ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20l04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_466202.1| Oryza sativa (japonica cultivar-group), mRNA 274 3e-70
2dbj|AK108057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
4dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
6emb|AL355585.15| Human DNA sequence from clone RP11-535I8 on chr... 46 0.14
7ref|XM_968779.1| PREDICTED: Tribolium castaneum similar to CG637... 42 2.2
8gb|AC138908.3| Homo sapiens chromosome 5 clone RP11-615D2, compl... 42 2.2
9gb|AC008851.7| Homo sapiens chromosome 5 clone CTD-2173D20, comp... 42 2.2
10gb|AC182740.1| Gasterosteus aculeatus clone VMRC26-91C14, comple... 42 2.2
11gb|AC090839.1|AC090839 Caenorhabditis briggsae cosmid CB022O18, ... 42 2.2
12gb|AC138850.2| Homo sapiens chromosome 5 clone RP11-1308P14, com... 42 2.2
13gb|AC154249.2| Mus musculus BAC clone RP24-188L2 from chromosome... 42 2.2
14gb|AC084470.1|AC084470 Caenorhabditis briggsae cosmid CB046D05, ... 42 2.2
15gb|AC084441.1|AC084441 Caenorhabditis briggsae cosmid CB006B21, ... 42 2.2
16gb|AC138832.2| Homo sapiens chromosome 5 clone RP11-1174L13, com... 42 2.2
17gb|AC108106.4| Homo sapiens chromosome 5 clone RP11-214M1, compl... 42 2.2
18gb|AC138948.2| Homo sapiens chromosome 5 clone RP11-800G17, comp... 42 2.2
19gb|AC138817.2| Homo sapiens chromosome 5 clone RP11-1099E10, com... 42 2.2
20emb|AJ279131.1|HSA279131 Homo sapiens partial TFNR gene for tran... 42 2.2
21gb|M64308.1|CELTCB2 Caenorhabditis briggsae transposon encoding ... 42 2.2
22dbj|AB033067.1| Homo sapiens mRNA for KIAA1241 protein, partial cds 42 2.2
23emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on ch... 42 2.2
24gb|AC119406.6| Trypanosoma brucei chromosome 8 clone RPCI93-28L1... 40 8.7
25gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 8.7
26gb|AC117118.4| Rattus norvegicus 1 BAC CH230-161O8 (Children's H... 40 8.7
27gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome... 40 8.7
28gb|AC093516.5| Homo sapiens chromosome 16 clone CTD-2537L13, com... 40 8.7
29gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cance... 40 8.7
30gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosom... 40 8.7
31ref|XM_758977.1| Theileria parva strain Muguga chromosome 4 hypo... 40 8.7
32gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 40 8.7
33emb|AL033538.1|HS477H23 Human DNA sequence from clone RP3-477H23... 40 8.7
34gb|AC008534.7| Homo sapiens chromosome 5 clone CTC-484P3, comple... 40 8.7
35gb|AC159907.3| Pan troglodytes BAC clone CH251-286G18 from chrom... 40 8.7
36emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in... 40 8.7
37gb|AC026712.7| Homo sapiens chromosome 5 clone CTD-2121K20, comp... 40 8.7
38gb|AC022132.6| Homo sapiens chromosome 5 clone CTD-2201J22, comp... 40 8.7
39gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, comp... 40 8.7
40dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 8.7
41gb|AC105940.2| Homo sapiens chromosome 1 clone RP11-335O13, comp... 40 8.7
42gb|AY065986.1| Mycoplasma gallisepticum strain S6PFM macrophage-... 40 8.7
43gb|AC008768.8| Homo sapiens chromosome 5 clone CTD-2005G16, comp... 40 8.7
44gb|AC011413.3| Homo sapiens chromosome 5 clone CTB-82M23, comple... 40 8.7
45gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chrom... 40 8.7
46gb|AC011347.6| Homo sapiens chromosome 5 clone CTC-295J22, compl... 40 8.7
47gb|AY065985.1| Mycoplasma gallisepticum strain ts-11 DNA repair ... 40 8.7
48gb|AF241359.1|AF241359 Enterovirus CA55-1988, complete genome 40 8.7
49gb|AC108219.3| Homo sapiens BAC clone RP11-730G16 from 2, comple... 40 8.7
50gb|AC092169.4| Homo sapiens BAC clone RP11-791I11 from 2, comple... 40 8.7
51gb|AC013440.7| Homo sapiens BAC clone RP11-292A20 from 2, comple... 40 8.7
52emb|BX640542.3| Human DNA sequence from clone RP13-109G9 on chro... 40 8.7
53ref|XM_314361.2| Anopheles gambiae str. PEST ENSANGP00000013112 ... 40 8.7
54ref|XM_558289.1| Anopheles gambiae str. PEST ENSANGP00000028582 ... 40 8.7
55ref|XM_560842.1| Anopheles gambiae str. PEST ENSANGP00000028632 ... 40 8.7
56ref|XM_307385.2| Anopheles gambiae str. PEST ENSANGP00000012907 ... 40 8.7
57ref|XM_560938.1| Anopheles gambiae str. PEST ENSANGP00000025970 ... 40 8.7
58ref|XM_307026.2| Anopheles gambiae str. PEST ENSANGP00000011849 ... 40 8.7
59gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complet... 40 8.7
60emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in... 40 8.7
61emb|CR925835.5| Zebrafish DNA sequence from clone DKEY-86E23 in ... 40 8.7
62emb|CR847568.13| Zebrafish DNA sequence from clone DKEYP-74C2 in... 40 8.7
63gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome 40 8.7
64dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.7
65gb|AC154560.3| Mus musculus BAC clone RP23-400E20 from chromosom... 40 8.7
66emb|AL008724.1|HSB107C2 Human DNA sequence from clone SC22CB-107... 40 8.7
67gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 40 8.7
68emb|AL627229.10| Mouse DNA sequence from clone RP23-354L19 on ch... 40 8.7
69gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, compl... 40 8.7
70gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, comple... 40 8.7 
>ref|XM_466202.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1722

 Score =  274 bits (138), Expect = 3e-70
 Identities = 285/334 (85%)
 Strand = Plus / Minus

                                                                        
Query: 307  aagtcatcgtcaacatcatatgcggggttgcataagcacctaaatagcctgccaattccc 366
            ||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct: 1412 aagtcatcgtcaacatcatatgctgggttgcataagcatctgaataacctgccaattccc 1353

                                                                        
Query: 367  tgagtaagcgcaggagtccgatatgtcactgcccgtgatgcctcctcgtctgaactttca 426
            |||||||  |||||||||||||| | ||||| ||| |   | || || ||||||||||||
Sbjct: 1352 tgagtaactgcaggagtccgataaggcactgtccgagccacgtcgtcatctgaactttca 1293

                                                                        
Query: 427  tctgagctgctgtcatcatcgagaacggttggctttgatggccctggtaatgcctccttt 486
            || |||||||||||||||||||||| ||| || |||||||| ||||| ||||||||||| 
Sbjct: 1292 tcagagctgctgtcatcatcgagaatggtcggttttgatggtcctggcaatgcctccttg 1233

                                                                        
Query: 487  tctctctgaaatatttttccgagatttctcaaggccattgcacgggctttaagatcctct 546
            || ||||| ||||| || || ||| || |||  ||||||||||| || || |||||||||
Sbjct: 1232 tccctctggaatatcttcccaagaattttcagtgccattgcacgagccttgagatcctct 1173

                                                                        
Query: 547  ttcttgacattattttcatgcaacaccatttcacagacatgcaagagcgtgacttcaata 606
            ||||||||||| ||||||||||||||||||||||| || || |  || || |||||||||
Sbjct: 1172 ttcttgacattgttttcatgcaacaccatttcacaaacgtgtagaagggtcacttcaata 1113

                                              
Query: 607  tccacaacgttgagcttccagattgagctcatca 640
            || ||||  || |||||||| | |||||||||||
Sbjct: 1112 tcaacaatattcagcttccacagtgagctcatca 1079
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>dbj|AK108057.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A01, full
            insert sequence
          Length = 1722

 Score =  274 bits (138), Expect = 3e-70
 Identities = 285/334 (85%)
 Strand = Plus / Minus

                                                                        
Query: 307  aagtcatcgtcaacatcatatgcggggttgcataagcacctaaatagcctgccaattccc 366
            ||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct: 1412 aagtcatcgtcaacatcatatgctgggttgcataagcatctgaataacctgccaattccc 1353

                                                                        
Query: 367  tgagtaagcgcaggagtccgatatgtcactgcccgtgatgcctcctcgtctgaactttca 426
            |||||||  |||||||||||||| | ||||| ||| |   | || || ||||||||||||
Sbjct: 1352 tgagtaactgcaggagtccgataaggcactgtccgagccacgtcgtcatctgaactttca 1293

                                                                        
Query: 427  tctgagctgctgtcatcatcgagaacggttggctttgatggccctggtaatgcctccttt 486
            || |||||||||||||||||||||| ||| || |||||||| ||||| ||||||||||| 
Sbjct: 1292 tcagagctgctgtcatcatcgagaatggtcggttttgatggtcctggcaatgcctccttg 1233

                                                                        
Query: 487  tctctctgaaatatttttccgagatttctcaaggccattgcacgggctttaagatcctct 546
            || ||||| ||||| || || ||| || |||  ||||||||||| || || |||||||||
Sbjct: 1232 tccctctggaatatcttcccaagaattttcagtgccattgcacgagccttgagatcctct 1173

                                                                        
Query: 547  ttcttgacattattttcatgcaacaccatttcacagacatgcaagagcgtgacttcaata 606
            ||||||||||| ||||||||||||||||||||||| || || |  || || |||||||||
Sbjct: 1172 ttcttgacattgttttcatgcaacaccatttcacaaacgtgtagaagggtcacttcaata 1113

                                              
Query: 607  tccacaacgttgagcttccagattgagctcatca 640
            || ||||  || |||||||| | |||||||||||
Sbjct: 1112 tcaacaatattcagcttccacagtgagctcatca 1079
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Plus

                                                                            
Query: 360      aattccctgagtaagcgcaggagtccgatatgtcactgcccgtgatgcctcctcgtctga 419
                |||| |||||||||  |||||||||||||| | ||||| ||| |   | || || |||||
Sbjct: 21014255 aattgcctgagtaactgcaggagtccgataaggcactgtccgagccacgtcgtcatctga 21014314

                                                                            
Query: 420      actttcatctgagctgctgtcatcatcgagaacggttggctttgatggccctggtaatgc 479
                ||||||||| |||||||||||||||||||||| ||| || |||||||| ||||| |||||
Sbjct: 21014315 actttcatcagagctgctgtcatcatcgagaatggtcggttttgatggtcctggcaatgc 21014374

                               
Query: 480      ctccttttctctctg 494
                |||||| || |||||
Sbjct: 21014375 ctccttgtccctctg 21014389



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                            
Query: 307      aagtcatcgtcaacatcatatgcggggttgcataagcacctaaatagcctgccaattccc 366
                ||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct: 21014109 aagtcatcgtcaacatcatatgctgggttgcataagcatctgaataacctgccaattccc 21014168

                   
Query: 367      tga 369
                |||
Sbjct: 21014169 tga 21014171



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 520      gccattgcacgggctttaagatcctctttcttgacattattttcatgcaacacc 573
                ||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 21014520 gccattgcacgagccttgagatcctctttcttgacattgttttcatgcaacacc 21014573
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470G10
          Length = 145419

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Plus

                                                                          
Query: 360    aattccctgagtaagcgcaggagtccgatatgtcactgcccgtgatgcctcctcgtctga 419
              |||| |||||||||  |||||||||||||| | ||||| ||| |   | || || |||||
Sbjct: 137727 aattgcctgagtaactgcaggagtccgataaggcactgtccgagccacgtcgtcatctga 137786

                                                                          
Query: 420    actttcatctgagctgctgtcatcatcgagaacggttggctttgatggccctggtaatgc 479
              ||||||||| |||||||||||||||||||||| ||| || |||||||| ||||| |||||
Sbjct: 137787 actttcatcagagctgctgtcatcatcgagaatggtcggttttgatggtcctggcaatgc 137846

                             
Query: 480    ctccttttctctctg 494
              |||||| || |||||
Sbjct: 137847 ctccttgtccctctg 137861



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                          
Query: 307    aagtcatcgtcaacatcatatgcggggttgcataagcacctaaatagcctgccaattccc 366
              ||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct: 137581 aagtcatcgtcaacatcatatgctgggttgcataagcatctgaataacctgccaattccc 137640

                 
Query: 367    tga 369
              |||
Sbjct: 137641 tga 137643



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                    
Query: 520    gccattgcacgggctttaagatcctctttcttgacattattttcatgcaacacc 573
              ||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 137992 gccattgcacgagccttgagatcctctttcttgacattgttttcatgcaacacc 138045
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>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_F08
          Length = 105979

 Score =  101 bits (51), Expect = 3e-18
 Identities = 114/135 (84%)
 Strand = Plus / Plus

                                                                         
Query: 360   aattccctgagtaagcgcaggagtccgatatgtcactgcccgtgatgcctcctcgtctga 419
             |||| |||||||||  |||||||||||||| | ||||| ||| |   | || || |||||
Sbjct: 16000 aattgcctgagtaactgcaggagtccgataaggcactgtccgagccacgtcgtcatctga 16059

                                                                         
Query: 420   actttcatctgagctgctgtcatcatcgagaacggttggctttgatggccctggtaatgc 479
             ||||||||| |||||||||||||||||||||| ||| || |||||||| ||||| |||||
Sbjct: 16060 actttcatcagagctgctgtcatcatcgagaatggtcggttttgatggtcctggcaatgc 16119

                            
Query: 480   ctccttttctctctg 494
             |||||| || |||||
Sbjct: 16120 ctccttgtccctctg 16134



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                         
Query: 307   aagtcatcgtcaacatcatatgcggggttgcataagcacctaaatagcctgccaattccc 366
             ||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct: 15854 aagtcatcgtcaacatcatatgctgggttgcataagcatctgaataacctgccaattccc 15913

                
Query: 367   tga 369
             |||
Sbjct: 15914 tga 15916



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 520   gccattgcacgggctttaagatcctctttcttgacattattttcatgcaacacc 573
             ||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct: 16265 gccattgcacgagccttgagatcctctttcttgacattgttttcatgcaacacc 16318
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>emb|AL355585.15| Human DNA sequence from clone RP11-535I8 on chromosome 9 Contains a
             meningioma expressed antigen 6 (coiled-coil proline-rich)
             (MGEA6) pseudogene, complete sequence
          Length = 76321

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 542   cctctttcttgacattattttca 564
             |||||||||||||||||||||||
Sbjct: 59457 cctctttcttgacattattttca 59435
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>ref|XM_968779.1| PREDICTED: Tribolium castaneum similar to CG6375-PB, isoform B
            (LOC662696), mRNA
          Length = 1890

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 574  atttcacagacatgcaagagc 594
            |||||||||||||||||||||
Sbjct: 1171 atttcacagacatgcaagagc 1151
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>gb|AC138908.3| Homo sapiens chromosome 5 clone RP11-615D2, complete sequence
          Length = 201419

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 483    cttttctctctgaaatatttt 503
              |||||||||||||||||||||
Sbjct: 100792 cttttctctctgaaatatttt 100772
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>gb|AC008851.7| Homo sapiens chromosome 5 clone CTD-2173D20, complete sequence
          Length = 130416

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   cttttctctctgaaatatttt 503
             |||||||||||||||||||||
Sbjct: 81452 cttttctctctgaaatatttt 81432
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>gb|AC182740.1| Gasterosteus aculeatus clone VMRC26-91C14, complete sequence
          Length = 160244

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     caatcaaacatggtctatttc 82
              |||||||||||||||||||||
Sbjct: 110110 caatcaaacatggtctatttc 110090
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>gb|AC090839.1|AC090839 Caenorhabditis briggsae cosmid CB022O18, complete sequence
          Length = 74100

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     attttctattattatttttcg 22
             |||||||||||||||||||||
Sbjct: 22225 attttctattattatttttcg 22205
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>gb|AC138850.2| Homo sapiens chromosome 5 clone RP11-1308P14, complete sequence
          Length = 188885

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 483  cttttctctctgaaatatttt 503
            |||||||||||||||||||||
Sbjct: 5709 cttttctctctgaaatatttt 5689
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>gb|AC154249.2| Mus musculus BAC clone RP24-188L2 from chromosome 14, complete sequence
          Length = 149132

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 546    tttcttgacattattttcatg 566
              |||||||||||||||||||||
Sbjct: 141276 tttcttgacattattttcatg 141256
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>gb|AC084470.1|AC084470 Caenorhabditis briggsae cosmid CB046D05, complete sequence
          Length = 53755

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     attttctattattatttttcg 22
             |||||||||||||||||||||
Sbjct: 30166 attttctattattatttttcg 30186
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>gb|AC084441.1|AC084441 Caenorhabditis briggsae cosmid CB006B21, complete sequence
          Length = 70807

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     attttctattattatttttcg 22
             |||||||||||||||||||||
Sbjct: 27337 attttctattattatttttcg 27357
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>gb|AC138832.2| Homo sapiens chromosome 5 clone RP11-1174L13, complete sequence
          Length = 225384

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 483    cttttctctctgaaatatttt 503
              |||||||||||||||||||||
Sbjct: 106159 cttttctctctgaaatatttt 106179
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>gb|AC108106.4| Homo sapiens chromosome 5 clone RP11-214M1, complete sequence
          Length = 160701

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 483    cttttctctctgaaatatttt 503
              |||||||||||||||||||||
Sbjct: 155837 cttttctctctgaaatatttt 155857
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>gb|AC138948.2| Homo sapiens chromosome 5 clone RP11-800G17, complete sequence
          Length = 172404

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   cttttctctctgaaatatttt 503
             |||||||||||||||||||||
Sbjct: 93573 cttttctctctgaaatatttt 93553
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>gb|AC138817.2| Homo sapiens chromosome 5 clone RP11-1099E10, complete sequence
          Length = 185785

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   cttttctctctgaaatatttt 503
             |||||||||||||||||||||
Sbjct: 76120 cttttctctctgaaatatttt 76100
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>emb|AJ279131.1|HSA279131 Homo sapiens partial TFNR gene for transcription factor-like
           nuclear regulator, exon 12
          Length = 1112

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 483 cttttctctctgaaatatttt 503
           |||||||||||||||||||||
Sbjct: 548 cttttctctctgaaatatttt 568
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>gb|M64308.1|CELTCB2 Caenorhabditis briggsae transposon encoding Tcb2, complete cds
          Length = 1607

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2    attttctattattatttttcg 22
            |||||||||||||||||||||
Sbjct: 1356 attttctattattatttttcg 1376
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>dbj|AB033067.1| Homo sapiens mRNA for KIAA1241 protein, partial cds
          Length = 5755

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 483 cttttctctctgaaatatttt 503
           |||||||||||||||||||||
Sbjct: 792 cttttctctctgaaatatttt 812
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>emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on chromosome 2, complete
              sequence
          Length = 134955

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 454    gttggctttgatggccctggt 474
              |||||||||||||||||||||
Sbjct: 105694 gttggctttgatggccctggt 105674
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>gb|AC119406.6| Trypanosoma brucei chromosome 8 clone RPCI93-28L1, complete sequence
          Length = 134874

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ttttctattattatttttcg 22
             ||||||||||||||||||||
Sbjct: 56455 ttttctattattatttttcg 56474
to top
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      ttttctattattatttttcg 22
              ||||||||||||||||||||
Sbjct: 983462 ttttctattattatttttcg 983481
to top
>gb|AC117118.4| Rattus norvegicus 1 BAC CH230-161O8 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 216036

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    atggccctggtaatgcctcc 483
              ||||||||||||||||||||
Sbjct: 159888 atggccctggtaatgcctcc 159869
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>gb|AC139572.4| Mus musculus BAC clone RP24-196P9 from chromosome 7, complete sequence
          Length = 165198

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   atggccctggtaatgcctcc 483
             ||||||||||||||||||||
Sbjct: 64313 atggccctggtaatgcctcc 64332
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>gb|AC093516.5| Homo sapiens chromosome 16 clone CTD-2537L13, complete sequence
          Length = 186814

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 464   atggccctggtaatgcctcc 483
             ||||||||||||||||||||
Sbjct: 92680 atggccctggtaatgcctcc 92661
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>gb|AC107312.9| Homo sapiens 3 BAC RP11-574E7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 138925

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 2     attttctattattatttttcgcagaaac 29
             ||||||||||||||||||| | ||||||
Sbjct: 23331 attttctattattatttttagtagaaac 23358
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>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence
          Length = 184128

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    ttctctctgaaatatttttc 505
              ||||||||||||||||||||
Sbjct: 103629 ttctctctgaaatatttttc 103610
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>ref|XM_758977.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0435) partial mRNA
          Length = 5415

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 343  cacctaaatagcctgccaat 362
            ||||||||||||||||||||
Sbjct: 2254 cacctaaatagcctgccaat 2273
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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    ttctctctgaaatatttttc 505
              ||||||||||||||||||||
Sbjct: 202836 ttctctctgaaatatttttc 202817
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>emb|AL033538.1|HS477H23 Human DNA sequence from clone RP3-477H23 on chromosome 22q12.1-12.2,
             complete sequence
          Length = 114600

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   atatgtcactgcccgtgatg 406
             ||||||||||||||||||||
Sbjct: 56358 atatgtcactgcccgtgatg 56377
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>gb|AC008534.7| Homo sapiens chromosome 5 clone CTC-484P3, complete sequence
          Length = 253402

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      attttctattattatttttc 21
              ||||||||||||||||||||
Sbjct: 175800 attttctattattatttttc 175781
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>gb|AC159907.3| Pan troglodytes BAC clone CH251-286G18 from chromosome unknown,
             complete sequence
          Length = 156488

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   atggccctggtaatgcctcc 483
             ||||||||||||||||||||
Sbjct: 25032 atggccctggtaatgcctcc 25051
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>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25,
              complete sequence
          Length = 181520

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      attttctattattatttttc 21
              ||||||||||||||||||||
Sbjct: 149786 attttctattattatttttc 149767
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>gb|AC026712.7| Homo sapiens chromosome 5 clone CTD-2121K20, complete sequence
          Length = 112085

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttgacattattttcatgcaa 569
             ||||||||||||||||||||
Sbjct: 37253 ttgacattattttcatgcaa 37234
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>gb|AC022132.6| Homo sapiens chromosome 5 clone CTD-2201J22, complete sequence
          Length = 112085

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttgacattattttcatgcaa 569
             ||||||||||||||||||||
Sbjct: 37253 ttgacattattttcatgcaa 37234
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>gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, complete sequence
          Length = 203204

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 474    taatgcctccttttctctct 493
              ||||||||||||||||||||
Sbjct: 179773 taatgcctccttttctctct 179792
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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tatggtcatgcgagtgaaaa 108
              ||||||||||||||||||||
Sbjct: 651456 tatggtcatgcgagtgaaaa 651475
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>gb|AC105940.2| Homo sapiens chromosome 1 clone RP11-335O13, complete sequence
          Length = 177140

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gattttctattattattttt 20
              ||||||||||||||||||||
Sbjct: 106367 gattttctattattattttt 106386
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>gb|AY065986.1| Mycoplasma gallisepticum strain S6PFM macrophage-activating
            lipoprotein-like protein (p47) gene, complete cds
          Length = 1795

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  atctaaagctttaactgttg 135
            ||||||||||||||||||||
Sbjct: 1070 atctaaagctttaactgttg 1051
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>gb|AC008768.8| Homo sapiens chromosome 5 clone CTD-2005G16, complete sequence
          Length = 139111

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ttgacattattttcatgcaa 569
             ||||||||||||||||||||
Sbjct: 80007 ttgacattattttcatgcaa 79988
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>gb|AC011413.3| Homo sapiens chromosome 5 clone CTB-82M23, complete sequence
          Length = 136365

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 544   tctttcttgacattattttc 563
             ||||||||||||||||||||
Sbjct: 26403 tctttcttgacattattttc 26384
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>gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chromosome unknown,
             complete sequence
          Length = 197895

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   atggccctggtaatgcctcc 483
             ||||||||||||||||||||
Sbjct: 74679 atggccctggtaatgcctcc 74698
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>gb|AC011347.6| Homo sapiens chromosome 5 clone CTC-295J22, complete sequence
          Length = 163167

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 544    tctttcttgacattattttc 563
              ||||||||||||||||||||
Sbjct: 127272 tctttcttgacattattttc 127253
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>gb|AY065985.1| Mycoplasma gallisepticum strain ts-11 DNA repair and recombination
            protein (recR) gene, partial cds; macrophage-activating
            lipoprotein-like protein (p47) gene, complete cds; and
            hemagglutinin (vlhA) gene, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  atctaaagctttaactgttg 135
            ||||||||||||||||||||
Sbjct: 1426 atctaaagctttaactgttg 1407
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>gb|AF241359.1|AF241359 Enterovirus CA55-1988, complete genome
          Length = 7411

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  acgtatatccatacccttca 194
            ||||||||||||||||||||
Sbjct: 2967 acgtatatccatacccttca 2986
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>gb|AC108219.3| Homo sapiens BAC clone RP11-730G16 from 2, complete sequence
          Length = 72133

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    attttctattattatttttc 21
            ||||||||||||||||||||
Sbjct: 9660 attttctattattatttttc 9641
to top
>gb|AC092169.4| Homo sapiens BAC clone RP11-791I11 from 2, complete sequence
          Length = 192927

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   attttcatgcaacaccattt 577
             ||||||||||||||||||||
Sbjct: 60166 attttcatgcaacaccattt 60147
to top
>gb|AC013440.7| Homo sapiens BAC clone RP11-292A20 from 2, complete sequence
          Length = 158548

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   attttcatgcaacaccattt 577
             ||||||||||||||||||||
Sbjct: 36006 attttcatgcaacaccattt 35987
to top
>emb|BX640542.3| Human DNA sequence from clone RP13-109G9 on chromosome 1, complete
              sequence
          Length = 157207

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 544    tctttcttgacattattttc 563
              ||||||||||||||||||||
Sbjct: 133626 tctttcttgacattattttc 133607
to top
>ref|XM_314361.2| Anopheles gambiae str. PEST ENSANGP00000013112
           (ENSANGG00000010623), partial mRNA
          Length = 2760

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 621 cttccagattgagctcatca 640
           ||||||||||||||||||||
Sbjct: 481 cttccagattgagctcatca 462
to top
>ref|XM_558289.1| Anopheles gambiae str. PEST ENSANGP00000028582
           (ENSANGG00000010623), partial mRNA
          Length = 2919

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 621 cttccagattgagctcatca 640
           ||||||||||||||||||||
Sbjct: 589 cttccagattgagctcatca 570
to top
>ref|XM_560842.1| Anopheles gambiae str. PEST ENSANGP00000028632
           (ENSANGG00000010418), partial mRNA
          Length = 1914

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 621 cttccagattgagctcatca 640
           ||||||||||||||||||||
Sbjct: 481 cttccagattgagctcatca 462
to top
>ref|XM_307385.2| Anopheles gambiae str. PEST ENSANGP00000012907
           (ENSANGG00000010418), partial mRNA
          Length = 2073

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 621 cttccagattgagctcatca 640
           ||||||||||||||||||||
Sbjct: 589 cttccagattgagctcatca 570
to top
>ref|XM_560938.1| Anopheles gambiae str. PEST ENSANGP00000025970
           (ENSANGG00000009360), partial mRNA
          Length = 1914

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 621 cttccagattgagctcatca 640
           ||||||||||||||||||||
Sbjct: 481 cttccagattgagctcatca 462
to top
>ref|XM_307026.2| Anopheles gambiae str. PEST ENSANGP00000011849
           (ENSANGG00000009360), partial mRNA
          Length = 2073

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 621 cttccagattgagctcatca 640
           ||||||||||||||||||||
Sbjct: 589 cttccagattgagctcatca 570
to top
>gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complete sequence
          Length = 139145

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     attttctattattatttttc 21
             ||||||||||||||||||||
Sbjct: 86832 attttctattattatttttc 86813
to top
>emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in linkage group 25,
              complete sequence
          Length = 120282

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      attttctattattatttttc 21
              ||||||||||||||||||||
Sbjct: 112183 attttctattattatttttc 112202
to top
>emb|CR925835.5| Zebrafish DNA sequence from clone DKEY-86E23 in linkage group 24,
            complete sequence
          Length = 59354

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 423  ttcatctgagctgctgtcatcatc 446
            ||||||||||||||| ||||||||
Sbjct: 3469 ttcatctgagctgctatcatcatc 3492
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>emb|CR847568.13| Zebrafish DNA sequence from clone DKEYP-74C2 in linkage group 3,
             complete sequence
          Length = 173689

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   tgcatgactccagctgttca 233
             ||||||||||||||||||||
Sbjct: 76421 tgcatgactccagctgttca 76402
to top
>gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome
          Length = 996422

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    atctaaagctttaactgttg 135
              ||||||||||||||||||||
Sbjct: 827226 atctaaagctttaactgttg 827245
to top
>dbj|AP001994.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-215D10, complete
              sequence
          Length = 167376

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 477    tgcctccttttctctctgaa 496
              ||||||||||||||||||||
Sbjct: 104047 tgcctccttttctctctgaa 104066
to top
>gb|AC154560.3| Mus musculus BAC clone RP23-400E20 from chromosome 17, complete sequence
          Length = 197657

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 535    ttaagatcctctttcttgacattatttt 562
              ||||||||||||||| | ||||||||||
Sbjct: 179848 ttaagatcctctttcattacattatttt 179875
to top
>emb|AL008724.1|HSB107C2 Human DNA sequence from clone SC22CB-107C2 on chromosome 22q11.2-12.1,
             complete sequence
          Length = 44665

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   atatgtcactgcccgtgatg 406
             ||||||||||||||||||||
Sbjct: 43622 atatgtcactgcccgtgatg 43641
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       attttctattattatttttc 21
               ||||||||||||||||||||
Sbjct: 1723159 attttctattattatttttc 1723140
to top
>emb|AL627229.10| Mouse DNA sequence from clone RP23-354L19 on chromosome 4, complete
              sequence
          Length = 149730

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      attttctattattatttttc 21
              ||||||||||||||||||||
Sbjct: 128795 attttctattattatttttc 128776
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>gb|AC093290.4| Homo sapiens chromosome 5 clone RP11-47L17, complete sequence
          Length = 179443

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 485    tttctctctgaaatattttt 504
              ||||||||||||||||||||
Sbjct: 175011 tttctctctgaaatattttt 174992
to top
>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence
          Length = 184981

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   tttctctctgaaatattttt 504
             ||||||||||||||||||||
Sbjct: 46064 tttctctctgaaatattttt 46045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,636,516
Number of Sequences: 3902068
Number of extensions: 6636516
Number of successful extensions: 139194
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138960
Number of HSP's gapped (non-prelim): 227
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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