No.
Definition
Score (bits)
E Value
1 dbj|AK101789.1| Oryza sativa (japonica cultivar-group) cDNA clon...
434
e-118
2 dbj|AK060466.1| Oryza sativa (japonica cultivar-group) cDNA clon...
434
e-118
3 gb|AY107163.1| Zea mays PCO109318 mRNA sequence
418
e-114
4 gb|BT017023.1| Zea mays clone EK07D2312C08.c mRNA sequence
236
7e-59
5 gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 1...
119
1e-23
6 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
119
1e-23
7 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
119
1e-23
8 gb|AC092634.3| Homo sapiens BAC clone RP11-340I6 from 7, complet...
42
2.3
9 gb|AC079790.6| Homo sapiens BAC clone RP11-484E6 from 2, complet...
42
2.3
10 gb|AF111167.2|DJ293M10 Homo sapiens jun dimerization protein gen...
40
8.9
11 gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genom...
40
8.9
12 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
8.9
13 gb|AF398650.1| Lachnophorus elegantulus 28S large subunit riboso...
40
8.9
14 emb|AL450107.11| Human DNA sequence from clone RP11-495K23 on ch...
40
8.9
15 gb|AC130276.2| Homo sapiens chromosome 3 clone RP11-1076P5, comp...
40
8.9
16 ref|NM_164677.1| Drosophila melanogaster slowmo CG9131-RA, trans...
40
8.9
17 gb|AC022029.7| Homo sapiens chromosome 10 clone RP11-93L14, comp...
40
8.9
18 ref|NM_079966.2| Drosophila melanogaster slowmo CG9131-RB, trans...
40
8.9
19 gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, comp...
40
8.9
20 gb|AY051484.1| Drosophila melanogaster GH14384 full length cDNA
40
8.9
21 gb|AC092216.1|AC092216 Drosophila melanogaster, chromosome 2L, r...
40
8.9
22 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.9
23 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.9
24 dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.9
25 gb|AE003612.2| Drosophila melanogaster chromosome 2L, section 21...
40
8.9
26 gb|U37214.1|SIU37214 Simian immunodeficiency virus isolate G023 ...
40
8.9
27 emb|BX323833.4| Pig DNA sequence from clone XX-554F3, complete s...
40
8.9
28 gb|AC004758.1|AC004758 Drosophila melanogaster DNA sequence (P1s...
40
8.9
>gb|AC123517.2 | Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09,
complete sequence
Length = 135363
Score = 119 bits (60), Expect = 1e-23
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 426 cctgcgttgtgccataagaacgccactttgatggatcagagccctcgcgtgggaacacaa 485
|||| |||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 42887 cctgagttgtgccgtaagaacgccactttgttggatcagagccctcacgtgggaagacaa 42828
Query: 486 ctgctaaaactggcattggtggcctgtatttagcaactaacctg 529
| || || ||||||||||||||| |||| || ||||||||||||
Sbjct: 42827 cggccaacactggcattggtggcttgtacttggcaactaacctg 42784
Score = 111 bits (56), Expect = 3e-21
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 224 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 283
||||||||||||||||||||||| ||||| |||||||| | ||||| |||| ||||||
Sbjct: 43407 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 43348
Query: 284 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 343
|| ||||||| || || || || || |||||||| ||||||||||||||||||| ||
Sbjct: 43347 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 43288
Query: 344 tctttggtgagcccaccggtttcagcct 371
|| ||||||||||||| ||||||||||
Sbjct: 43287 tccctggtgagcccaccagtttcagcct 43260
Score = 85.7 bits (43), Expect = 2e-13
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 525 acctggcagctctccctgagaaggtgaacacaacaatcgcagcagcttttactttcattg 584
||||||||||||| |||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct: 42713 acctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttaccttcattg 42654
Query: 585 cag 587
|||
Sbjct: 42653 cag 42651
Score = 83.8 bits (42), Expect = 7e-13
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 593 accgctgatgatgccacagattcttcatgggccattggttcacctacatgcctcacta 650
|||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 42564 accgctgaagatgccacagattcttcatggggcattggatcacctacatgcttcacta 42507
Score = 65.9 bits (33), Expect = 2e-07
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 369 cctcgtcagtactccccatcaaagggtacacacctctcacagaaaaacattgcctcgcct 428
|||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| ||||
Sbjct: 43050 cctcctcagtactcgccatcaaagggtagacacctcttgcagcaaaacattgccttgcct 42991
Query: 429 g 429
|
Sbjct: 42990 g 42990
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 119 bits (60), Expect = 1e-23
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 426 cctgcgttgtgccataagaacgccactttgatggatcagagccctcgcgtgggaacacaa 485
|||| |||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 5986804 cctgagttgtgccgtaagaacgccactttgttggatcagagccctcacgtgggaagacaa 5986745
Query: 486 ctgctaaaactggcattggtggcctgtatttagcaactaacctg 529
| || || ||||||||||||||| |||| || ||||||||||||
Sbjct: 5986744 cggccaacactggcattggtggcttgtacttggcaactaacctg 5986701
Score = 111 bits (56), Expect = 3e-21
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 224 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 283
||||||||||||||||||||||| ||||| |||||||| | ||||| |||| ||||||
Sbjct: 5987324 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 5987265
Query: 284 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 343
|| ||||||| || || || || || |||||||| ||||||||||||||||||| ||
Sbjct: 5987264 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 5987205
Query: 344 tctttggtgagcccaccggtttcagcct 371
|| ||||||||||||| ||||||||||
Sbjct: 5987204 tccctggtgagcccaccagtttcagcct 5987177
Score = 85.7 bits (43), Expect = 2e-13
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 525 acctggcagctctccctgagaaggtgaacacaacaatcgcagcagcttttactttcattg 584
||||||||||||| |||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct: 5986630 acctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttaccttcattg 5986571
Query: 585 cag 587
|||
Sbjct: 5986570 cag 5986568
Score = 83.8 bits (42), Expect = 7e-13
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 593 accgctgatgatgccacagattcttcatgggccattggttcacctacatgcctcacta 650
|||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 5986481 accgctgaagatgccacagattcttcatggggcattggatcacctacatgcttcacta 5986424
Score = 65.9 bits (33), Expect = 2e-07
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 369 cctcgtcagtactccccatcaaagggtacacacctctcacagaaaaacattgcctcgcct 428
|||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| ||||
Sbjct: 5986967 cctcctcagtactcgccatcaaagggtagacacctcttgcagcaaaacattgccttgcct 5986908
Query: 429 g 429
|
Sbjct: 5986907 g 5986907
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 119 bits (60), Expect = 1e-23
Identities = 93/104 (89%)
Strand = Plus / Minus
Query: 426 cctgcgttgtgccataagaacgccactttgatggatcagagccctcgcgtgggaacacaa 485
|||| |||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 6053281 cctgagttgtgccgtaagaacgccactttgttggatcagagccctcacgtgggaagacaa 6053222
Query: 486 ctgctaaaactggcattggtggcctgtatttagcaactaacctg 529
| || || ||||||||||||||| |||| || ||||||||||||
Sbjct: 6053221 cggccaacactggcattggtggcttgtacttggcaactaacctg 6053178
Score = 111 bits (56), Expect = 3e-21
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 224 cactcgatgatcttgacaacagaagaatcaccgatcttttcaaaaataatcaccctgtcg 283
||||||||||||||||||||||| ||||| |||||||| | ||||| |||| ||||||
Sbjct: 6053801 cactcgatgatcttgacaacagatgaatcgccgatcttctggaaaatgatcaacctgtca 6053742
Query: 284 tatggctttattatgccgactgaccggccatagtttagtgcaagttttatcccgtatgct 343
|| ||||||| || || || || || |||||||| ||||||||||||||||||| ||
Sbjct: 6053741 tagggctttagcataccaaccgagcgaccatagttctgtgcaagttttatcccgtactct 6053682
Query: 344 tctttggtgagcccaccggtttcagcct 371
|| ||||||||||||| ||||||||||
Sbjct: 6053681 tccctggtgagcccaccagtttcagcct 6053654
Score = 85.7 bits (43), Expect = 2e-13
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 525 acctggcagctctccctgagaaggtgaacacaacaatcgcagcagcttttactttcattg 584
||||||||||||| |||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct: 6053107 acctggcagctcttcctgagaaagtgaacacaacgattgcagcagcttttaccttcattg 6053048
Query: 585 cag 587
|||
Sbjct: 6053047 cag 6053045
Score = 83.8 bits (42), Expect = 7e-13
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 593 accgctgatgatgccacagattcttcatgggccattggttcacctacatgcctcacta 650
|||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||||
Sbjct: 6052958 accgctgaagatgccacagattcttcatggggcattggatcacctacatgcttcacta 6052901
Score = 65.9 bits (33), Expect = 2e-07
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 369 cctcgtcagtactccccatcaaagggtacacacctctcacagaaaaacattgcctcgcct 428
|||| ||||||||| ||||||||||||| |||||||| ||| |||||||||||| ||||
Sbjct: 6053444 cctcctcagtactcgccatcaaagggtagacacctcttgcagcaaaacattgccttgcct 6053385
Query: 429 g 429
|
Sbjct: 6053384 g 6053384
>gb|AC004758.1 |AC004758 Drosophila melanogaster DNA sequence (P1s DS06106 (D123), DS05973
(D122), and DS08584 (D118)), complete sequence
Length = 174311
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 tatatatataaacctaaagt 75
||||||||||||||||||||
Sbjct: 43377 tatatatataaacctaaagt 43396
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,550,173
Number of Sequences: 3902068
Number of extensions: 6550173
Number of successful extensions: 127284
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126966
Number of HSP's gapped (non-prelim): 318
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)