ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 46 0.081
2emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on ch... 42 1.3
3gb|AC110206.21| Mus musculus chromosome 19, clone RP23-155H17, c... 40 5.0
4gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome... 40 5.0

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 206     accacgcatgaaacggtggatcaacag 232
               |||||||||||| ||||||||||||||
Sbjct: 1897694 accacgcatgaagcggtggatcaacag 1897720



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>emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on chromosome 1 Contains the
             3' end of the CIAS1 gene for cold autoinflammatory
             syndrome 1, the gene for a novel 7 transmembrane receptor
             (rhodopsin family) protein, a 7 transmembrane receptor
             (rhodopsin family) pseudogene, two novel genes (LOC148823,
             LOC148824), the OR2C3 gene for olfactory receptor family 2
             subfamily C member 3, the 3' end of a novel gene, the
             OR2G2 for olfactory receptor family 2 subfamily G member
             2, the OR2G3 for olfactory receptor family 2 subfamily G
             member 3, the gene for a novel protein similar to
             Olfactory receptor 5AV1 (LOC127617) and three CpG islands,
             complete sequence
          Length = 185467

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 166   acctcctgctccaaaactact 186
             |||||||||||||||||||||
Sbjct: 64702 acctcctgctccaaaactact 64682



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>gb|AC110206.21| Mus musculus chromosome 19, clone RP23-155H17, complete sequence
          Length = 199583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ctctctctccattctggaga 137
              ||||||||||||||||||||
Sbjct: 122518 ctctctctccattctggaga 122499



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>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence
          Length = 221010

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cactcacctcctgctccaaa 180
              ||||||||||||||||||||
Sbjct: 132979 cactcacctcctgctccaaa 132998


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,260,261
Number of Sequences: 3902068
Number of extensions: 2260261
Number of successful extensions: 40003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39985
Number of HSP's gapped (non-prelim): 18
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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