ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20l15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ353856.1| Triticum aestivum homeodomain-leucine zipper tran... 351 2e-93
2ref|XM_470308.1| Oryza sativa (japonica cultivar-group), mRNA 129 1e-26
3gb|AY554028.1| Oryza sativa (japonica cultivar-group) clone S141... 129 1e-26
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 129 1e-26
5gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 geno... 129 1e-26
6gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 129 1e-26
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
8dbj|AK108366.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
9gb|AY108143.1| Zea mays PCO082944 mRNA sequence 107 4e-20
10gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete seq... 101 3e-18
11ref|NM_196409.1| Oryza sativa (japonica cultivar-group) putative... 60 9e-06
12gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare str... 60 9e-06
13gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare str... 60 9e-06
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
15gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 9e-06
16gb|AE005031.1| Halobacterium sp. NRC-1 section 62 of 170 of the ... 46 0.14
17emb|BX663609.29| Zebrafish DNA sequence from clone DKEY-182H7 in... 44 0.56
18gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.56
19gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.2
20ref|XM_363288.1| Magnaporthe grisea 70-15 predicted protein (MG0... 42 2.2
21ref|XM_572462.1| Cryptococcus neoformans var. neoformans JEC21 m... 42 2.2
22emb|AL049872.3|CNS0000R Human chromosome 14 DNA sequence BAC R-5... 42 2.2
23emb|AM181532.1| Microbacterium terregens partial recA gene for r... 42 2.2
24emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 42 2.2
25dbj|AB038653.1| Homo sapiens genomic DNA, chromosome 14q32.1, BA... 42 2.2
26gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
27ref|XM_467235.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
28gb|AY023260.1| Oryza sativa microsatellite MRG5585 containing (G... 40 8.7
29gb|AC073221.9| Homo sapiens BAC clone RP11-543D8 from 7, complet... 40 8.7
30gb|AC004848.1| Homo sapiens PAC clone RP4-649P17 from 7, complet... 40 8.7
31emb|BX001001.16| Zebrafish DNA sequence from clone CH211-262P15 ... 40 8.7
32emb|BX682235.2| Human DNA sequence from clone WI2-83379A6 on chr... 40 8.7
33emb|AL590432.9| Human DNA sequence from clone RP11-141A19 on chr... 40 8.7
34gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 8.7
35gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 8.7
36emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 8.7
37gb|DQ372923.1| Bacteriophage mu1/6, complete genome 40 8.7
38emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 8.7
39emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 ... 40 8.7
40emb|BX950191.7| Zebrafish DNA sequence from clone DKEY-88F24 in ... 40 8.7
41gb|AE005983.1| Caulobacter crescentus CB15 section 309 of 359 of... 40 8.7
42gb|AE005835.1| Caulobacter crescentus CB15 section 161 of 359 of... 40 8.7
43gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complet... 40 8.7
44gb|AC092264.2| Homo sapiens chromosome 1 clone RP4-640P3, comple... 40 8.7
45gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 8.7
46gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone mth2-6... 40 8.7
47gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome... 40 8.7
48emb|BX247903.20| Zebrafish DNA sequence from clone CH211-112C12 ... 40 8.7
49dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
50dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
51dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
52dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
53gb|AC027663.14|AC027663 Homo sapiens chromosome 1 clone RP11-285... 40 8.7
54dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
55dbj|AK110831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.7
56gb|AF118046.1|AF118046 Entamoeba dispar cation transporting ATPa... 40 8.7
57emb|AL133467.4|CNS01DV7 Human chromosome 14 DNA sequence BAC R-1... 40 8.7
58gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.7
59gb|AC002390.1|AC002390 Human DNA from overlapping chromosome 19-... 40 8.7
60gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 8.7 
>gb|DQ353856.1| Triticum aestivum homeodomain-leucine zipper transcription factor
            TaHDZipI-2 mRNA, complete cds
          Length = 1126

 Score =  351 bits (177), Expect = 2e-93
 Identities = 264/293 (90%), Gaps = 5/293 (1%)
 Strand = Plus / Minus

                                                                        
Query: 349  gaatccaaacgcatcgaatatttatgcacgctcattgctgatcgtgcgagcaaagcagac 408
            |||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 1123 gaatccaaacgcatcgtatatttatgcacgctcattgctgaccatgcaagcaaagcagac 1064

                                                                        
Query: 409  gtgactgactgcaacaagatatatatcgtcgtg-----ccgatcgaaccatcagttgaat 463
            || | |||||||||||| ||||||||||||  |     |||| ||  | |||||||||| 
Sbjct: 1063 gtcattgactgcaacaaaatatatatcgtcccgatcgaccgaccgggcgatcagttgaac 1004

                                                                        
Query: 464  tgctggtgatccgcccacggccagaagggcggcggctcgtcgacgccgcagagcaggttg 523
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1003 tgctggtgatccgcccacggccagaacggcggcggctcgtcgacgccgcacagcaggttg 944

                                                                        
Query: 524  ccgaagctggccgtgtcaggggcgccgtggtggtgctccatcttggggacggaggcgtgc 583
            |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 943  ccgaagctgggcgtgtcggggccgccgtggtggtgctccatcttggggacggaggcgtgg 884

                                                                 
Query: 584  aggagatggtcgatgtcgacgccggcggggcgcgccacggaggggtagaaggg 636
            |||| ||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 883  aggaaatggtcgatgtcgacacccgcggggcgcgcgacggaggggtagaaggg 831
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>ref|XM_470308.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1571

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                        
Query: 444  gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
            |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 1111 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 1052

                                                 
Query: 504  cgacgccgcagagcaggttgccgaagctggccgtgtc 540
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1051 cgacgccgcagagcaggttgccgaagctggccgtgtc 1015



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 584 aggagatggtcgatgtcgacgccg 607
           ||||| ||||||||||||||||||
Sbjct: 935 aggagctggtcgatgtcgacgccg 912
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>gb|AY554028.1| Oryza sativa (japonica cultivar-group) clone S14171 Hox21 (hox21)
           mRNA, partial cds
          Length = 844

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                       
Query: 444 gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
           |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 443 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 384

                                                
Query: 504 cgacgccgcagagcaggttgccgaagctggccgtgtc 540
           |||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgacgccgcagagcaggttgccgaagctggccgtgtc 347



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 584 aggagatggtcgatgtcgacgccg 607
           ||||| ||||||||||||||||||
Sbjct: 267 aggagctggtcgatgtcgacgccg 244
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Plus

                                                                           
Query: 444     gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
               |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 3766592 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 3766651

                                                    
Query: 504     cgacgccgcagagcaggttgccgaagctggccgtgtc 540
               |||||||||||||||||||||||||||||||||||||
Sbjct: 3766652 cgacgccgcagagcaggttgccgaagctggccgtgtc 3766688



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 584     aggagatggtcgatgtcgacgccg 607
               ||||| ||||||||||||||||||
Sbjct: 3766768 aggagctggtcgatgtcgacgccg 3766791



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                  
Query: 49      aacaccgcctcacaa--ttcacaaatttatgtatg 81
               ||||| |||||||||  ||||||||||||||||||
Sbjct: 3766119 aacactgcctcacaaagttcacaaatttatgtatg 3766153
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>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete
             sequence
          Length = 160738

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                         
Query: 444   gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
             |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 14785 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 14726

                                                  
Query: 504   cgacgccgcagagcaggttgccgaagctggccgtgtc 540
             |||||||||||||||||||||||||||||||||||||
Sbjct: 14725 cgacgccgcagagcaggttgccgaagctggccgtgtc 14689



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Minus

                                                
Query: 49    aacaccgcctcacaa--ttcacaaatttatgtatg 81
             ||||| |||||||||  ||||||||||||||||||
Sbjct: 15258 aacactgcctcacaaagttcacaaatttatgtatg 15224



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 584   aggagatggtcgatgtcgacgccg 607
             ||||| ||||||||||||||||||
Sbjct: 14609 aggagctggtcgatgtcgacgccg 14586
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAa0091P11, complete sequence
          Length = 132151

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Plus

                                                                         
Query: 444   gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
             |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 45216 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 45275

                                                  
Query: 504   cgacgccgcagagcaggttgccgaagctggccgtgtc 540
             |||||||||||||||||||||||||||||||||||||
Sbjct: 45276 cgacgccgcagagcaggttgccgaagctggccgtgtc 45312



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 584   aggagatggtcgatgtcgacgccg 607
             ||||| ||||||||||||||||||
Sbjct: 45392 aggagctggtcgatgtcgacgccg 45415



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                
Query: 49    aacaccgcctcacaa--ttcacaaatttatgtatg 81
             ||||| |||||||||  ||||||||||||||||||
Sbjct: 44743 aacactgcctcacaaagttcacaaatttatgtatg 44777
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Plus

                                                                           
Query: 444     gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
               |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 3766703 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 3766762

                                                    
Query: 504     cgacgccgcagagcaggttgccgaagctggccgtgtc 540
               |||||||||||||||||||||||||||||||||||||
Sbjct: 3766763 cgacgccgcagagcaggttgccgaagctggccgtgtc 3766799



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 584     aggagatggtcgatgtcgacgccg 607
               ||||| ||||||||||||||||||
Sbjct: 3766879 aggagctggtcgatgtcgacgccg 3766902



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Plus

                                                  
Query: 49      aacaccgcctcacaa--ttcacaaatttatgtatg 81
               ||||| |||||||||  ||||||||||||||||||
Sbjct: 3766230 aacactgcctcacaaagttcacaaatttatgtatg 3766264
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>dbj|AK108366.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D03, full
           insert sequence
          Length = 800

 Score =  129 bits (65), Expect = 1e-26
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                       
Query: 444 gatcgaaccatcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgt 503
           |||||| | |||||| ||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct: 225 gatcgatcgatcagtggaagtgctggtgatcgggccatggccagaacggcggcggctcgt 166

                                                
Query: 504 cgacgccgcagagcaggttgccgaagctggccgtgtc 540
           |||||||||||||||||||||||||||||||||||||
Sbjct: 165 cgacgccgcagagcaggttgccgaagctggccgtgtc 129



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Minus

                                              
Query: 49  aacaccgcctcacaa--ttcacaaatttatgtatg 81
           ||||| |||||||||  ||||||||||||||||||
Sbjct: 698 aacactgcctcacaaagttcacaaatttatgtatg 664



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 584 aggagatggtcgatgtcgacgccg 607
           ||||| ||||||||||||||||||
Sbjct: 49  aggagctggtcgatgtcgacgccg 26
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>gb|AY108143.1| Zea mays PCO082944 mRNA sequence
          Length = 517

 Score =  107 bits (54), Expect = 4e-20
 Identities = 75/82 (91%)
 Strand = Plus / Plus

                                                                       
Query: 453 atcagttgaattgctggtgatccgcccacggccagaagggcggcggctcgtcgacgccgc 512
           |||||| ||| |||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct: 337 atcagtggaagtgctggtggtcggcccacggccagaacggcggcggctcgtcgacgccgc 396

                                 
Query: 513 agagcaggttgccgaagctggc 534
           | || |||||||||||||||||
Sbjct: 397 acaggaggttgccgaagctggc 418



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                             
Query: 557 tgctccatcttggggacggaggcgtgcaggagatggtcgatgtcgacgcc 606
           ||||||| ||||||| |||||| ||||||||| ||||||||||| |||||
Sbjct: 462 tgctccagcttgggggcggaggtgtgcaggagctggtcgatgtccacgcc 511
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>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence
          Length = 117931

 Score =  101 bits (51), Expect = 3e-18
 Identities = 66/71 (92%)
 Strand = Plus / Minus

                                                                         
Query: 464   tgctggtgatccgcccacggccagaagggcggcggctcgtcgacgccgcagagcaggttg 523
             |||||||| || |||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct: 21638 tgctggtggtcggcccacggccagaacggcggcggctcgtcgacgccgcacaggaggttg 21579

                        
Query: 524   ccgaagctggc 534
             |||||||||||
Sbjct: 21578 ccgaagctggc 21568



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 57    ctcacaattcacaaatttatgtatg 81
             |||||||||||||||||||| ||||
Sbjct: 22067 ctcacaattcacaaatttatatatg 22043
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>ref|NM_196409.1| Oryza sativa (japonica cultivar-group) putative homeotic protein
            (OSJNBb0044I14.6), mRNA
          Length = 1056

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 53/60 (88%), Gaps = 3/60 (5%)
 Strand = Plus / Minus

                                                                        
Query: 476  gcccacggccagaagggcggcggctcgtcga---cgccgcagagcaggttgccgaagctg 532
            |||||||||||||| |||||| |||||||||   ||||||||||||||  ||||||||||
Sbjct: 1031 gcccacggccagaacggcggctgctcgtcgacggcgccgcagagcaggccgccgaagctg 972
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>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0044A10, from chromosome 10, complete sequence
          Length = 173374

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 53/60 (88%), Gaps = 3/60 (5%)
 Strand = Plus / Minus

                                                                          
Query: 476    gcccacggccagaagggcggcggctcgtcga---cgccgcagagcaggttgccgaagctg 532
              |||||||||||||| |||||| |||||||||   ||||||||||||||  ||||||||||
Sbjct: 137138 gcccacggccagaacggcggctgctcgtcgacggcgccgcagagcaggccgccgaagctg 137079
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>gb|AC090487.3| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0044I14, from Chromosome 10, complete sequence
          Length = 63167

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 53/60 (88%), Gaps = 3/60 (5%)
 Strand = Plus / Plus

                                                                         
Query: 476   gcccacggccagaagggcggcggctcgtcga---cgccgcagagcaggttgccgaagctg 532
             |||||||||||||| |||||| |||||||||   ||||||||||||||  ||||||||||
Sbjct: 39404 gcccacggccagaacggcggctgctcgtcgacggcgccgcagagcaggccgccgaagctg 39463
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 53/60 (88%), Gaps = 3/60 (5%)
 Strand = Plus / Minus

                                                                            
Query: 476      gcccacggccagaagggcggcggctcgtcga---cgccgcagagcaggttgccgaagctg 532
                |||||||||||||| |||||| |||||||||   ||||||||||||||  ||||||||||
Sbjct: 13290889 gcccacggccagaacggcggctgctcgtcgacggcgccgcagagcaggccgccgaagctg 13290830
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 53/60 (88%), Gaps = 3/60 (5%)
 Strand = Plus / Minus

                                                                            
Query: 476      gcccacggccagaagggcggcggctcgtcga---cgccgcagagcaggttgccgaagctg 532
                |||||||||||||| |||||| |||||||||   ||||||||||||||  ||||||||||
Sbjct: 13298229 gcccacggccagaacggcggctgctcgtcgacggcgccgcagagcaggccgccgaagctg 13298170
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>gb|AE005031.1| Halobacterium sp. NRC-1 section 62 of 170 of the complete genome
          Length = 11994

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 583   caggagatggtcgatgtcgacgccggc 609
             |||||||||||||| ||||||||||||
Sbjct: 10069 caggagatggtcgacgtcgacgccggc 10095
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>emb|BX663609.29| Zebrafish DNA sequence from clone DKEY-182H7 in linkage group 7, complete
              sequence
          Length = 248960

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 301    acatgcatgtacaaccgtctcc 322
              ||||||||||||||||||||||
Sbjct: 234825 acatgcatgtacaaccgtctcc 234804
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 490     gggcggcggctcgtcgacgccg 511
               ||||||||||||||||||||||
Sbjct: 2942863 gggcggcggctcgtcgacgccg 2942884
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
              sequence
          Length = 1194300

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 552    ggtggtgctccatcttgggga 572
              |||||||||||||||||||||
Sbjct: 300006 ggtggtgctccatcttgggga 300026
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>ref|XM_363288.1| Magnaporthe grisea 70-15 predicted protein (MG01214.4) partial mRNA
          Length = 801

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 592 gtcgatgtcgacgccggcggg 612
           |||||||||||||||||||||
Sbjct: 228 gtcgatgtcgacgccggcggg 208
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>ref|XM_572462.1| Cryptococcus neoformans var. neoformans JEC21 malate synthase
           (CNH02910) partial mRNA
          Length = 1822

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 552 ggtggtgctccatcttgggga 572
           |||||||||||||||||||||
Sbjct: 789 ggtggtgctccatcttgggga 769
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>emb|AL049872.3|CNS0000R Human chromosome 14 DNA sequence BAC R-529H20 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172674

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    aaaaataataatagcaaagat 135
              |||||||||||||||||||||
Sbjct: 136777 aaaaataataatagcaaagat 136797
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>emb|AM181532.1| Microbacterium terregens partial recA gene for recombinase A, type
           strain DSM 20449
          Length = 596

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 583 caggagatggtcgatgtcgacgccg 607
           |||||| ||||||||||||||||||
Sbjct: 76  caggagctggtcgatgtcgacgccg 52
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 156     tacctacacacgcttcacaca 176
               |||||||||||||||||||||
Sbjct: 3819024 tacctacacacgcttcacaca 3819044
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>dbj|AB038653.1| Homo sapiens genomic DNA, chromosome 14q32.1, BAC clone:B445M7
          Length = 175330

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    aaaaataataatagcaaagat 135
              |||||||||||||||||||||
Sbjct: 174191 aaaaataataatagcaaagat 174171
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>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone
            OSJNBb0052C07, complete sequence
          Length = 154528

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  cgtacgtacgtacgtcctca 344
            ||||||||||||||||||||
Sbjct: 4314 cgtacgtacgtacgtcctca 4295
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>ref|XM_467235.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1490

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 592 gtcgatgtcgacgccggcgg 611
           ||||||||||||||||||||
Sbjct: 767 gtcgatgtcgacgccggcgg 748
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>gb|AY023260.1| Oryza sativa microsatellite MRG5585 containing (GGC)X8, closest to
           marker pTA248, genomic sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 584 aggagatggtcgatgtcgacgccg 607
           ||||| ||||||||||||||||||
Sbjct: 201 aggagctggtcgatgtcgacgccg 178
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>gb|AC073221.9| Homo sapiens BAC clone RP11-543D8 from 7, complete sequence
          Length = 94027

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  aaaaataataatagcaaaga 134
            ||||||||||||||||||||
Sbjct: 6747 aaaaataataatagcaaaga 6766
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>gb|AC004848.1| Homo sapiens PAC clone RP4-649P17 from 7, complete sequence
          Length = 135214

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaaaataataatagcaaaga 134
             ||||||||||||||||||||
Sbjct: 30068 aaaaataataatagcaaaga 30049
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>emb|BX001001.16| Zebrafish DNA sequence from clone CH211-262P15 in linkage group 18,
             complete sequence
          Length = 138944

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 118   aataataatagcaaagatactatt 141
             |||||||||| |||||||||||||
Sbjct: 60431 aataataataacaaagatactatt 60454
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>emb|BX682235.2| Human DNA sequence from clone WI2-83379A6 on chromosome X, complete
             sequence
          Length = 40361

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gacaagaaaaataataatag 128
             ||||||||||||||||||||
Sbjct: 19930 gacaagaaaaataataatag 19949
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>emb|AL590432.9| Human DNA sequence from clone RP11-141A19 on chromosome 1 Contains
            the 3' end of a novel gene and a novel gene, complete
            sequence
          Length = 95760

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 112  aagaaaaataataatagcaa 131
            ||||||||||||||||||||
Sbjct: 5683 aagaaaaataataatagcaa 5702
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 577   ggcgtgcaggagatggtcga 596
             ||||||||||||||||||||
Sbjct: 81403 ggcgtgcaggagatggtcga 81384
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 491     ggcggcggctcgtcgacgccgcag 514
               |||| |||||||||||||||||||
Sbjct: 1464700 ggcgccggctcgtcgacgccgcag 1464677
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 586     gagatggtcgatgtcgacgc 605
               ||||||||||||||||||||
Sbjct: 1322537 gagatggtcgatgtcgacgc 1322556
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>gb|DQ372923.1| Bacteriophage mu1/6, complete genome
          Length = 38194

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 591   ggtcgatgtcgacgccggcggggc 614
             ||||||||||||||||||| ||||
Sbjct: 29371 ggtcgatgtcgacgccggccgggc 29394
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 594    cgatgtcgacgccggcgggg 613
              ||||||||||||||||||||
Sbjct: 139602 cgatgtcgacgccggcgggg 139583
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>emb|CR361560.10| Zebrafish DNA sequence from clone CH211-122G18 in linkage group 24,
              complete sequence
          Length = 184660

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 113    agaaaaataataatagcaaa 132
              ||||||||||||||||||||
Sbjct: 104467 agaaaaataataatagcaaa 104448
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>emb|BX950191.7| Zebrafish DNA sequence from clone DKEY-88F24 in linkage group 18,
             complete sequence
          Length = 141551

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 118   aataataatagcaaagatactatt 141
             |||||||||| |||||||||||||
Sbjct: 78524 aataataataacaaagatactatt 78501
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>gb|AE005983.1| Caulobacter crescentus CB15 section 309 of 359 of the complete genome
          Length = 13041

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 481  cggccagaagggcggcggct 500
            ||||||||||||||||||||
Sbjct: 8609 cggccagaagggcggcggct 8628
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>gb|AE005835.1| Caulobacter crescentus CB15 section 161 of 359 of the complete genome
          Length = 10301

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 592  gtcgatgtcgacgccggcgg 611
            ||||||||||||||||||||
Sbjct: 8113 gtcgatgtcgacgccggcgg 8132
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>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence
          Length = 132337

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aaaaataataatagcaaaga 134
             ||||||||||||||||||||
Sbjct: 43505 aaaaataataatagcaaaga 43524
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>gb|AC092264.2| Homo sapiens chromosome 1 clone RP4-640P3, complete sequence
          Length = 113330

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    aagaaaaataataatagcaa 131
              ||||||||||||||||||||
Sbjct: 108098 aagaaaaataataatagcaa 108117
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 504     cgacgccgcagagcaggttgccga 527
               |||||||||| |||||||||||||
Sbjct: 2830367 cgacgccgcaaagcaggttgccga 2830390
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>gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone mth2-62p11, complete
             sequence
          Length = 95165

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 110   acaagaaaaataataatagcaaag 133
             |||||||||||||||||| |||||
Sbjct: 61420 acaagaaaaataataatatcaaag 61397
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>gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome 7, complete sequence
          Length = 256298

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   tcaaactccaaaatctacct 160
             ||||||||||||||||||||
Sbjct: 97541 tcaaactccaaaatctacct 97522
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>emb|BX247903.20| Zebrafish DNA sequence from clone CH211-112C12 in linkage group 18,
              complete sequence
          Length = 188859

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 118    aataataatagcaaagatactatt 141
              |||||||||| |||||||||||||
Sbjct: 145388 aataataataacaaagatactatt 145411
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 592      gtcgatgtcgacgccggcgg 611
                ||||||||||||||||||||
Sbjct: 28371311 gtcgatgtcgacgccggcgg 28371292
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 486      agaagggcggcggctcgtcg 505
                ||||||||||||||||||||
Sbjct: 29311015 agaagggcggcggctcgtcg 29311034
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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   agaagggcggcggctcgtcg 505
             ||||||||||||||||||||
Sbjct: 89878 agaagggcggcggctcgtcg 89897
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>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0510F09
          Length = 138277

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 486  agaagggcggcggctcgtcg 505
            ||||||||||||||||||||
Sbjct: 6077 agaagggcggcggctcgtcg 6096
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>gb|AC027663.14|AC027663 Homo sapiens chromosome 1 clone RP11-285I23, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    aagaaaaataataatagcaa 131
              ||||||||||||||||||||
Sbjct: 104246 aagaaaaataataatagcaa 104265
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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1743_B12
          Length = 175645

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    gtcgatgtcgacgccggcgg 611
              ||||||||||||||||||||
Sbjct: 163068 gtcgatgtcgacgccggcgg 163049
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>dbj|AK110831.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A04, full
           insert sequence
          Length = 1489

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 592 gtcgatgtcgacgccggcgg 611
           ||||||||||||||||||||
Sbjct: 767 gtcgatgtcgacgccggcgg 748
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>gb|AF118046.1|AF118046 Entamoeba dispar cation transporting ATPase (atpase) gene, partial
            cds
          Length = 4854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  agaaaaataataatagcaaa 132
            ||||||||||||||||||||
Sbjct: 2618 agaaaaataataatagcaaa 2637
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>emb|AL133467.4|CNS01DV7 Human chromosome 14 DNA sequence BAC R-1070N10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210791

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    acacacgcttcacacacacc 180
              ||||||||||||||||||||
Sbjct: 147406 acacacgcttcacacacacc 147387
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 592     gtcgatgtcgacgccggcgg 611
               ||||||||||||||||||||
Sbjct: 3641826 gtcgatgtcgacgccggcgg 3641845
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>gb|AC002390.1|AC002390 Human DNA from overlapping chromosome 19-specific cosmids R30072 and
             R28588, genomic sequence, complete sequence
          Length = 70311

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   agaaaaataataatagcaaa 132
             ||||||||||||||||||||
Sbjct: 60685 agaaaaataataatagcaaa 60666
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 472     atccgcccacggccagaagggcgg 495
               |||||||||||||||| |||||||
Sbjct: 3016010 atccgcccacggccagcagggcgg 3015987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,476,375
Number of Sequences: 3902068
Number of extensions: 5476375
Number of successful extensions: 166943
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166003
Number of HSP's gapped (non-prelim): 935
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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