Clone Information

BLAST Search Result

Clone Name	rbags20l07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_470217.1\| Oryza sativa (japonica cultivar-group), predic...	323	5e-85
2	gb\|BT018727.1\| Zea mays clone EL01N0518G02.d mRNA sequence	254	3e-64
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	139	1e-29
4	gb\|AC090485.3\|AC090485 Genomic Sequence for Oryza sativa, Nippon...	139	1e-29
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
6	dbj\|AK062333.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	84	7e-13
7	gb\|AY104595.1\| Zea mays PCO064868 mRNA sequence	62	3e-06
8	ref\|XM_447948.1\| Candida glabrata CBS138, CAGL0J05588g partial mRNA	44	0.62
9	emb\|CR380956.1\| Candida glabrata strain CBS138 chromosome J comp...	44	0.62
10	ref\|NM_129236.1\| Arabidopsis thaliana unknown protein AT2G36810 ...	42	2.5
11	emb\|AL390119.25\| Human DNA sequence from clone RP11-403P14 on ch...	42	2.5
12	gb\|BT008796.1\| Arabidopsis thaliana At2g36810 gene, complete cds	42	2.5
13	gb\|BT002534.1\| Arabidopsis thaliana Unknown protein mRNA, comple...	42	2.5
14	ref\|XM_521107.1\| PREDICTED: Pan troglodytes similar to KIF4A pro...	40	9.7
15	gb\|AC104516.2\| Drosophila melanogaster clone BACR20O17, complete...	40	9.7
16	ref\|XM_590708.2\| PREDICTED: Bos taurus similar to Golgi coiled-c...	40	9.7
17	gb\|AC008194.9\| Drosophila melanogaster clone BACR49A05, complete...	40	9.7
18	ref\|XM_549061.2\| PREDICTED: Canis familiaris similar to Chromoso...	40	9.7
19	ref\|XM_976043.1\| PREDICTED: Mus musculus RIKEN cDNA 4930463M05 g...	40	9.7
20	ref\|XM_981487.1\| PREDICTED: Mus musculus RIKEN cDNA 4930463M05 g...	40	9.7
21	ref\|XM_909198.2\| PREDICTED: Mus musculus RIKEN cDNA 4930463M05 g...	40	9.7
22	emb\|CR753817.13\| Zebrafish DNA sequence from clone DKEY-195M11 i...	40	9.7
23	gb\|AC132142.3\| Mus musculus BAC clone RP23-75I5 from chromosome ...	40	9.7
24	gb\|BC050548.1\| Homo sapiens kinesin family member 4A, mRNA (cDNA...	40	9.7
25	emb\|AL670729.19\| Human DNA sequence from clone RP11-245P10 on ch...	40	9.7
26	emb\|AL139398.20\| Human DNA sequence from clone RP11-528B10 on ch...	40	9.7
27	emb\|AL031178.1\|HS341E18 Human DNA sequence from clone RP3-341E18...	40	9.7
28	emb\|AL023655.1\|HS242N11 Human DNA sequence from clone RP1-242N11...	40	9.7
29	emb\|BX950851.1\| Erwinia carotovora subsp. atroseptica SCRI1043, ...	40	9.7
30	emb\|AJ271784.1\|HSA271784 Homo sapiens mRNA for Chromokinesin (KI...	40	9.7
31	emb\|BX470134.5\| Zebrafish DNA sequence from clone CH211-144C15 i...	40	9.7
32	emb\|BX324135.14\| Zebrafish DNA sequence from clone DKEY-16J16, c...	40	9.7
33	ref\|NM_012310.2\| Homo sapiens kinesin family member 4A (KIF4A), ...	40	9.7
34	dbj\|AK024266.1\| Homo sapiens cDNA FLJ14204 fis, clone NT2RP30031...	40	9.7
35	dbj\|AK022717.1\| Homo sapiens cDNA FLJ12655 fis, clone NT2RM40021...	40	9.7
36	gb\|AC006234.4\| Arabidopsis thaliana chromosome 2 clone F5H14 map...	40	9.7
37	gb\|AC023823.7\| Homo sapiens chromosome 16 clone RP11-163K4, comp...	40	9.7
38	gb\|AF071592.2\|AF071592 Homo sapiens kinesin superfamily motor KI...	40	9.7
39	ref\|XM_234487.2\| PREDICTED: Rattus norvegicus similar to kinesin...	40	9.7
40	gb\|AF277375.1\|AF277375 Homo sapiens chromokinesin mRNA, partial cds	40	9.7
41	emb\|BX005175.8\| Zebrafish DNA sequence from clone DKEY-14H17 in ...	40	9.7
42	gb\|AC007489.3\|AC007489 Homo sapiens chromosome 16 clone RP11-122...	40	9.7
43	dbj\|AB025608.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	9.7
44	dbj\|AK000638.1\| Homo sapiens cDNA FLJ20631 fis, clone KAT03761, ...	40	9.7
45	gb\|AF179308.1\|AF179308 Homo sapiens KIF4 (KIF4) mRNA, complete cds	40	9.7
46	gb\|AE003511.4\| Drosophila melanogaster chromosome X, section 63 ...	40	9.7
47	gb\|AF047975.1\|AF047975 Arabidopsis thaliana putative ethylene re...	40	9.7
48	emb\|BX572639.11\| Zebrafish DNA sequence from clone CH211-209J5 i...	40	9.7
49	gb\|AC122507.5\| Mus musculus BAC clone RP24-426K19 from 12, compl...	40	9.7
50	gb\|DQ120633.1\| Hylobates lar KIF4B gene, partial cds	40	9.7
51	gb\|DQ120631.1\| Gorilla gorilla KIF4B gene, partial cds	40	9.7
52	gb\|DQ120630.1\| Pan troglodytes KIF4B gene, partial cds	40	9.7
53	dbj\|AB208797.1\| Homo sapiens mRNA for Chromosome-associated kine...	40	9.7

>ref|XM_470217.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4650

 Score =  323 bits (163), Expect = 5e-85
 Identities = 236/259 (91%), Gaps = 1/259 (0%)
 Strand = Plus / Minus

                                                                        
Query: 451  gttagacctctttatcaggaggcccaatgcagaagatgctgctgctcgaacaacggcctc 510
            |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||
Sbjct: 4509 gttagacctctttatcagaaggcccagtgcagaagatgatgctgctcgaacaactgcatc 4450

                                                                        
Query: 511  tggtgattggctcattctaccaaccaacatagcgaaaacctgggagaagtaaggagcaag 570
            |||||||||||||| |||||| ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 4449 tggtgattggctcagtctaccgaccaaaatagcaaacacctgggagaagtaaggagcgag 4390

                                                                        
Query: 571  ggaagcgttgatcatccaaaaaggatagcatgcaactaaccaagcaaactgcatttgctt 630
            | || ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 4389 g-aaccgttgatcatctaaaaaggatagcatgcagctcaccaagcaaactgcatttgctt 4331

                                                                        
Query: 631  gaatgaccggccaaggtgcatcaaatgcctggatagcagattctaggtagctgtcaactc 690
              ||||| ||||||||||||||||| ||||||||||||||||| | ||||||||| ||||
Sbjct: 4330 tgatgactggccaaggtgcatcaaacgcctggatagcagattcaaagtagctgtcgactc 4271

                               
Query: 691  tggcaggagatagtcgaca 709
            |||||||||||||||||||
Sbjct: 4270 tggcaggagatagtcgaca 4252

to top

>gb|BT018727.1| Zea mays clone EL01N0518G02.d mRNA sequence
          Length = 1510

 Score =  254 bits (128), Expect = 3e-64
 Identities = 249/288 (86%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                        
Query: 413  tctgttcgatcaaaccgtgaactcaatgacttgagcatgttagacctctttatcaggagg 472
            |||| ||||||| | ||||||  || |||| | ||||||||||| ||||| ||||| | |
Sbjct: 1161 tctgctcgatcatatcgtgaaaccagtgacctcagcatgttagatctcttgatcagaatg 1102

                                                                        
Query: 473  cccaatgcagaagatgctgctgctcgaacaacggcctctggtgattggctcattctacca 532
            ||||  ||||| ||||||| |||||||||||  || ||||| ||||||||||||||||||
Sbjct: 1101 cccagcgcagacgatgctgatgctcgaacaattgcgtctggcgattggctcattctacca 1042

                                                                        
Query: 533  accaacatagcgaaaacctgggagaagtaaggagcaagggaagcgttgatcatccaaaaa 592
            |||||| |||| || ||||||||||| |||||||||| | || || ||||||||||||||
Sbjct: 1041 accaacgtagcaaatacctgggagaaataaggagcaatg-aatcgctgatcatccaaaaa 983

                                                                        
Query: 593  ggatagcatgcaactaaccaagcaaactgcatttgcttgaatgaccggccaaggtgcatc 652
            ||||||||||||||| ||||| |||||||| ||||||   ||||| ||||||||||||||
Sbjct: 982  ggatagcatgcaactcaccaaacaaactgcgtttgctcttatgactggccaaggtgcatc 923

                                                            
Query: 653  aaatgcctggatagcagattctaggtagctgtcaactctggcaggaga 700
             |||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct: 922  gaatgcctggatagccgattctaggtagctgtcgactctggcgggaga 875

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  139 bits (70), Expect = 1e-29
 Identities = 104/114 (91%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                           
Query: 548     acctgggagaagtaaggagcaagggaagcgttgatcatccaaaaaggatagcatgcaact 607
               |||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 2586595 acctgggagaagtaaggagcgagg-aaccgttgatcatctaaaaaggatagcatgcagct 2586537

                                                                     
Query: 608     aaccaagcaaactgcatttgcttgaatgaccggccaaggtgcatcaaatgcctg 661
                ||||||||||||||||||||||  ||||| ||||||||||||||||| |||||
Sbjct: 2586536 caccaagcaaactgcatttgctttgatgactggccaaggtgcatcaaacgcctg 2586483



 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                           
Query: 451     gttagacctctttatcaggaggcccaatgcagaagatgctgctgctcgaacaacggcctc 510
               |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||
Sbjct: 2586770 gttagacctctttatcagaaggcccagtgcagaagatgatgctgctcgaacaactgcatc 2586711

                                                
Query: 511     tggtgattggctcattctaccaaccaacatagc 543
               |||||||||||||| |||||| ||||| |||||
Sbjct: 2586710 tggtgattggctcagtctaccgaccaaaatagc 2586678



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                   
Query: 658     cctggatagcagattctaggtagctgtcaactctggcaggagatagtcgaca 709
               |||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct: 2586418 cctggatagcagattcaaagtagctgtcgactctggcaggagatagtcgaca 2586367

to top

>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score =  139 bits (70), Expect = 1e-29
 Identities = 104/114 (91%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                         
Query: 548   acctgggagaagtaaggagcaagggaagcgttgatcatccaaaaaggatagcatgcaact 607
             |||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 83499 acctgggagaagtaaggagcgagg-aaccgttgatcatctaaaaaggatagcatgcagct 83557

                                                                   
Query: 608   aaccaagcaaactgcatttgcttgaatgaccggccaaggtgcatcaaatgcctg 661
              ||||||||||||||||||||||  ||||| ||||||||||||||||| |||||
Sbjct: 83558 caccaagcaaactgcatttgctttgatgactggccaaggtgcatcaaacgcctg 83611



 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Plus

                                                                         
Query: 451   gttagacctctttatcaggaggcccaatgcagaagatgctgctgctcgaacaacggcctc 510
             |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||
Sbjct: 83324 gttagacctctttatcagaaggcccagtgcagaagatgatgctgctcgaacaactgcatc 83383

                                              
Query: 511   tggtgattggctcattctaccaaccaacatagc 543
             |||||||||||||| |||||| ||||| |||||
Sbjct: 83384 tggtgattggctcagtctaccgaccaaaatagc 83416



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                 
Query: 658   cctggatagcagattctaggtagctgtcaactctggcaggagatagtcgaca 709
             |||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct: 83676 cctggatagcagattcaaagtagctgtcgactctggcaggagatagtcgaca 83727

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  139 bits (70), Expect = 1e-29
 Identities = 104/114 (91%), Gaps = 1/114 (0%)
 Strand = Plus / Minus

                                                                           
Query: 548     acctgggagaagtaaggagcaagggaagcgttgatcatccaaaaaggatagcatgcaact 607
               |||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| ||
Sbjct: 2586705 acctgggagaagtaaggagcgagg-aaccgttgatcatctaaaaaggatagcatgcagct 2586647

                                                                     
Query: 608     aaccaagcaaactgcatttgcttgaatgaccggccaaggtgcatcaaatgcctg 661
                ||||||||||||||||||||||  ||||| ||||||||||||||||| |||||
Sbjct: 2586646 caccaagcaaactgcatttgctttgatgactggccaaggtgcatcaaacgcctg 2586593



 Score =  121 bits (61), Expect = 3e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                           
Query: 451     gttagacctctttatcaggaggcccaatgcagaagatgctgctgctcgaacaacggcctc 510
               |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || ||
Sbjct: 2586880 gttagacctctttatcagaaggcccagtgcagaagatgatgctgctcgaacaactgcatc 2586821

                                                
Query: 511     tggtgattggctcattctaccaaccaacatagc 543
               |||||||||||||| |||||| ||||| |||||
Sbjct: 2586820 tggtgattggctcagtctaccgaccaaaatagc 2586788



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                   
Query: 658     cctggatagcagattctaggtagctgtcaactctggcaggagatagtcgaca 709
               |||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct: 2586528 cctggatagcagattcaaagtagctgtcgactctggcaggagatagtcgaca 2586477

to top

>dbj|AK062333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D12, full
           insert sequence
          Length = 444

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 451 gttagacctctttatcaggaggcccaatgcagaagatgctgctgctcgaacaac 504
           |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 62  gttagacctctttatcagaaggcccagtgcagaagatgatgctgctcgaacaac 9

to top

>gb|AY104595.1| Zea mays PCO064868 mRNA sequence
          Length = 896

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                       
Query: 413 tctgttcgatcaaaccgtgaactcaatgacttgagcatgttagacctctttatcaggagg 472
           |||| ||||||| | ||||||  || |||| | ||||||||||| ||||| ||||| | |
Sbjct: 184 tctgctcgatcatatcgtgaaaccagtgacctcagcatgttagatctcttgatcagaatg 243

                                                              
Query: 473 cccaatgcagaagatgctgctgctcgaacaacggcctctggtgattggctc 523
           ||||  ||||| ||||||| |||||||||||  || ||||| |||||||||
Sbjct: 244 cccagcgcagacgatgctgatgctcgaacaattgcgtctggcgattggctc 294

to top

>ref|XM_447948.1| Candida glabrata CBS138, CAGL0J05588g partial mRNA
          Length = 306

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 121 caagcaatcaacgaactgcgacagtc 146
           ||||||||||||||||||||| ||||
Sbjct: 88  caagcaatcaacgaactgcgagagtc 113

to top

>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 121    caagcaatcaacgaactgcgacagtc 146
              ||||||||||||||||||||| ||||
Sbjct: 531708 caagcaatcaacgaactgcgagagtc 531683

to top

>ref|NM_129236.1| Arabidopsis thaliana unknown protein AT2G36810 mRNA, complete cds
          Length = 3216

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 620  tgcatttgcttgaatgaccggccaaggtgcatcaaatgcctggat 664
            |||||| || ||||| || ||||| ||||||||||| ||||||||
Sbjct: 2967 tgcattcgcctgaattactggccacggtgcatcaaaagcctggat 2923

to top

>emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on chromosome 1 Contains the 3'
              end of the PBX1 gene for pre-B-cell leukemia transcription
              factor 1 and a ribosomal protein L35a (RPL35A) pseudogene,
              complete sequence
          Length = 197482

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    attaaactctgtacatgtaca 271
              |||||||||||||||||||||
Sbjct: 179471 attaaactctgtacatgtaca 179451

to top

>gb|BT008796.1| Arabidopsis thaliana At2g36810 gene, complete cds
          Length = 2172

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 620  tgcatttgcttgaatgaccggccaaggtgcatcaaatgcctggat 664
            |||||| || ||||| || ||||| ||||||||||| ||||||||
Sbjct: 1923 tgcattcgcctgaattactggccacggtgcatcaaaagcctggat 1879

to top

>gb|BT002534.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 2475

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 620  tgcatttgcttgaatgaccggccaaggtgcatcaaatgcctggat 664
            |||||| || ||||| || ||||| ||||||||||| ||||||||
Sbjct: 1966 tgcattcgcctgaattactggccacggtgcatcaaaagcctggat 1922

to top

>ref|XM_521107.1| PREDICTED: Pan troglodytes similar to KIF4A protein (LOC465686), mRNA
          Length = 1815

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 1243 ccatttggctttgctgcagc 1224

to top

>gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete sequence
          Length = 174404

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    tgtacaatcaacactaaaga 169
              ||||||||||||||||||||
Sbjct: 174259 tgtacaatcaacactaaaga 174278

to top

>ref|XM_590708.2| PREDICTED: Bos taurus similar to Golgi coiled-coil protein 1
           (LOC539985), mRNA
          Length = 2328

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 gcagcctcttcttgaagctc 363
           ||||||||||||||||||||
Sbjct: 983 gcagcctcttcttgaagctc 964

to top

>gb|AC008194.9| Drosophila melanogaster clone BACR49A05, complete sequence
          Length = 181437

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tgtacaatcaacactaaaga 169
             ||||||||||||||||||||
Sbjct: 63376 tgtacaatcaacactaaaga 63395

to top

>ref|XM_549061.2| PREDICTED: Canis familiaris similar to Chromosome-associated kinesin
            KIF4A (Chromokinesin) (LOC491941), mRNA
          Length = 4377

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2921 ccatttggctttgctgcagc 2902

to top

>ref|XM_976043.1| PREDICTED: Mus musculus RIKEN cDNA 4930463M05 gene (4930463M05Rik),
            mRNA
          Length = 4168

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2833 ccatttggctttgctgcagc 2814

to top

>ref|XM_981487.1| PREDICTED: Mus musculus RIKEN cDNA 4930463M05 gene (4930463M05Rik),
            mRNA
          Length = 4267

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2932 ccatttggctttgctgcagc 2913

to top

>ref|XM_909198.2| PREDICTED: Mus musculus RIKEN cDNA 4930463M05 gene (4930463M05Rik),
            mRNA
          Length = 4267

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2932 ccatttggctttgctgcagc 2913

to top

>emb|CR753817.13| Zebrafish DNA sequence from clone DKEY-195M11 in linkage group 6,
              complete sequence
          Length = 236737

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    atgcagaagatgctgctgct 496
              ||||||||||||||||||||
Sbjct: 215859 atgcagaagatgctgctgct 215840

to top

>gb|AC132142.3| Mus musculus BAC clone RP23-75I5 from chromosome 7, complete sequence
          Length = 221548

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   tctccatgctgagaactctg 405
             ||||||||||||||||||||
Sbjct: 91575 tctccatgctgagaactctg 91594

to top

>gb|BC050548.1| Homo sapiens kinesin family member 4A, mRNA (cDNA clone MGC:57639
            IMAGE:4538604), complete cds
          Length = 3586

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2872 ccatttggctttgctgcagc 2853

to top

>emb|AL670729.19| Human DNA sequence from clone RP11-245P10 on chromosome 1 Contains the
             3' end of the OBSCN gene for obscurin cytoskeletal
             calmodulin and titin-interacting RhoGEF protein, a novel
             protein, the TRIM11 gene for tripartite motif-containing
             11 protein, the 5' end of a novel transcript, the 3' end
             of the TRIM17 gene for tripartite motif-containing 17
             protein and three CpG islands, complete sequence
          Length = 62164

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   ggctttgctgcagcctcttc 354
             ||||||||||||||||||||
Sbjct: 18680 ggctttgctgcagcctcttc 18699

to top

>emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23,
             complete sequence
          Length = 125999

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   ccatttggctttgctgcagc 348
             ||||||||||||||||||||
Sbjct: 27166 ccatttggctttgctgcagc 27147

to top

>emb|AL031178.1|HS341E18 Human DNA sequence from clone RP3-341E18 on chromosome 6p11.2-12.3
             Contains the KIAA0936 gene for a MAK-related kinase, a
             novel gene for NY-REN-57 antigen and CpG islands, complete
             sequence
          Length = 92558

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   aaatgtacaggcaggcagca 245
             ||||||||||||||||||||
Sbjct: 12459 aaatgtacaggcaggcagca 12478

to top

>emb|AL023655.1|HS242N11 Human DNA sequence from clone RP1-242N11 on chromosome 6p22.3-23,
              complete sequence
          Length = 167514

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     attacatgcttactgaacac 109
              ||||||||||||||||||||
Sbjct: 130669 attacatgcttactgaacac 130688

to top

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 554     gagaagtaaggagcaagggaagcg 577
               |||| |||||||||||||||||||
Sbjct: 1298004 gagacgtaaggagcaagggaagcg 1298027

to top

>emb|AJ271784.1|HSA271784 Homo sapiens mRNA for Chromokinesin (KIF 4 gene)
          Length = 3705

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2836 ccatttggctttgctgcagc 2817

to top

>emb|BX470134.5| Zebrafish DNA sequence from clone CH211-144C15 in linkage group 6,
             complete sequence
          Length = 91865

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   atgcagaagatgctgctgct 496
             ||||||||||||||||||||
Sbjct: 81951 atgcagaagatgctgctgct 81970

to top

>emb|BX324135.14| Zebrafish DNA sequence from clone DKEY-16J16, complete sequence
          Length = 229936

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    gattacttctattgttctcc 321
              ||||||||||||||||||||
Sbjct: 175742 gattacttctattgttctcc 175723

to top

>ref|NM_012310.2| Homo sapiens kinesin family member 4A (KIF4A), mRNA
          Length = 4348

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2890 ccatttggctttgctgcagc 2871

to top

>dbj|AK024266.1| Homo sapiens cDNA FLJ14204 fis, clone NT2RP3003138, highly similar to
            Homo sapiens kinesin superfamily motor KIF4 mRNA
          Length = 2608

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 1177 ccatttggctttgctgcagc 1158

to top

>dbj|AK022717.1| Homo sapiens cDNA FLJ12655 fis, clone NT2RM4002109, highly similar to
            Homo sapiens mRNA for Chromokinesin (KIF 4 gene)
          Length = 2572

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 1778 ccatttggctttgctgcagc 1759

to top

>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete
             sequence
          Length = 129667

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   attatctctctatgctctat 209
             ||||||||||||||||||||
Sbjct: 46972 attatctctctatgctctat 46991

to top

>gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, complete sequence
          Length = 155180

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 533    accaacatagcgaaaacctg 552
              ||||||||||||||||||||
Sbjct: 148996 accaacatagcgaaaacctg 149015

to top

>gb|AF071592.2|AF071592 Homo sapiens kinesin superfamily motor KIF4 mRNA, complete cds
          Length = 4348

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2890 ccatttggctttgctgcagc 2871

to top

>ref|XM_234487.2| PREDICTED: Rattus norvegicus similar to kinesin family member 4A
            (LOC299255), mRNA
          Length = 3742

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2821 ccatttggctttgctgcagc 2802

to top

>gb|AF277375.1|AF277375 Homo sapiens chromokinesin mRNA, partial cds
          Length = 3887

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2449 ccatttggctttgctgcagc 2430

to top

>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11,
             complete sequence
          Length = 234851

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 297   gcttcgattacttctattgttctc 320
             |||| |||||||||||||||||||
Sbjct: 49817 gctttgattacttctattgttctc 49794

to top

>gb|AC007489.3|AC007489 Homo sapiens chromosome 16 clone RP11-122K22, complete sequence
          Length = 180401

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 533   accaacatagcgaaaacctg 552
             ||||||||||||||||||||
Sbjct: 22657 accaacatagcgaaaacctg 22676

to top

>dbj|AB025608.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14B15
          Length = 83689

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   tctctatgctctattgttga 215
             ||||||||||||||||||||
Sbjct: 11805 tctctatgctctattgttga 11824

to top

>dbj|AK000638.1| Homo sapiens cDNA FLJ20631 fis, clone KAT03761, highly similar to
           AF071592 Homo sapiens kinesin superfamily motor KIF4
           mRNA
          Length = 1813

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 ccatttggctttgctgcagc 348
           ||||||||||||||||||||
Sbjct: 347 ccatttggctttgctgcagc 328

to top

>gb|AF179308.1|AF179308 Homo sapiens KIF4 (KIF4) mRNA, complete cds
          Length = 3771

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2830 ccatttggctttgctgcagc 2811

to top

>gb|AE003511.4| Drosophila melanogaster chromosome X, section 63 of 74 of the complete
             sequence
          Length = 297969

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   tgtacaatcaacactaaaga 169
             ||||||||||||||||||||
Sbjct: 51758 tgtacaatcaacactaaaga 51777

to top

>gb|AF047975.1|AF047975 Arabidopsis thaliana putative ethylene receptor (ETR2) gene, complete
            cds
          Length = 7403

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  tctctatgctctattgttga 215
            ||||||||||||||||||||
Sbjct: 1398 tctctatgctctattgttga 1417

to top

>emb|BX572639.11| Zebrafish DNA sequence from clone CH211-209J5 in linkage group 11,
             complete sequence
          Length = 145689

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 297   gcttcgattacttctattgttctc 320
             |||| |||||||||||||||||||
Sbjct: 10803 gctttgattacttctattgttctc 10780

to top

>gb|AC122507.5| Mus musculus BAC clone RP24-426K19 from 12, complete sequence
          Length = 188715

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   ccatttggctttgctgcagc 348
             ||||||||||||||||||||
Sbjct: 86009 ccatttggctttgctgcagc 85990

to top

>gb|DQ120633.1| Hylobates lar KIF4B gene, partial cds
          Length = 3556

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2830 ccatttggctttgctgcagc 2811

to top

>gb|DQ120631.1| Gorilla gorilla KIF4B gene, partial cds
          Length = 3556

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2830 ccatttggctttgctgcagc 2811

to top

>gb|DQ120630.1| Pan troglodytes KIF4B gene, partial cds
          Length = 3556

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2830 ccatttggctttgctgcagc 2811

to top

>dbj|AB208797.1| Homo sapiens mRNA for Chromosome-associated kinesin KIF4A variant
            protein
          Length = 4301

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccatttggctttgctgcagc 348
            ||||||||||||||||||||
Sbjct: 2873 ccatttggctttgctgcagc 2854


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,811,868
Number of Sequences: 3902068
Number of extensions: 5811868
Number of successful extensions: 103137
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102913
Number of HSP's gapped (non-prelim): 219
length of query: 711
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 688
effective length of database: 17,143,297,704
effective search space: 11794588820352
effective search space used: 11794588820352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result