>KIN11_ARATH (P92958) SNF1-related protein kinase catalytic alpha subunit KIN11|
           (EC 2.7.11.1) (AKIN11) (AKIN alpha1)
          Length = 512

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -3

Query: 403 LPQAEPVSSSPTAASGNRVALDDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLD 227
           LP+   VS   T     ++  +++V++V  MGF R QV  ++R  T+N   V   ++LD
Sbjct: 276 LPRYLAVSPPDTVEQAKKIN-EEIVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLLLD 333

>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase E1) (Cellulase E1)
           (Endocellulase E1)
          Length = 562

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
 Frame = -3

Query: 571 GYGPQGGSSFSETYGYTGSPSYRGNTGMKPTPFAXXXXXXXXXGNSYSTRLPTAWILPQA 392
           GY     SS  +  G + SPS + +  + P+P                T  PT  + P A
Sbjct: 386 GYLAPIKSSIFDPVGASASPSSQPSPSVSPSPSPSPSASRTPTPTPTPTASPTPTLTPTA 445

Query: 391 EPV-----SSSPTAASGNR 350
            P      + SPTAASG R
Sbjct: 446 TPTPTASPTPSPTAASGAR 464

>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 580 GAPGYGPQGGSSFSETYGYTGSPSYRGNTG 491
           G PGYGPQG      T G  G+P   G  G
Sbjct: 614 GPPGYGPQGEPGLQGTQGVPGAPGPPGEAG 643

>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000|
          Length = 395

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = -3

Query: 595 HHPSYGAPGYGPQGGSSFSETYGYTGSPSYRG-----NTGMKPTP 476
           H P YGAP     GG    + YG T  P+Y G     N G  P P
Sbjct: 294 HPPPYGAPPQNNMGGPRPPQNYGGTPPPNYGGAPPANNMGGAPPP 338

>SCAR3_MOUSE (Q8C850) Scavenger receptor class A member 3|
          Length = 606

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 580 GAPG-YGPQGGSSFSETYGYTGSPSYRGNTGMKPTP 476
           G+PG  GPQG    S   G TGSP  RG TG K  P
Sbjct: 553 GSPGPSGPQGKPGIS---GKTGSPGQRGATGPKGEP 585

>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)|
          Length = 1796

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 586  SYGAPG-YGPQGGSSFSETYGYTGSPSYRGNTGMK 485
            S GAPG  GP G   F    G  G+P  RG TG+K
Sbjct: 1664 SPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIK 1698

>YD6C_SCHPO (Q10324) Hypothetical protein C17G8.12 in chromosome I|
          Length = 608

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 222 SLSSTTFRSTFCPFSVSLRTVALTCSLENPMVATFSTTSSRATLLPDAAVGLELTGS 392
           SL S TF S F          AL+ SLE P V T S   S ++ +   +V  + TG+
Sbjct: 367 SLESNTFASDFSKVDRDATQAALSSSLETPSVLTSSYKPSSSSKVSAKSVSRKPTGA 423

>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 580 GAPGY-GPQGGSSFSETYGYTGSPSYRGNTGMKPTP 476
           G PGY GP G +      GY G P  RG  G +  P
Sbjct: 472 GEPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVP 507

>CD4_MOUSE (P06332) T-cell surface glycoprotein CD4 precursor (T-cell surface|
           antigen T4/Leu-3) (T-cell differentiation antigen L3T4)
          Length = 457

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 427 CCSYCRYPQRMVLREQKA*ASFQYFHGKKEIQCSHMFQKSYFL 555
           CC  CR+ QR   R  +     +    KK  QC H  QKS+ L
Sbjct: 417 CCVRCRHQQRQAARMSQI---KRLLSEKKTCQCPHRMQKSHNL 456

>DLG3_RAT (Q62936) Discs large homolog 3 (Synapse-associated protein 102)|
           (SAP102) (PSD-95/SAP90-related protein 1)
          Length = 849

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = -3

Query: 589 PSYG----APGYGPQGGSSFSETYGYTGSPSYRGNTGMKPTP 476
           P YG       YGP GG+  S  YG   S +     G  PTP
Sbjct: 28  PGYGDWQVPDPYGPSGGNGASSGYGGYSSQTLPSQAGATPTP 69

>DLG3_MOUSE (P70175) Discs large homolog 3 (Synapse-associated protein 102)|
           (SAP102)
          Length = 849

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = -3

Query: 589 PSYG----APGYGPQGGSSFSETYGYTGSPSYRGNTGMKPTP 476
           P YG       YGP GG+  S  YG   S +     G  PTP
Sbjct: 28  PGYGDWQVPDPYGPSGGNGASSGYGGYSSQTLPSQAGATPTP 69

>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early|
           protein IE110) (VMW110) (Alpha-0 protein)
          Length = 775

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
 Frame = -3

Query: 595 HHPSYGAPGYGPQGGSSFSETYGYTGSPSYRGNTGMKPTPFAXXXXXXXXXGNSYSTRLP 416
           H PS   PG   QGG     T     + S   ++   PTP            +S S    
Sbjct: 533 HPPSDSGPGGRGQGGPGTPLTSSAASASSSSASSSSAPTPAGAASSAAGAASSSASASSG 592

Query: 415 TA--WILPQAEPVSSSPTAASGNR 350
            A   +  + E  S  P AASG R
Sbjct: 593 GAVGALGGRQEETSLGPRAASGPR 616

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 150 KYYTQTVTNGSVACRRILTYHPFISLSSTTFRSTFCPFSVSLRTVALTCSLENPMVATFS 329
           +Y T++  + ++    + TY   +S   TT  +T+CP+S    T  LT   E   V T +
Sbjct: 379 EYITKSSISTTIPSFSMSTYFTTVS-GVTTMYTTWCPYSSESETSTLTSMHET--VTTDA 435

Query: 330 TTSSRATLLPDAAVGL 377
           T  +  + +P     L
Sbjct: 436 TVCTHESCMPSQTTSL 451

>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 586 SYGAPGY-GPQGGSSFSETYGYTGSPSYRGNTGMKPTP 476
           S G PG  GPQG +      G  G P ++G  G K  P
Sbjct: 445 SAGPPGSPGPQGSTGPQGNSGLPGDPGFKGEAGPKGEP 482

>COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor|
          Length = 1797

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 586  SYGAPG-YGPQGGSSFSETYGYTGSPSYRGNTGMK 485
            S G PG  GP G   F    G  G+P  RG TG+K
Sbjct: 1665 SPGTPGEQGPPGTPGFPGNAGVPGTPGERGLTGVK 1699

>UVRA_LEPIN (Q8F435) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 948

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 400 PQAEPVSSSPTAASGNRVALDDVVEKVATMGFSREQVRATVRRLTE-----NGQNVDLNV 236
           PQ   +       SG +    DV+EK+   GF+R ++   +R L E           + +
Sbjct: 143 PQGSKLQILAPVISGKKGEHKDVLEKIRKDGFNRVRINGEIRTLEEEIVLKKNFKTSIEI 202

Query: 235 VLDKLM 218
           V+D+++
Sbjct: 203 VVDRIV 208

>UVRA_LEPIC (Q72RM8) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 948

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -3

Query: 400 PQAEPVSSSPTAASGNRVALDDVVEKVATMGFSREQVRATVRRLTE-----NGQNVDLNV 236
           PQ   +       SG +    DV+EK+   GF+R ++   +R L E           + +
Sbjct: 143 PQGSKLQILAPVISGKKGEHKDVLEKIRKDGFNRVRINGEIRTLEEEIVLKKNFKTSIEI 202

Query: 235 VLDKLM 218
           V+D+++
Sbjct: 203 VVDRIV 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,566,011
Number of Sequences: 219361
Number of extensions: 2109355
Number of successful extensions: 6792
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6774
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)