| Clone Name | rbags20l14 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome | 46 | 0.081 | 2 | emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on ch... | 42 | 1.3 | 3 | gb|AC110206.21| Mus musculus chromosome 19, clone RP23-155H17, c... | 40 | 5.0 | 4 | gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome... | 40 | 5.0 |
|---|
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 46.1 bits (23), Expect = 0.081 Identities = 26/27 (96%) Strand = Plus / Plus Query: 206 accacgcatgaaacggtggatcaacag 232 |||||||||||| |||||||||||||| Sbjct: 1897694 accacgcatgaagcggtggatcaacag 1897720
>emb|AL606804.11| Human DNA sequence from clone RP11-978I15 on chromosome 1 Contains the 3' end of the CIAS1 gene for cold autoinflammatory syndrome 1, the gene for a novel 7 transmembrane receptor (rhodopsin family) protein, a 7 transmembrane receptor (rhodopsin family) pseudogene, two novel genes (LOC148823, LOC148824), the OR2C3 gene for olfactory receptor family 2 subfamily C member 3, the 3' end of a novel gene, the OR2G2 for olfactory receptor family 2 subfamily G member 2, the OR2G3 for olfactory receptor family 2 subfamily G member 3, the gene for a novel protein similar to Olfactory receptor 5AV1 (LOC127617) and three CpG islands, complete sequence Length = 185467 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 166 acctcctgctccaaaactact 186 ||||||||||||||||||||| Sbjct: 64702 acctcctgctccaaaactact 64682
>gb|AC110206.21| Mus musculus chromosome 19, clone RP23-155H17, complete sequence Length = 199583 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ctctctctccattctggaga 137 |||||||||||||||||||| Sbjct: 122518 ctctctctccattctggaga 122499
>gb|AC171210.1| Mus musculus BAC clone RP23-36D15 from chromosome 7, complete sequence Length = 221010 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cactcacctcctgctccaaa 180 |||||||||||||||||||| Sbjct: 132979 cactcacctcctgctccaaa 132998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,260,261 Number of Sequences: 3902068 Number of extensions: 2260261 Number of successful extensions: 40003 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39985 Number of HSP's gapped (non-prelim): 18 length of query: 375 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 353 effective length of database: 17,147,199,772 effective search space: 6052961519516 effective search space used: 6052961519516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)