ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags20k07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
3gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) ch... 101 3e-18
4dbj|AK103093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 101 3e-18
6ref|NM_196682.1| Oryza sativa (japonica cultivar-group) unknown ... 96 2e-16
7gb|AY111422.1| Zea mays CL9217_1 mRNA sequence 58 4e-05
8emb|CT030226.8| Mouse DNA sequence from clone RP24-98O3 on chrom... 44 0.57
9gb|AC137150.11| Mus musculus chromosome 18, clone RP23-342A15, c... 42 2.2
10gb|AC127237.3| Mus musculus BAC clone RP24-363G13 from chromosom... 42 2.2
11emb|CR933679.1| Homo sapiens mRNA; cDNA DKFZp781F1071 (from clon... 42 2.2
12gb|AC112919.5| Homo sapiens X BAC RP11-294J19 (Roswell Park Canc... 42 2.2
13gb|AC008421.6| Homo sapiens chromosome 5 clone CTC-298E16, compl... 42 2.2
14gb|AC068933.11| Homo sapiens chromosome 8, clone RP11-760J15, co... 42 2.2
15gb|AC154538.2| Mus musculus BAC clone RP23-451M23 from chromosom... 42 2.2
16gb|AC008410.6| Homo sapiens chromosome 5 clone CTC-280C13, compl... 42 2.2
17gb|AC102164.7| Mus musculus chromosome 3, clone RP23-438M14, com... 42 2.2
18gb|AY571644.1| Breviceps fuscus recombination activating protein... 42 2.2
19gb|AC159250.2| Mus musculus BAC clone RP24-196J19 from chromosom... 40 8.8
20gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, co... 40 8.8
21gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome 40 8.8
22gb|AC165079.2| Mus musculus BAC clone RP24-92K17 from chromosome... 40 8.8
23ref|XM_381034.1| Gibberella zeae PH-1 chromosome 1 predicted pro... 40 8.8
24gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, c... 40 8.8
25gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosom... 40 8.8
26gb|AY230147.1| Leishmania major clone B3559 phosphoglycan beta 1... 40 8.8
27gb|AY230146.1| Leishmania major clone B3979 phosphoglycan beta 1... 40 8.8
28gb|AY230145.1| Leishmania major clone B3558 divergent H4 histone... 40 8.8
29gb|AY230144.1| Leishmania major clone B3547 phosphoglycan beta 1... 40 8.8
30ref|XM_965298.1| PREDICTED: Tribolium castaneum similar to photo... 40 8.8
31gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosom... 40 8.8
32emb|AL035476.7|PFMAL4P3 Plasmodium falciparum MAL4P3 40 8.8
33emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, com... 40 8.8
34gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete s... 40 8.8
35gb|AC140322.4| Mus musculus BAC clone RP23-413F14 from chromosom... 40 8.8
36gb|AC012378.10| Homo sapiens chromosome 15 clone RP11-420M1 map ... 40 8.8
37dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, ... 40 8.8
38dbj|BS000235.1| Pan troglodytes chromosome 22 clone:PTB-013J17, ... 40 8.8
39dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.8
40emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 ... 40 8.8
41dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 8.8 
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041

 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                         
Query: 303   gcttcatagaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaac 362
             |||||| ||||||||||||||  ||||||||||||||||||| |||||||| || |||||
Sbjct: 73262 gcttcaaagaagcttattctgtgccaccgcttcgcaaagctcctcctcatacagtaaaac 73203

                                                                
Query: 363   tctgggagaggctgcggctttgggtacaggccttggcagtcctggcggcat 413
             ||| |  |||| ||| |||||||  ||||||||||||| |||||| |||||
Sbjct: 73202 tctagtcgaggatgcagctttggacacaggccttggcaatcctggtggcat 73152



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   tgttttggagcctttggggt 537
             ||||||||||||||||||||
Sbjct: 73054 tgttttggagcctttggggt 73035
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                            
Query: 303      gcttcatagaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaac 362
                |||||| ||||||||||||||  ||||||||||||||||||| |||||||| || |||||
Sbjct: 15219563 gcttcaaagaagcttattctgtgccaccgcttcgcaaagctcctcctcatacagtaaaac 15219504

                                                                   
Query: 363      tctgggagaggctgcggctttgggtacaggccttggcagtcctggcggcat 413
                ||| |  |||| ||| |||||||  ||||||||||||| |||||| |||||
Sbjct: 15219503 tctagtcgaggatgcagctttggacacaggccttggcaatcctggtggcat 15219453



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 518      tgttttggagcctttggggt 537
                ||||||||||||||||||||
Sbjct: 15219355 tgttttggagcctttggggt 15219336
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>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
              complete sequence
          Length = 129420

 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                          
Query: 303    gcttcatagaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaac 362
              |||||| ||||||||||||||  ||||||||||||||||||| |||||||| || |||||
Sbjct: 128176 gcttcaaagaagcttattctgtgccaccgcttcgcaaagctcctcctcatacagtaaaac 128117

                                                                 
Query: 363    tctgggagaggctgcggctttgggtacaggccttggcagtcctggcggcat 413
              ||| |  |||| ||| |||||||  ||||||||||||| |||||| |||||
Sbjct: 128116 tctagtcgaggatgcagctttggacacaggccttggcaatcctggtggcat 128066



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 518    tgttttggagcctttggggt 537
              ||||||||||||||||||||
Sbjct: 127968 tgttttggagcctttggggt 127949
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>dbj|AK103093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K01, full
            insert sequence
          Length = 1395

 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                        
Query: 303  gcttcatagaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaac 362
            |||||| ||||||||||||||  ||||||||||||||||||| |||||||| || |||||
Sbjct: 1134 gcttcaaagaagcttattctgtgccaccgcttcgcaaagctcctcctcatacagtaaaac 1075

                                                               
Query: 363  tctgggagaggctgcggctttgggtacaggccttggcagtcctggcggcat 413
            ||| |  |||| ||| |||||||  ||||||||||||| |||||| |||||
Sbjct: 1074 tctagtcgaggatgcagctttggacacaggccttggcaatcctggtggcat 1024



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 68/79 (86%), Gaps = 2/79 (2%)
 Strand = Plus / Minus

                                                                       
Query: 518 tgttttggagcctttggggtcctttggggtggccaccctcacatcctttgccgtctattc 577
           |||||||||||||||||||| | ||||||| |  | || ||||||| ||||| || || |
Sbjct: 926 tgttttggagcctttggggttc-ttggggtagaaatccgcacatcc-ttgccatcaatcc 869

                              
Query: 578 tgctcatgaaaggccaatg 596
           |||||||||||||||||||
Sbjct: 868 tgctcatgaaaggccaatg 850
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  101 bits (51), Expect = 3e-18
 Identities = 96/111 (86%)
 Strand = Plus / Minus

                                                                            
Query: 303      gcttcatagaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaac 362
                |||||| ||||||||||||||  ||||||||||||||||||| |||||||| || |||||
Sbjct: 15227804 gcttcaaagaagcttattctgtgccaccgcttcgcaaagctcctcctcatacagtaaaac 15227745

                                                                   
Query: 363      tctgggagaggctgcggctttgggtacaggccttggcagtcctggcggcat 413
                ||| |  |||| ||| |||||||  ||||||||||||| |||||| |||||
Sbjct: 15227744 tctagtcgaggatgcagctttggacacaggccttggcaatcctggtggcat 15227694



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 518      tgttttggagcctttggggt 537
                ||||||||||||||||||||
Sbjct: 15227596 tgttttggagcctttggggt 15227577
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>ref|NM_196682.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0016G17.11), mRNA
          Length = 699

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                       
Query: 310 agaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaactctggga 369
           ||||||||||||||  ||||||||||||||||||| |||||||| || |||||||| |  
Sbjct: 695 agaagcttattctgtgccaccgcttcgcaaagctcctcctcatacagtaaaactctagtc 636

                                                       
Query: 370 gaggctgcggctttgggtacaggccttggcagtcctggcggcat 413
           |||| ||| |||||||  ||||||||||||| |||||| |||||
Sbjct: 635 gaggatgcagctttggacacaggccttggcaatcctggtggcat 592



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 518 tgttttggagcctttggggt 537
           ||||||||||||||||||||
Sbjct: 494 tgttttggagcctttggggt 475
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>gb|AY111422.1| Zea mays CL9217_1 mRNA sequence
          Length = 570

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 304 cttcatagaagcttattctgcaccaccgcttcgcaaagctcttcctcatatagcaaaact 363
           ||||| |||||||| |||||  ||||||||||||||||||| ||||| ||  | ||||||
Sbjct: 236 cttcagagaagcttgttctgtgccaccgcttcgcaaagctcctcctcgtaccgtaaaact 295

                
Query: 364 ctggg 368
           |||||
Sbjct: 296 ctggg 300
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>emb|CT030226.8| Mouse DNA sequence from clone RP24-98O3 on chromosome 16, complete
              sequence
          Length = 162238

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 604    cggaggagggggtcttgttttg 625
              ||||||||||||||||||||||
Sbjct: 135103 cggaggagggggtcttgttttg 135124
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>gb|AC137150.11| Mus musculus chromosome 18, clone RP23-342A15, complete sequence
          Length = 213513

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 518   tgttttggagcctttggggtc 538
             |||||||||||||||||||||
Sbjct: 80431 tgttttggagcctttggggtc 80451
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>gb|AC127237.3| Mus musculus BAC clone RP24-363G13 from chromosome 3, complete sequence
          Length = 136362

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 77    aaaccagacttttggtccttatgag 101
             ||||||| |||||||||||||||||
Sbjct: 13442 aaaccaggcttttggtccttatgag 13418
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>emb|CR933679.1| Homo sapiens mRNA; cDNA DKFZp781F1071 (from clone DKFZp781F1071)
          Length = 3051

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  taagcactatatatacattat 244
            |||||||||||||||||||||
Sbjct: 2570 taagcactatatatacattat 2590
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>gb|AC112919.5| Homo sapiens X BAC RP11-294J19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 82410

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 62   acaaaaccagggaacaaacca 82
            |||||||||||||||||||||
Sbjct: 8120 acaaaaccagggaacaaacca 8140
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>gb|AC008421.6| Homo sapiens chromosome 5 clone CTC-298E16, complete sequence
          Length = 97895

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   taagcactatatatacattat 244
             |||||||||||||||||||||
Sbjct: 15695 taagcactatatatacattat 15675
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>gb|AC068933.11| Homo sapiens chromosome 8, clone RP11-760J15, complete sequence
          Length = 183437

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    acaaaaccagggaacaaacca 82
             |||||||||||||||||||||
Sbjct: 90472 acaaaaccagggaacaaacca 90492
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>gb|AC154538.2| Mus musculus BAC clone RP23-451M23 from chromosome 16, complete sequence
          Length = 176390

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 100    agcaggagagtatgacaggct 120
              |||||||||||||||||||||
Sbjct: 100630 agcaggagagtatgacaggct 100650
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>gb|AC008410.6| Homo sapiens chromosome 5 clone CTC-280C13, complete sequence
          Length = 133218

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    taagcactatatatacattat 244
              |||||||||||||||||||||
Sbjct: 105018 taagcactatatatacattat 104998
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>gb|AC102164.7| Mus musculus chromosome 3, clone RP23-438M14, complete sequence
          Length = 184952

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 77    aaaccagacttttggtccttatgag 101
             ||||||| |||||||||||||||||
Sbjct: 50168 aaaccaggcttttggtccttatgag 50192
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>gb|AY571644.1| Breviceps fuscus recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 1470

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 438  tgaaggcaacgaatctgggaa 458
            |||||||||||||||||||||
Sbjct: 1377 tgaaggcaacgaatctgggaa 1397
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>gb|AC159250.2| Mus musculus BAC clone RP24-196J19 from chromosome 12, complete
             sequence
          Length = 193510

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   agacaagacataaatgataa 226
             ||||||||||||||||||||
Sbjct: 25509 agacaagacataaatgataa 25528
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>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence
          Length = 355714

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  aaaaacatacccagagacaa 212
            ||||||||||||||||||||
Sbjct: 3505 aaaaacatacccagagacaa 3486
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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     gcactatatatacattatta 246
               ||||||||||||||||||||
Sbjct: 1100449 gcactatatatacattatta 1100468
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>gb|AC165079.2| Mus musculus BAC clone RP24-92K17 from chromosome 16, complete sequence
          Length = 156977

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   gtacaggccttggcagtcct 405
             ||||||||||||||||||||
Sbjct: 50285 gtacaggccttggcagtcct 50304
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>ref|XM_381034.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG00858.1)
            partial mRNA
          Length = 2349

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   acttttggtccttatgagca 103
            ||||||||||||||||||||
Sbjct: 2275 acttttggtccttatgagca 2294
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>gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, complete sequence
          Length = 204943

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   gcttttggggcttcatagaa 313
             ||||||||||||||||||||
Sbjct: 40917 gcttttggggcttcatagaa 40936
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>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete
             sequence
          Length = 181338

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tgataagcactatatataca 240
             ||||||||||||||||||||
Sbjct: 13014 tgataagcactatatataca 13033
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>gb|AY230147.1| Leishmania major clone B3559 phosphoglycan beta 1,3
            galactosyltransferase 4 (SCG4) gene, complete cds
          Length = 4794

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  aaaaacatacccagagacaa 212
            ||||||||||||||||||||
Sbjct: 3746 aaaaacatacccagagacaa 3765
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>gb|AY230146.1| Leishmania major clone B3979 phosphoglycan beta 1,3
            galactosyltransferase 3 (SCG3) gene, complete cds
          Length = 4543

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  aaaaacatacccagagacaa 212
            ||||||||||||||||||||
Sbjct: 3673 aaaaacatacccagagacaa 3692
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>gb|AY230145.1| Leishmania major clone B3558 divergent H4 histone pseudogene,
            complete sequence; and phosphoglycan beta 1,3
            galactosyltransferase 2 (SCG2) gene, complete cds
          Length = 7496

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  aaaaacatacccagagacaa 212
            ||||||||||||||||||||
Sbjct: 6008 aaaaacatacccagagacaa 6027
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>gb|AY230144.1| Leishmania major clone B3547 phosphoglycan beta 1,3
            galactosyltransferase 1 (SCG1) gene, complete cds
          Length = 5665

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  aaaaacatacccagagacaa 212
            ||||||||||||||||||||
Sbjct: 4183 aaaaacatacccagagacaa 4202
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>ref|XM_965298.1| PREDICTED: Tribolium castaneum similar to photoreceptor-specific
           nuclear receptor isoform b (LOC658951), mRNA
          Length = 1428

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 agacgccgcagccggagctt 434
           ||||||||||||||||||||
Sbjct: 790 agacgccgcagccggagctt 771
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>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 554    cctcacatcctttgccgtct 573
              ||||||||||||||||||||
Sbjct: 101194 cctcacatcctttgccgtct 101175
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>emb|AL035476.7|PFMAL4P3 Plasmodium falciparum MAL4P3
          Length = 349751

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    tatatatacattattatgag 250
              ||||||||||||||||||||
Sbjct: 269364 tatatatacattattatgag 269345
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>emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, complete genome; segment 4/4
          Length = 237523

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    gcactatatatacattatta 246
              ||||||||||||||||||||
Sbjct: 226609 gcactatatatacattatta 226628
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>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence
          Length = 128856

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    tatacattattatgagatga 254
              ||||||||||||||||||||
Sbjct: 115820 tatacattattatgagatga 115801
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>gb|AC140322.4| Mus musculus BAC clone RP23-413F14 from chromosome 14, complete
             sequence
          Length = 205679

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   gcttttggggcttcatagaa 313
             ||||||||||||||||||||
Sbjct: 50268 gcttttggggcttcatagaa 50249
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>gb|AC012378.10| Homo sapiens chromosome 15 clone RP11-420M1 map 15q21.3, complete
             sequence
          Length = 199289

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   gataagcactatatatacattatt 245
             |||||||||| |||||||||||||
Sbjct: 36903 gataagcactttatatacattatt 36926
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>dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, map 22, complete
             sequences
          Length = 174520

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 532   tggggtcctttggggtggccaccc 555
             |||||||||||| |||||||||||
Sbjct: 65913 tggggtcctttgtggtggccaccc 65936
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>dbj|BS000235.1| Pan troglodytes chromosome 22 clone:PTB-013J17, map 22, complete
             sequences
          Length = 100580

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 532   tggggtcctttggggtggccaccc 555
             |||||||||||| |||||||||||
Sbjct: 16599 tggggtcctttgtggtggccaccc 16622
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>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 532   tggggtcctttggggtggccaccc 555
             |||||||||||| |||||||||||
Sbjct: 37092 tggggtcctttgtggtggccaccc 37115
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>emb|BX296559.14| Zebrafish DNA sequence from clone CH211-285F17 in linkage group 24,
             complete sequence
          Length = 171695

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   actatatatacattattatg 248
             ||||||||||||||||||||
Sbjct: 65518 actatatatacattattatg 65537
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>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171
             region, complete sequence
          Length = 158063

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 532   tggggtcctttggggtggccaccc 555
             |||||||||||| |||||||||||
Sbjct: 37092 tggggtcctttgtggtggccaccc 37115


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,040,018
Number of Sequences: 3902068
Number of extensions: 6040018
Number of successful extensions: 116490
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116336
Number of HSP's gapped (non-prelim): 153
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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