complete sequence Length = 175917 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 669 catacttgctttctttctct 688 |||||||||||||||||||| Sbjct: 56147 catacttgctttctttctct 56128
>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence Length = 207475 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 catcatccctcaagagcaga 146 |||||||||||||||||||| Sbjct: 71753 catcatccctcaagagcaga 71772
>ref|XM_736259.1| Plasmodium chabaudi chabaudi hypothetical protein (PC001038.02.0) partial mRNA Length = 1398 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 attttgtttcacctccttcaattt 385 ||||| |||||||||||||||||| Sbjct: 402 attttctttcacctccttcaattt 379
>gb|AC102375.8| Mus musculus chromosome 3, clone RP23-281M6, complete sequence Length = 149467 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 ttgttaaaaacaactcttat 515 |||||||||||||||||||| Sbjct: 142026 ttgttaaaaacaactcttat 142007
>emb|AL670405.3| Human DNA sequence from clone RP13-148E24 on chromosome X, complete sequence Length = 144353 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 atattcaacatttttcaaga 541 |||||||||||||||||||| Sbjct: 121528 atattcaacatttttcaaga 121509
>emb|AL359394.9| Human DNA sequence from clone RP11-264M20 on chromosome 13 Contains a novel pseudogene, complete sequence Length = 137246 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tcatattcaacatttttcaa 539 |||||||||||||||||||| Sbjct: 87362 tcatattcaacatttttcaa 87381
>emb|BX547932.17| Zebrafish DNA sequence from clone DKEY-269E10 in linkage group 7, complete sequence Length = 82464 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 caacatttttcaagatatca 546 |||||||||||||||||||| Sbjct: 3914 caacatttttcaagatatca 3895
>emb|AL390157.1|HSM802760 Homo sapiens genomic DNA; cDNA DKFZp434D179 (from clone DKFZp434D179) Length = 3160 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 tcatattcaacatttttcaa 539 |||||||||||||||||||| Sbjct: 2562 tcatattcaacatttttcaa 2581
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ttggaacatacaaataaaga 107 |||||||||||||||||||| Sbjct: 917496 ttggaacatacaaataaaga 917477
>gb|AC093529.2| Homo sapiens chromosome 5 clone RP11-29K14, complete sequence Length = 109306 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 cctcacaggagaaaacaaaa 59 |||||||||||||||||||| Sbjct: 19551 cctcacaggagaaaacaaaa 19532
>gb|AC094109.2| Homo sapiens chromosome 5 clone RP11-62E10, complete sequence Length = 160039 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 cctcacaggagaaaacaaaa 59 |||||||||||||||||||| Sbjct: 114081 cctcacaggagaaaacaaaa 114062
>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163912 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gaaaacaaaaggctgtttca 69 |||||||||||||||||||| Sbjct: 109507 gaaaacaaaaggctgtttca 109488
>gb|AC158637.3| Mus musculus 10 BAC RP24-79K22 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 221409 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 aaacttgttaaaaacaactc 511 |||||||||||||||||||| Sbjct: 109349 aaacttgttaaaaacaactc 109368
>gb|AC010587.6| Homo sapiens chromosome 5 clone CTC-394G3, complete sequence Length = 94536 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 cataacacaagaaaactgga 334 |||||||||||||||||||| Sbjct: 51681 cataacacaagaaaactgga 51662
>gb|AC010372.6| Homo sapiens chromosome 5 clone CTD-2049O16, complete sequence Length = 125174 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cataacacaagaaaactgga 334 |||||||||||||||||||| Sbjct: 115041 cataacacaagaaaactgga 115060
>gb|AF528573.1| Arabidopsis thaliana ecotype Lisse-2 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528572.1| Arabidopsis thaliana ecotype Ita-0 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528571.1| Arabidopsis thaliana ecotype Gr-3 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528570.1| Arabidopsis thaliana ecotype Chi-1 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528569.1| Arabidopsis thaliana ecotype Bs-1 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528568.1| Arabidopsis thaliana ecotype Bla-1 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528567.1| Arabidopsis thaliana ecotype Kas-1 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AF528566.1| Arabidopsis thaliana ecotype Cvi-0 putative cytochrome P450 (At1g65340) gene, partial cds Length = 939 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 589 tcatcatccctcaagaggagaggc 612
>gb|AC093778.3| Homo sapiens BAC clone RP11-167F5 from 4, complete sequence Length = 142526 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 607 atttcaatatgcttcctgga 626 |||||||||||||||||||| Sbjct: 21721 atttcaatatgcttcctgga 21702
>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence Length = 88292 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tcatcatccctcaagagcagaggc 149 ||||||||||||||||| |||||| Sbjct: 34902 tcatcatccctcaagaggagaggc 34879
>gb|AC068323.8|AC068323 Homo sapiens chromosome 5 clone RP11-62E10, complete sequence Length = 160039 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 cctcacaggagaaaacaaaa 59 |||||||||||||||||||| Sbjct: 45959 cctcacaggagaaaacaaaa 45978
>gb|AC153536.3| Mus musculus 10 BAC RP23-402F24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208392 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 492 aaacttgttaaaaacaactc 511 |||||||||||||||||||| Sbjct: 169112 aaacttgttaaaaacaactc 169131
>emb|BX927123.8| Zebrafish DNA sequence from clone CH211-278N15 in linkage group 20, complete sequence Length = 121145 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 526 tcaacatttttcaagatatcatct 549 |||||||||||||| ||||||||| Sbjct: 107120 tcaacatttttcaaaatatcatct 107143
>gb|AC153877.5| Mus musculus 6 BAC RP23-258E21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232977 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 669 catacttgctttctttctct 688 |||||||||||||||||||| Sbjct: 184515 catacttgctttctttctct 184496
>gb|AF087753.1|AF087753 Oryctolagus cuniculus clone Lb 80-H immunoglobulin heavy chain V-D-J region (IgH) gene, partial cds Length = 346 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttcattggaacatacaaata 103 |||||||||||||||||||| Sbjct: 320 ttcattggaacatacaaata 301
>dbj|AP003028.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-446B2, complete sequence Length = 176320 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 atattcaacatttttcaaga 541 |||||||||||||||||||| Sbjct: 41996 atattcaacatttttcaaga 42015
>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence Length = 239743 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 catcatccctcaagagcaga 146 |||||||||||||||||||| Sbjct: 195123 catcatccctcaagagcaga 195142
>emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on chromosome 4, complete sequence Length = 246021 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 ctctggggacagtattgtgg 460 |||||||||||||||||||| Sbjct: 209420 ctctggggacagtattgtgg 209401
>dbj|AP002014.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2262K17, complete sequence Length = 132614 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 607 atttcaatatgcttcctgga 626 |||||||||||||||||||| Sbjct: 74916 atttcaatatgcttcctgga 74935 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,874,397 Number of Sequences: 3902068 Number of extensions: 8874397 Number of successful extensions: 195774 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195475 Number of HSP's gapped (non-prelim): 282 length of query: 726 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 703 effective length of database: 17,143,297,704 effective search space: 12051738285912 effective search space used: 12051738285912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
