>NHR35_CAEEL (Q17771) Nuclear hormone receptor family member nhr-35|
          Length = 542

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +3

Query: 111 RNPCQLATE---GSSDVCNPTLPALAARSSKASAVTQNNESA-----TDGYMWMPARGTG 266
           + PC +  +   GS D+C+P    L   S+ +++ T ++ +A     TD  M M   GT 
Sbjct: 448 QTPCSIMNDTPSGSQDMCSPCPEDLLRTSTSSNSPTNSSLTAGLLLKTDDAM-MSGIGTQ 506

Query: 267 YATPHEITPDATGCLHYGFP 326
           Y TP   TP      H   P
Sbjct: 507 YTTPQPHTPQFADSSHLNLP 526

>GRPE_HAEDU (Q7VMB7) Protein grpE (HSP-70 cofactor)|
          Length = 198

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 595 MELTSEEFLLSCSGFDPKTLGRLSDLIARSLHQDI---PDDDSEQLNQKQIIASGY 437
           +E+T +EF+ + + F  + +G + D+    LHQ I   P ++ E  +  Q++  GY
Sbjct: 127 VEMTHKEFVSTLAKFGIEAIGEIGDVFNPELHQAISMQPAENIEANHLSQVLQKGY 182

>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)|
           ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100
           OAS) (p100OAS)
          Length = 1087

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 141 NPQWLAGMGFSLHWITLSDRLAEMLDHICFL 49
           +P W  G G + HW  L+   A   DH CFL
Sbjct: 300 DPTWDLGNGAAWHWDLLAQEAASCYDHPCFL 330

>TWK7_CAEEL (P34410) TWiK family of potassium channels protein 7|
          Length = 557

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/72 (27%), Positives = 29/72 (40%)
 Frame = -1

Query: 258 PSPASTCSRRWLTRYSV*RPMPYLNALLGQAG*GCKHHLNPQWLAGMGFSLHWITLSDRL 79
           P P +   R W   +S+   +P     +   G     HL   WL G    L ++ LS   
Sbjct: 286 PVPVTNIGRIWCILFSL-LGIPLTLVTIADLGKFLSEHL--VWLYGNYLKLKYLILSRHR 342

Query: 78  AEMLDHICFLCH 43
            E  +H+C  CH
Sbjct: 343 KERREHVCEHCH 354

>TOP1M_HUMAN (Q969P6) DNA topoisomerase I, mitochondrial precursor (EC 5.99.1.2)|
           (TOP1mt)
          Length = 601

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 183 RSSKASAVTQNNESATDGYMW--MPARGTGYATPHEITPDATGCLHYGFPICMATFATE 353
           R+ K S      E   DG  W  +  +G  +A P+E  PD     + G P+ ++  A E
Sbjct: 33  RTQKGSGARWEKEKHEDGVKWRQLEHKGPYFAPPYEPLPDGVRFFYEGRPVRLSVAAEE 91

>HDAC4_HUMAN (P56524) Histone deacetylase 4 (HD4)|
          Length = 1084

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +1

Query: 196 HRPLHRITSQPPTATCGCRRGERVTQPRMRL-----HLMQQDACTMGSPS 330
           HRPL R  S P +AT      E  T+PR         LM +  CT GS S
Sbjct: 624 HRPLSRAQSSPASATFPVSVQEPPTKPRFTTGLVYDTLMLKHQCTCGSSS 673

>DNJBB_MOUSE (Q99KV1) DnaJ homolog subfamily B member 11 precursor|
          Length = 358

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 190 VRHRPLHRITSQPPTATCGCRRGERVTQPRMRLHLMQQDACTMGSPSVWLHSQQRTLWAE 369
           VR++P+ R    P    C CR+  R TQ       M Q+      P+V L +++RTL  E
Sbjct: 154 VRNKPVAR--QAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVE 211

>DNJBB_HUMAN (Q9UBS4) DnaJ homolog subfamily B member 11 precursor|
           (ER-associated dnaJ protein 3) (ErJ3) (ER-associated
           Hsp40 co-chaperone) (hDj9) (PWP1-interacting protein 4)
          Length = 358

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 190 VRHRPLHRITSQPPTATCGCRRGERVTQPRMRLHLMQQDACTMGSPSVWLHSQQRTLWAE 369
           VR++P+ R    P    C CR+  R TQ       M Q+      P+V L +++RTL  E
Sbjct: 154 VRNKPVAR--QAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVE 211

>GLP2R_HUMAN (O95838) Glucagon-like peptide 2 receptor precursor (GLP-2|
           receptor) (GLP-2-R) (GLP-2R)
          Length = 553

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = -3

Query: 262 VPLAGIHM*PSVADSLFCVTADALLERAARAGRVGLQTSLEPSVASWHGFLTTLDY 95
           +PL G+H      + LF    D  +E  A+  R+ +Q +L    +S+HGFL  L Y
Sbjct: 391 IPLLGVH------EILFSFITDDQVEGFAKLIRLFIQLTL----SSFHGFLVALQY 436

>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)|
          Length = 2829

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/84 (26%), Positives = 33/84 (39%)
 Frame = +3

Query: 123  QLATEGSSDVCNPTLPALAARSSKASAVTQNNESATDGYMWMPARGTGYATPHEITPDAT 302
            +L     +  C+P  P+    S  A+    NNE  T G+         + +PH  TP   
Sbjct: 1797 KLNPNSENQYCDPRKPSSKKPSKVANEKIPNNEERTKGF--------AFDSPHHYTPIE- 1847

Query: 303  GCLHYGFPICMATFATENSLGRED 374
                 G P C +   + +SL  ED
Sbjct: 1848 -----GTPYCFSRNDSLSSLDFED 1866

>E78C_DROME (P45447) Ecdysone-induced protein 78C (DR-78)|
          Length = 866

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -3

Query: 676 MQALITWAGTTDASSVIMTAASLCTMVMELTSEEFLLSCSGFDPKTLGRLSDLIARSLHQ 497
           + AL+ +A T +A  +  T   L + ++ L S+   LS    +PK +GR  +L+A +L  
Sbjct: 745 VNALLNFANTLNAYGLSDTEIGLFSAMVLLASDRAGLS----EPKVIGRARELVAEALRV 800

Query: 496 DI 491
            I
Sbjct: 801 QI 802


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,546,183
Number of Sequences: 219361
Number of extensions: 2094252
Number of successful extensions: 5262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5253
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)