ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags21a16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full... 636 e-179
2gb|AY011123.1| Dactylis glomerata mitochondrial processing pepti... 297 2e-77
3dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 4e-54
4dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 4e-54
5ref|NM_189667.1| Oryza sativa (japonica cultivar-group), predic... 200 4e-48
6gb|AY108609.1| Zea mays PCO088346 mRNA sequence 139 1e-29
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
8dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
9gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete seq... 46 0.14
10emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K... 46 0.14
11gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, c... 42 2.1
12gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, c... 42 2.1
13ref|XM_844275.1| PREDICTED: Canis familiaris hypothetical protei... 42 2.1
14ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypo... 42 2.1
15gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complet... 42 2.1
16emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chr... 42 2.1
17emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 o... 42 2.1
18ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, ... 42 2.1
19gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complet... 42 2.1
20emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in... 42 2.1
21emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 42 2.1
22gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 2.1
23gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosom... 40 8.5
24gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromoso... 40 8.5
25gb|AC135188.2| Mus musculus BAC clone RP23-206P4 from chromosome... 40 8.5
26emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, comple... 40 8.5
27gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete seq... 40 8.5
28gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2... 40 8.5
29emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C... 40 8.5
30emb|CR848759.4| Zebrafish DNA sequence from clone CH211-229D2 in... 40 8.5
31emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 i... 40 8.5
32gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-ant... 40 8.5
33gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-ant... 40 8.5
34dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG20111... 40 8.5
35gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete ... 40 8.5
36gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 40 8.5
37emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in... 40 8.5
38gb|AC162927.3| Mus musculus BAC clone RP23-269E12 from chromosom... 40 8.5
39gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 40 8.5
40gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen bio... 40 8.5
41gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Canc... 40 8.5
42gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 40 8.5
43gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, co... 40 8.5
44emb|AL929530.9| Zebrafish DNA sequence from clone CH211-190H2, c... 40 8.5
45gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome... 40 8.5 
>gb|BT009604.1| Triticum aestivum clone wre1n.pk0082.c6:fis, full insert mRNA
            sequence
          Length = 1676

 Score =  636 bits (321), Expect = e-179
 Identities = 398/423 (94%), Gaps = 8/423 (1%)
 Strand = Plus / Minus

                                                                        
Query: 203  taagatcccaaagttgtcccagtgtagaggagttaatgaccaaaattgtatgcatcttat 262
            ||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||||
Sbjct: 1441 taagatcccaaagttatcccacagtagaggagttaataaccaaaattgtatgcatcttat 1382

                                                                        
Query: 263  ttttcttgtgaaaaatgtgaccacagatgatcttgaagaaaaa---atatgaacagttaa 319
            |||||||||||||||||||||||     | ||||| |||||||   ||||||||||||||
Sbjct: 1381 ttttcttgtgaaaaatgtgacca-----ggtcttggagaaaaataaatatgaacagttaa 1327

                                                                        
Query: 320  cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcataggctggt 379
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1326 cttgttcagaagcctcctcatttcgagctgaacttgccacgcactgtctcgtaggctggt 1267

                                                                        
Query: 380  acgctgagaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagca 439
            ||  ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1266 acattgagaacatttccatgagatgccattgtcaatggtgacgagatgatcttctcagca 1207

                                                                        
Query: 440  acagttgatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggt 499
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1206 acagttgatacatctgccagagttatagcatcaacagccttaagaagctgctccacaggt 1147

                                                                        
Query: 500  ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ttcctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgat 1087

                                                                        
Query: 560  tccaggttcctcaagataactgattttgcagatgctttagcacggtccagttgggtttgg 619
            ||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1086 tccaggttcttcaagatagctgattttgcaaatgctttagcacgttccagttgggtttgg 1027

               
Query: 620  tca 622
            |||
Sbjct: 1026 tca 1024



 Score =  220 bits (111), Expect = 4e-54
 Identities = 170/189 (89%), Gaps = 3/189 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tattgaatctttattgatttccttgccccagcactagtttcaacgactttaacctaaaaa 60
            ||||||||||||||| |||||  ||||||  |||| |||||| ||||||||||| |||||
Sbjct: 1648 tattgaatctttattcatttctgtgccccgacactggtttcatcgactttaacccaaaaa 1589

                                                                        
Query: 61   agtggaggaacattttgtacacccttccggactgccaccgaaagagggccacccatgcat 120
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||
Sbjct: 1588 agtggaggaacattttgtacacccttccggactgccactgaaagagggccacccatatat 1529

                                                                        
Query: 121  gatttcactgaatttacagtaacatatctcaagagaacaacatcacaccaccaaactcag 180
            ||||||||||||||||||| ||||||||||  |||   |||||||||||| |||| ||||
Sbjct: 1528 gatttcactgaatttacaggaacatatctcttgag---aacatcacaccaacaaattcag 1472

                     
Query: 181  gtggataca 189
            |||||||||
Sbjct: 1471 gtggataca 1463
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>gb|AY011123.1| Dactylis glomerata mitochondrial processing peptidase alpha-chain
            precursor (DGMPP) mRNA, complete cds
          Length = 1799

 Score =  297 bits (150), Expect = 2e-77
 Identities = 301/350 (86%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                        
Query: 274  aaaatgtgaccacagatgatcttgaa-gaaaaaatatgaacagttaacttgttcagaagc 332
            |||||||||||| | ||||||||| | ||||| |||| |||||||| ||||| |||| ||
Sbjct: 1659 aaaatgtgaccagaaatgatcttggatgaaaatatatcaacagttatcttgtccagacgc 1600

                                                                        
Query: 333  ctcctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgt 392
            || |||||||||||||||||||||| ||||||||||| || ||||||||| |||||||||
Sbjct: 1599 ctactcatttcgagctgaacttgccgcgcactgtctcgtaagctggtacgttgagaacgt 1540

                                                                        
Query: 393  ttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacat 452
             |||||| ||||||||||||||||||||||||||||| ||| |||| | || ||||||||
Sbjct: 1539 ctccatgggatgccattgtcaatggtgatgagatgattttctcagcgagagctgatacat 1480

                                                                        
Query: 453  ctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaa 512
            ||  |||||  | | |||| |||  ||| ||||| ||||| |||||||||||||||||||
Sbjct: 1479 ctttcagagaaacaccatcgacaatcttaagaagttgctcaacaggtttcctttcaccaa 1420

                                                                        
Query: 513  atgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctca 572
            |||||||  ||||||||||||| |||||||||| ||||||||||||||||||| |   ||
Sbjct: 1419 atgccaaaacttggcgccccatatcttcagttgctgatgcctttgattccaggcttgcca 1360

                                                              
Query: 573  agataactgattttgcagatgctttagcacggtccagttgggtttggtca 622
            ||||  ||||||| ||  ||||||||||||| || |||||||| ||||||
Sbjct: 1359 agattgctgatttagctaatgctttagcacgatctagttgggtctggtca 1310
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>dbj|AK101856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O10, full
            insert sequence
          Length = 2012

 Score =  220 bits (111), Expect = 4e-54
 Identities = 243/287 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 395
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1650 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1591

                                                                        
Query: 396  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 455
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1590 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1531

                                                                        
Query: 456  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 515
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1530 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1471

                                                                        
Query: 516  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctcaaga 575
            |||||  ||| || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1470 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttcatcaaga 1411

                                                           
Query: 576  taactgattttgcagatgctttagcacggtccagttgggtttggtca 622
            |  ||||||| || |  |||||||||||||| ||||| |||||||||
Sbjct: 1410 ttgctgatttagctgtcgctttagcacggtcaagttgagtttggtca 1364
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>dbj|AK071930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073N24, full
            insert sequence
          Length = 1991

 Score =  220 bits (111), Expect = 4e-54
 Identities = 243/287 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  ctcatttcgagctgaacttgccacgcactgtctcataggctggtacgctgagaacgtttc 395
            ||||||||||||  ||||||||||  ||||  ||||| | ||| ||| | ||||||||||
Sbjct: 1644 ctcatttcgagcgaaacttgccactgactgaatcataagttggcacgttcagaacgtttc 1585

                                                                        
Query: 396  catgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgatacatctg 455
            |||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |  ||| 
Sbjct: 1584 catgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaatgtctt 1525

                                                                        
Query: 456  ccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcaccaaatg 515
             |||||| | | ||||||||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct: 1524 tcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcaccaaagg 1465

                                                                        
Query: 516  ccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcctcaaga 575
            |||||  ||| || |||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1464 ccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttcatcaaga 1405

                                                           
Query: 576  taactgattttgcagatgctttagcacggtccagttgggtttggtca 622
            |  ||||||| || |  |||||||||||||| ||||| |||||||||
Sbjct: 1404 ttgctgatttagctgtcgctttagcacggtcaagttgagtttggtca 1358
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>ref|NM_189667.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2478

 Score =  200 bits (101), Expect = 4e-48
 Identities = 200/233 (85%)
 Strand = Plus / Minus

                                                                        
Query: 390  cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 449
            |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 2143 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 2084

                                                                        
Query: 450  catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctttcac 509
              |||  |||||| | | ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 2083 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcctttcac 2024

                                                                        
Query: 510  caaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattccaggttcc 569
            |||| ||||||  ||| || |||||||||||||||| |||||||||||||||||||||| 
Sbjct: 2023 caaaggccaatatttgccgtcccatgtcttcagttgctgatgcctttgattccaggttca 1964

                                                                 
Query: 570  tcaagataactgattttgcagatgctttagcacggtccagttgggtttggtca 622
            |||||||  ||||||| || |  |||||||||||||| ||||| |||||||||
Sbjct: 1963 tcaagattgctgatttagctgtcgctttagcacggtcaagttgagtttggtca 1911
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>gb|AY108609.1| Zea mays PCO088346 mRNA sequence
          Length = 2030

 Score =  139 bits (70), Expect = 1e-29
 Identities = 151/178 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  agaacgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagtt 445
            |||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||  
Sbjct: 1616 agaacgtttccatgagatgccattgtcaatggggatgaaatgatcttttcagcaacagac 1557

                                                                        
Query: 446  gatacatctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcctt 505
            | || ||||  || ||| | | |||| |||||||| ||||| |||||  |||||||||||
Sbjct: 1556 gttatatctttcatagtaacaccatctacagccttgagaaggtgctcagcaggtttcctt 1497

                                                                      
Query: 506  tcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcctttgattcca 563
            ||||||||||||||  |||||||||||||||| || |||   ||||||| ||||||||
Sbjct: 1496 tcaccaaatgccaaaacttggcgccccatgtcctctgttagcgatgcctgtgattcca 1439



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 593  gctttagcacggtccagttgggtttggtca 622
            |||||||| |||||||||||| ||||||||
Sbjct: 1409 gctttagcgcggtccagttggctttggtca 1380
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                           
Query: 390     cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 449
               |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 4895375 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 4895316

                                                                      
Query: 450     catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 504
                 |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 4895315 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 4895261



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                           
Query: 552     cctttgattccaggttcctcaagataactgattttgcagatgctttagcacggtccagtt 611
               ||||||||||||||||| |||||||  ||||||| || |  |||||||||||||| ||||
Sbjct: 4894248 cctttgattccaggttcatcaagattgctgatttagctgtcgctttagcacggtcaagtt 4894189

                          
Query: 612     gggtttggtca 622
               | |||||||||
Sbjct: 4894188 gagtttggtca 4894178



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                    
Query: 502     cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 554
               |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 4894375 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 4894323
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                          
Query: 390    cgtttccatgagatgccattgtcaatggtgatgagatgatcttcgcagcaacagttgata 449
              |||||||||||||||||||||||||||||||||| ||||| ||| ||||||  | ||  |
Sbjct: 140024 cgtttccatgagatgccattgtcaatggtgatgatatgattttctcagcaagggctgtaa 139965

                                                                     
Query: 450    catctgccagagttatagcatcaacagcctttagaagctgctccacaggtttcct 504
                |||  |||||| | | ||||||||||||| ||||| ||||| |||||||||||
Sbjct: 139964 tgtctttcagagtaacaccatcaacagccttgagaaggtgctcaacaggtttcct 139910



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                          
Query: 552    cctttgattccaggttcctcaagataactgattttgcagatgctttagcacggtccagtt 611
              ||||||||||||||||| |||||||  ||||||| || |  |||||||||||||| ||||
Sbjct: 138897 cctttgattccaggttcatcaagattgctgatttagctgtcgctttagcacggtcaagtt 138838

                         
Query: 612    gggtttggtca 622
              | |||||||||
Sbjct: 138837 gagtttggtca 138827



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 502    cctttcaccaaatgccaatgcttggcgccccatgtcttcagttgttgatgcct 554
              |||||||||||| ||||||  ||| || |||||||||||||||| ||||||||
Sbjct: 139024 cctttcaccaaaggccaatatttgccgtcccatgtcttcagttgctgatgcct 138972
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>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
          Length = 96063

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 554  tttgattccaggttcctcaagat 576
            |||||||||||||||||||||||
Sbjct: 9711 tttgattccaggttcctcaagat 9689
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>emb|AL049820.23|HSDJ137K2 Human DNA sequence from clone RP1-137K2 on chromosome 6q25.1-25.3
              Contains part of the gene for BRG1-binding protein ELD/OSA1
              (p250R KIAA1235) (FLJ00253 FLJ22292), a novel gene and two
              CpG islands, complete sequence
          Length = 187507

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 117    gcatgatttcactgaatttacag 139
              |||||||||||||||||||||||
Sbjct: 161069 gcatgatttcactgaatttacag 161091
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>gb|AC102910.13| Mus musculus chromosome 15, clone RP24-280E23, complete sequence
          Length = 179719

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   agttaatgaccaaaattgtat 253
             |||||||||||||||||||||
Sbjct: 61917 agttaatgaccaaaattgtat 61937
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>gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, complete sequence
          Length = 177587

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 453   ctgccagagttatagcatcaa 473
             |||||||||||||||||||||
Sbjct: 20594 ctgccagagttatagcatcaa 20614
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>ref|XM_844275.1| PREDICTED: Canis familiaris hypothetical protein LOC607552
           (LOC607552), mRNA
          Length = 879

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 556 tgattccaggttcctcaagat 576
           |||||||||||||||||||||
Sbjct: 243 tgattccaggttcctcaagat 223
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>ref|XM_758790.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
           (TP04_0248) partial mRNA
          Length = 1698

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 156 aacaacatcacaccaccaaactcag 180
           |||||| ||||||||||||||||||
Sbjct: 809 aacaacttcacaccaccaaactcag 785
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>gb|AC080073.6| Homo sapiens BAC clone RP11-321C7 from 7, complete sequence
          Length = 57075

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 416   ggtgatgagatgatcttcgcagcaa 440
             ||||||||||||||||| |||||||
Sbjct: 35226 ggtgatgagatgatctttgcagcaa 35202
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>emb|AL645617.9| Human DNA sequence from clone RP11-796C22 on chromosome 10 Contains
             part of the UPF2 gene for UPF2 regulator of nonsense
             transcripts homolog (yeast) (FLJ38872), complete sequence
          Length = 76287

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 416   ggtgatgagatgatcttcgcagcaa 440
             |||||||||||||||| ||||||||
Sbjct: 58397 ggtgatgagatgatctgcgcagcaa 58421
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>emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 on chromosome 1q23-24, complete
             sequence
          Length = 91017

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 481   tagaagctgctccacaggttt 501
             |||||||||||||||||||||
Sbjct: 64202 tagaagctgctccacaggttt 64182
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>ref|NM_065960.2| Caenorhabditis elegans T12A2.8 (T12A2.8) mRNA, complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 265 ttcttgtgaaaaatgtgacca 285
           |||||||||||||||||||||
Sbjct: 268 ttcttgtgaaaaatgtgacca 248
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>gb|AC114763.6| Homo sapiens BAC clone RP11-369K2 from 2, complete sequence
          Length = 87248

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   tttttcttgtgaaaaatgtga 282
             |||||||||||||||||||||
Sbjct: 40734 tttttcttgtgaaaaatgtga 40714
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>emb|BX469897.6| Zebrafish DNA sequence from clone CH211-39F22 in linkage group 4,
             complete sequence
          Length = 186500

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 505   ttcaccaaatgccaatgcttg 525
             |||||||||||||||||||||
Sbjct: 35705 ttcaccaaatgccaatgcttg 35685
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
            sequence
          Length = 190345

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 453  ctgccagagttatagcatcaa 473
            |||||||||||||||||||||
Sbjct: 2934 ctgccagagttatagcatcaa 2914
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 574     gataactgattttgcagatgcttta 598
               |||||||||||| ||||||||||||
Sbjct: 3318142 gataactgatttcgcagatgcttta 3318118
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>gb|AC131190.3| Mus musculus BAC clone RP24-332E15 from chromosome 5, complete sequence
          Length = 176925

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   tgcatcttatttttcttgtg 272
             ||||||||||||||||||||
Sbjct: 96818 tgcatcttatttttcttgtg 96799
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>gb|AC183773.2| Pan troglodytes BAC clone CH251-2N7 from chromosome 7, complete sequence
          Length = 168126

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 416    ggtgatgagatgatcttcgcagca 439
              ||||||||||||||||| ||||||
Sbjct: 123750 ggtgatgagatgatctttgcagca 123773
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>gb|AC135188.2| Mus musculus BAC clone RP23-206P4 from chromosome 14, complete sequence
          Length = 182464

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      aatctttattgatttccttg 25
              ||||||||||||||||||||
Sbjct: 131769 aatctttattgatttccttg 131788
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>emb|Z81503.1|CEF14F7 Caenorhabditis elegans Cosmid F14F7, complete sequence
          Length = 25468

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 243  caaaattgtatgcatcttat 262
            ||||||||||||||||||||
Sbjct: 8625 caaaattgtatgcatcttat 8606
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>gb|AF101305.2| Caenorhabditis elegans cosmid C04F5, complete sequence
          Length = 40766

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   aatgaccaaaattgtatgca 256
             ||||||||||||||||||||
Sbjct: 32199 aatgaccaaaattgtatgca 32218
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>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    gttaatgaccaaaattgtat 253
              ||||||||||||||||||||
Sbjct: 246428 gttaatgaccaaaattgtat 246409
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>emb|AL121908.16|HSDJ719C8 Human DNA sequence from clone RP4-719C8 on chromosome 20 Contains three
              different 5' ends of the C20orf101 gene and three CpG
              islands, complete sequence
          Length = 150985

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    agatgatcttgaagaaaaaa 306
              ||||||||||||||||||||
Sbjct: 139494 agatgatcttgaagaaaaaa 139475
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>emb|CR848759.4| Zebrafish DNA sequence from clone CH211-229D2 in linkage group 15,
             complete sequence
          Length = 167536

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tttaacctaaaaaagtggag 67
             ||||||||||||||||||||
Sbjct: 66907 tttaacctaaaaaagtggag 66926
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>emb|CR392344.7| Zebrafish DNA sequence from clone CH211-239D11 in linkage group 20
             Contains the 3' end of the gene for a novel protein
             similar to vertebrate X-ray repair complementing defective
             repair in Chinese hamster cells 5 (double-strand-break
             rejoining; Ku autoantigen, 80kDa) (XRCC5), the gene for a
             novel protein similar to vertebrate SWI/SNF related matrix
             associated actin dependent regulator of chromatin
             subfamily a-like 1 (SMARCAL1), two novel genes and three
             CpG islands, complete sequence
          Length = 150882

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   cacaccaccaaactcaggtg 183
             ||||||||||||||||||||
Sbjct: 20138 cacaccaccaaactcaggtg 20157
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>gb|AF498420.1| Pseudomonas aeruginosa serotype 09 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 16349

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gatgccattgtcaatggtga 420
             ||||||||||||||||||||
Sbjct: 13177 gatgccattgtcaatggtga 13196
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>gb|AF498400.1| Pseudomonas aeruginosa serotype 01 putative O-antigen biosynthesis gene
             cluster, partial sequence
          Length = 17453

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gatgccattgtcaatggtga 420
             ||||||||||||||||||||
Sbjct: 14281 gatgccattgtcaatggtga 14300
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>dbj|AK095305.1| Homo sapiens cDNA FLJ37986 fis, clone CTONG2011188, highly similar
           to EPHRIN TYPE-B RECEPTOR 1 PRECURSOR (EC 2.7.1.112)
          Length = 2737

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 aacttgttcagaagcctcct 337
           ||||||||||||||||||||
Sbjct: 187 aacttgttcagaagcctcct 168
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>gb|AC090479.6| Mus Musculus Chromosome 18 RP23-363E23, complete sequence
          Length = 199409

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    atttcactgaatttacagta 141
              ||||||||||||||||||||
Sbjct: 177713 atttcactgaatttacagta 177694
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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gaagaaaaaatatgaacagt 316
             ||||||||||||||||||||
Sbjct: 45416 gaagaaaaaatatgaacagt 45435
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>emb|BX323090.7| Zebrafish DNA sequence from clone CH211-274B7 in linkage group 1,
              complete sequence
          Length = 166353

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 253    tgcatcttatttttcttgtgaaaa 276
              |||||||||||||| |||||||||
Sbjct: 150147 tgcatcttattttttttgtgaaaa 150124
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>gb|AC162927.3| Mus musculus BAC clone RP23-269E12 from chromosome 9, complete sequence
          Length = 213948

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      aatctttattgatttccttg 25
              ||||||||||||||||||||
Sbjct: 115744 aatctttattgatttccttg 115725
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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gaagaaaaaatatgaacagt 316
             ||||||||||||||||||||
Sbjct: 89621 gaagaaaaaatatgaacagt 89640
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>gb|AF540990.1| Pseudomonas aeruginosa isolate 1-60 O-antigen biosynthetic locus,
             partial sequence
          Length = 19104

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   gatgccattgtcaatggtga 420
             ||||||||||||||||||||
Sbjct: 15929 gatgccattgtcaatggtga 15948
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>gb|AC073244.13| Homo sapiens 3 BAC RP11-207J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109999

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   aacttgttcagaagcctcct 337
             ||||||||||||||||||||
Sbjct: 91747 aacttgttcagaagcctcct 91766
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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gaagaaaaaatatgaacagt 316
             ||||||||||||||||||||
Sbjct: 80706 gaagaaaaaatatgaacagt 80725
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>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    atttcactgaatttacagta 141
              ||||||||||||||||||||
Sbjct: 128212 atttcactgaatttacagta 128231
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>emb|AL929530.9| Zebrafish DNA sequence from clone CH211-190H2, complete sequence
          Length = 152963

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tttaacctaaaaaagtggag 67
             ||||||||||||||||||||
Sbjct: 72866 tttaacctaaaaaagtggag 72885
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>gb|AC171197.1| Mus musculus BAC clone RP23-216J7 from chromosome 5, complete
            sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 253  tgcatcttatttttcttgtg 272
            ||||||||||||||||||||
Sbjct: 9841 tgcatcttatttttcttgtg 9822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,461,188
Number of Sequences: 3902068
Number of extensions: 6461188
Number of successful extensions: 134496
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134285
Number of HSP's gapped (non-prelim): 208
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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