Clone Information

BLAST Search Result

Clone Name	rbags20k06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	176	6e-41
2	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	176	6e-41
3	dbj\|AK069816.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	176	6e-41
4	dbj\|AP000615.1\| Oryza sativa (japonica cultivar-group) genomic D...	176	6e-41
5	gb\|AY109085.1\| Zea mays PCO124752 mRNA sequence	168	1e-38
6	dbj\|AK058465.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
7	gb\|AY105283.1\| Zea mays PCO124753 mRNA sequence	92	3e-15
8	ref\|XM_493822.1\| Oryza sativa (japonica cultivar-group), predic...	76	2e-10
9	emb\|AL596326.5\| Human DNA sequence from clone RP11-373J16 on chr...	44	0.58
10	gb\|L43057.1\|XELINTA3S Xenopus laevis integrin alpha 3 subunit mR...	44	0.58
11	gb\|CP000115.1\| Nitrobacter winogradskyi Nb-255, complete genome	42	2.3
12	gb\|AC006528.5\| Arabidopsis thaliana chromosome 2 clone F9B22 map...	42	2.3
13	ref\|NM_060296.2\| Caenorhabditis elegans ZC247.2 (ZC247.2) mRNA, ...	42	2.3
14	dbj\|AK037861.1\| Mus musculus 16 days neonate thymus cDNA, RIKEN ...	42	2.3
15	dbj\|BS000227.1\| Pan troglodytes chromosome 22 clone:PTB-059D22, ...	42	2.3
16	emb\|Z80221.2\|CEZC247 Caenorhabditis elegans Cosmid ZC247, comple...	42	2.3
17	emb\|AL845298.5\| Mouse DNA sequence from clone RP23-280N11 on chr...	42	2.3
18	gb\|AC115067.7\| Mus musculus chromosome 5, clone RP24-404B4, comp...	40	9.1
19	gb\|AC113446.10\| Mus musculus chromosome 5, clone RP23-258C6, com...	40	9.1
20	ref\|NM_020651.2\| Homo sapiens pellino homolog 1 (Drosophila) (PE...	40	9.1
21	gb\|AC007865.8\| Trypanosoma brucei chromosome 2 clone RPCI93-30M2...	40	9.1
22	gb\|AE017150.2\| Trypanosoma brucei chromosome 2, complete sequence	40	9.1
23	ref\|XM_615035.2\| PREDICTED: Bos taurus similar to pellino protei...	40	9.1
24	gb\|AY915712.1\| Schistosoma japonicum SJCHGC08867 protein mRNA, p...	40	9.1
25	ref\|XM_536015.2\| PREDICTED: Canis familiaris similar to CG9410-P...	40	9.1
26	ref\|XM_946578.1\| Trypanosoma brucei TREU927 hypothetical protein...	40	9.1
27	gb\|AF461903.1\| Homo sapiens FP7162 mRNA, complete cds	40	9.1
28	gb\|BC063611.1\| Homo sapiens pellino homolog 1 (Drosophila), mRNA...	40	9.1
29	ref\|XM_538508.2\| PREDICTED: Canis familiaris similar to pellino ...	40	9.1
30	gb\|AC123807.4\| Mus musculus BAC clone RP24-157J13 from chromosom...	40	9.1
31	gb\|AC125279.1\| Mus musculus BAC clone RP23-433F5 from 8, complet...	40	9.1
32	ref\|XM_960978.1\| Plasmodium falciparum 3D7 hypothetical protein ...	40	9.1
33	gb\|AY364257.1\| Homo sapiens clone peg2514 pellino (PELI1) mRNA, ...	40	9.1
34	gb\|BC050533.1\| Homo sapiens pellino homolog 1 (Drosophila), mRNA...	40	9.1
35	emb\|AL590822.36\| Human DNA sequence from clone RP11-181G12 on ch...	40	9.1
36	emb\|AL445237.16\| Human DNA sequence from clone RP13-238F13 on ch...	40	9.1
37	emb\|AL441985.9\| Human DNA sequence from clone RP11-417D4 on chro...	40	9.1
38	emb\|AL357713.11\| Human DNA sequence from clone RP11-3J23 on chro...	40	9.1
39	emb\|CR382398.1\| Plasmodium falciparum chromosome 6, complete seq...	40	9.1
40	gb\|AC153511.4\| Mus musculus 10 BAC RP23-102N12 (Roswell Park Can...	40	9.1
41	gb\|AC164578.5\| Mus musculus BAC RP23-15E20 (Roswell Park Cancer...	40	9.1
42	gb\|AF300987.1\| Homo sapiens pellino related intracellular signal...	40	9.1
43	gb\|BC050019.1\| Homo sapiens pellino homolog 1 (Drosophila), mRNA...	40	9.1
44	gb\|BC042957.1\| Homo sapiens cDNA clone IMAGE:5278322	40	9.1
45	dbj\|AK126870.1\| Homo sapiens cDNA FLJ44922 fis, clone BRAMY3011865	40	9.1
46	gb\|AC116992.2\| Homo sapiens chromosome 3 clone RP11-668D4, compl...	40	9.1
47	dbj\|AK027668.1\| Homo sapiens cDNA FLJ14762 fis, clone NT2RP30034...	40	9.1
48	gb\|AC008453.6\| Homo sapiens chromosome 5 clone CTC-345K18, compl...	40	9.1
49	gb\|AC011383.6\| Homo sapiens chromosome 5 clone CTB-140J7, comple...	40	9.1
50	gb\|AF302505.1\|AF302505 Homo sapiens pellino 1 (PELI1) mRNA, comp...	40	9.1
51	gb\|AC012368.6\| Homo sapiens BAC clone RP11-547M24 from 2, comple...	40	9.1
52	emb\|BX649152.1\|HSM809304 Homo sapiens mRNA; cDNA DKFZp686C18116 ...	40	9.1
53	gb\|AC005411.1\|AC005411 Homo sapiens chromosome 17, clone hRPK.72...	40	9.1
54	emb\|AJ278859.1\|HSA278859 Homo sapiens mRNA for Pellino protein (...	40	9.1
55	gb\|AC117231.4\| Mus musculus BAC clone RP23-394M5 from 8, complet...	40	9.1
56	emb\|BX088720.8\| Zebrafish DNA sequence from clone CH211-195M2 in...	40	9.1
57	emb\|CR392029.12\| Zebrafish DNA sequence from clone DKEY-188H10 i...	40	9.1

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  176 bits (89), Expect = 6e-41
 Identities = 275/331 (83%), Gaps = 7/331 (2%)
 Strand = Plus / Plus

                                                                           
Query: 331     tatcagaatttggggggcgaccgtgct-cctgatgctttaaaaggcccagtggaaccgaa 389
               ||||||||||||||||| |||| |||| |||||||||||||| || ||| | ||||| ||
Sbjct: 1700223 tatcagaatttggggggagacc-tgctacctgatgctttaaagggtccacttgaaccaaa 1700281

                                                                           
Query: 390     aggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtc 449
                ||||| || |||||||||||||| ||||| || |||||| | ||||| || | ||| ||
Sbjct: 1700282 tggatcggcatcatcaaaagaatcaaaccgaccgaaatttgttgagcttttcggtgaatc 1700341

                                                                           
Query: 450     aaatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgact 509
                ||||| | | |  |||| ||||||||| || |||  ||||| ||||||||||| |||||
Sbjct: 1700342 gaatccagttacattctcacctttggagttgtttatggagtcaaacctggaaaaacgact 1700401

                                                                           
Query: 510     ttcctgtgggacgg---cgctgtcctgggatctgaaggaatcaaaccttccgaagttata 566
               |||||| |||| |    |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 1700402 ttcctgagggaagaatccgctctcctgggatctgaaggaatcgaaccttcctaagttata 1700461

                                                                           
Query: 567     ggaggagcttgtcgtcacgactttcaccgaacttcggtgagaatccagacgtgtatgcag 626
                ||||||| | || || || ||||||| ||| || |||||||||||||| ||||||||| 
Sbjct: 1700462 tgaggagc-tatcatcgcggctttcactgaattttggtgagaatccagatgtgtatgca- 1700519

                                              
Query: 627     ggggaacttggaacggaatcgtcaaagaatg 657
               || ||||||||||| ||||| ||||||||||
Sbjct: 1700520 ggtgaacttggaacagaatcatcaaagaatg 1700550

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  176 bits (89), Expect = 6e-41
 Identities = 275/331 (83%), Gaps = 7/331 (2%)
 Strand = Plus / Plus

                                                                           
Query: 331     tatcagaatttggggggcgaccgtgct-cctgatgctttaaaaggcccagtggaaccgaa 389
               ||||||||||||||||| |||| |||| |||||||||||||| || ||| | ||||| ||
Sbjct: 1700221 tatcagaatttggggggagacc-tgctacctgatgctttaaagggtccacttgaaccaaa 1700279

                                                                           
Query: 390     aggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtc 449
                ||||| || |||||||||||||| ||||| || |||||| | ||||| || | ||| ||
Sbjct: 1700280 tggatcggcatcatcaaaagaatcaaaccgaccgaaatttgttgagcttttcggtgaatc 1700339

                                                                           
Query: 450     aaatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgact 509
                ||||| | | |  |||| ||||||||| || |||  ||||| ||||||||||| |||||
Sbjct: 1700340 gaatccagttacattctcacctttggagttgtttatggagtcaaacctggaaaaacgact 1700399

                                                                           
Query: 510     ttcctgtgggacgg---cgctgtcctgggatctgaaggaatcaaaccttccgaagttata 566
               |||||| |||| |    |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 1700400 ttcctgagggaagaatccgctctcctgggatctgaaggaatcgaaccttcctaagttata 1700459

                                                                           
Query: 567     ggaggagcttgtcgtcacgactttcaccgaacttcggtgagaatccagacgtgtatgcag 626
                ||||||| | || || || ||||||| ||| || |||||||||||||| ||||||||| 
Sbjct: 1700460 tgaggagc-tatcatcgcggctttcactgaattttggtgagaatccagatgtgtatgca- 1700517

                                              
Query: 627     ggggaacttggaacggaatcgtcaaagaatg 657
               || ||||||||||| ||||| ||||||||||
Sbjct: 1700518 ggtgaacttggaacagaatcatcaaagaatg 1700548

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>dbj|AK069816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034E02, full
            insert sequence
          Length = 3782

 Score =  176 bits (89), Expect = 6e-41
 Identities = 275/331 (83%), Gaps = 7/331 (2%)
 Strand = Plus / Minus

                                                                        
Query: 331  tatcagaatttggggggcgaccgtgct-cctgatgctttaaaaggcccagtggaaccgaa 389
            ||||||||||||||||| |||| |||| |||||||||||||| || ||| | ||||| ||
Sbjct: 3400 tatcagaatttggggggagacc-tgctacctgatgctttaaagggtccacttgaaccaaa 3342

                                                                        
Query: 390  aggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtc 449
             ||||| || |||||||||||||| ||||| || |||||| | ||||| || | ||| ||
Sbjct: 3341 tggatcggcatcatcaaaagaatcaaaccgaccgaaatttgttgagcttttcggtgaatc 3282

                                                                        
Query: 450  aaatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgact 509
             ||||| | | |  |||| ||||||||| || |||  ||||| ||||||||||| |||||
Sbjct: 3281 gaatccagttacattctcacctttggagttgtttatggagtcaaacctggaaaaacgact 3222

                                                                        
Query: 510  ttcctgtgggacgg---cgctgtcctgggatctgaaggaatcaaaccttccgaagttata 566
            |||||| |||| |    |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 3221 ttcctgagggaagaatccgctctcctgggatctgaaggaatcgaaccttcctaagttata 3162

                                                                        
Query: 567  ggaggagcttgtcgtcacgactttcaccgaacttcggtgagaatccagacgtgtatgcag 626
             ||||||| | || || || ||||||| ||| || |||||||||||||| ||||||||| 
Sbjct: 3161 tgaggagc-tatcatcgcggctttcactgaattttggtgagaatccagatgtgtatgca- 3104

                                           
Query: 627  ggggaacttggaacggaatcgtcaaagaatg 657
            || ||||||||||| ||||| ||||||||||
Sbjct: 3103 ggtgaacttggaacagaatcatcaaagaatg 3073

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>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score =  176 bits (89), Expect = 6e-41
 Identities = 275/331 (83%), Gaps = 7/331 (2%)
 Strand = Plus / Plus

                                                                          
Query: 331    tatcagaatttggggggcgaccgtgct-cctgatgctttaaaaggcccagtggaaccgaa 389
              ||||||||||||||||| |||| |||| |||||||||||||| || ||| | ||||| ||
Sbjct: 112686 tatcagaatttggggggagacc-tgctacctgatgctttaaagggtccacttgaaccaaa 112744

                                                                          
Query: 390    aggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtc 449
               ||||| || |||||||||||||| ||||| || |||||| | ||||| || | ||| ||
Sbjct: 112745 tggatcggcatcatcaaaagaatcaaaccgaccgaaatttgttgagcttttcggtgaatc 112804

                                                                          
Query: 450    aaatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgact 509
               ||||| | | |  |||| ||||||||| || |||  ||||| ||||||||||| |||||
Sbjct: 112805 gaatccagttacattctcacctttggagttgtttatggagtcaaacctggaaaaacgact 112864

                                                                          
Query: 510    ttcctgtgggacgg---cgctgtcctgggatctgaaggaatcaaaccttccgaagttata 566
              |||||| |||| |    |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 112865 ttcctgagggaagaatccgctctcctgggatctgaaggaatcgaaccttcctaagttata 112924

                                                                          
Query: 567    ggaggagcttgtcgtcacgactttcaccgaacttcggtgagaatccagacgtgtatgcag 626
               ||||||| | || || || ||||||| ||| || |||||||||||||| ||||||||| 
Sbjct: 112925 tgaggagc-tatcatcgcggctttcactgaattttggtgagaatccagatgtgtatgca- 112982

                                             
Query: 627    ggggaacttggaacggaatcgtcaaagaatg 657
              || ||||||||||| ||||| ||||||||||
Sbjct: 112983 ggtgaacttggaacagaatcatcaaagaatg 113013

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>gb|AY109085.1| Zea mays PCO124752 mRNA sequence
          Length = 805

 Score =  168 bits (85), Expect = 1e-38
 Identities = 272/331 (82%), Gaps = 5/331 (1%)
 Strand = Plus / Minus

                                                                       
Query: 330 atatcagaatttggggggcgaccgtgctcctgatgctttaaaaggcccagtggaaccgaa 389
           ||||||||| ||||| || |||||   ||| |||||||||||||| ||| | ||||||||
Sbjct: 574 atatcagaacttgggtggagaccggcttcccgatgctttaaaaggtccacttgaaccgaa 515

                                                                       
Query: 390 aggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtc 449
            || || || ||||||||||| || ||||||||||||||||  ||||| ||   || |||
Sbjct: 514 tgggtcggcgtcatcaaaagagtcaaaccggccaaaatttcgtgagctattccctgtgtc 455

                                                                       
Query: 450 aaatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgact 509
           |||||||| | |  ||||||| ||||||||| | |  |||||||||||||| || || ||
Sbjct: 454 aaatcctgatacattctcgcccttggagctgctaatggagtcgaacctggagaaacggct 395

                                                                       
Query: 510 ttcctgtgggacggcgc---tgtcctgggatctgaaggaatcaaaccttccgaagttata 566
           |||||| |||| ||  |   |||| ||||||||||||||||||||||| |||||||||||
Sbjct: 394 ttcctgagggaaggatccagtgtcttgggatctgaaggaatcaaacctcccgaagttata 335

                                                                       
Query: 567 ggaggagcttgtcgtcacgactttcaccgaacttcggtgagaatccagacgtgtatgcag 626
            ||||||| | |||||||| ||||| || || || || ||||| ||||| ||||||||| 
Sbjct: 334 agaggagc-tatcgtcacggctttcgccaaattttggagagaacccagatgtgtatgca- 277

                                          
Query: 627 ggggaacttggaacggaatcgtcaaagaatg 657
           || ||||||||||| |||||||| |||||||
Sbjct: 276 ggagaacttggaacagaatcgtcgaagaatg 246

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>dbj|AK058465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A11, full
           insert sequence
          Length = 736

 Score =  133 bits (67), Expect = 8e-28
 Identities = 206/249 (82%), Gaps = 5/249 (2%)
 Strand = Plus / Minus

                                                                       
Query: 331 tatcagaatttggggggcgaccgtgct-cctgatgctttaaaaggcccagtggaaccgaa 389
           ||||||||||||||||| |||| |||| |||||||||||||| || ||| | ||||| ||
Sbjct: 268 tatcagaatttggggggagacc-tgctacctgatgctttaaagggtccacttgaaccaaa 210

                                                                       
Query: 390 aggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtc 449
            ||||| || |||||||||||||| ||||| || |||||| | ||||| || | ||| ||
Sbjct: 209 tggatcggcatcatcaaaagaatcaaaccgaccgaaatttgttgagcttttcggtgaatc 150

                                                                       
Query: 450 aaatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgact 509
            ||||| | | |  |||| ||||||||| || |||  ||||| ||||||||||| |||||
Sbjct: 149 gaatccagttacattctcacctttggagttgtttatggagtcaaacctggaaaaacgact 90

                                                                       
Query: 510 ttcctgtgggacg---gcgctgtcctgggatctgaaggaatcaaaccttccgaagttata 566
           |||||| |||| |    |||| |||||||||||||||||||| |||||||| ||||||||
Sbjct: 89  ttcctgagggaagaatccgctctcctgggatctgaaggaatcgaaccttcctaagttata 30

                    
Query: 567 ggaggagct 575
            ||||||||
Sbjct: 29  tgaggagct 21

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>gb|AY105283.1| Zea mays PCO124753 mRNA sequence
          Length = 1399

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 260/328 (79%), Gaps = 5/328 (1%)
 Strand = Plus / Minus

                                                                        
Query: 331  tatcagaatttggggggcgaccgtgctcctgatgctttaaaaggcccagtggaaccgaaa 390
            |||||||| ||||| || |||||   ||| |||||||||||||| ||  | |||||||| 
Sbjct: 1109 tatcagaacttgggtggagaccggcttccagatgctttaaaaggtccgctcgaaccgaac 1050

                                                                        
Query: 391  ggatcagcttcatcaaaagaatcgaaccggccaaaatttctcgagctgtttgatgagtca 450
            ||||| |  ||||| ||||| || ||||| ||||||||||| ||||| ||   ||  || 
Sbjct: 1049 ggatcggtgtcatcgaaagagtcaaaccgaccaaaatttcttgagctattccctgtatcg 990

                                                                        
Query: 451  aatcctgctgcgctctcgcctttggagctggttacagagtcgaacctggaaaagcgactt 510
            ||||||| | |   |||||||||||||||| | |  ||||| |||||||| || | ||||
Sbjct: 989  aatcctgatacatcctcgcctttggagctgctaatggagtcaaacctggagaaaccactt 930

                                                                        
Query: 511  tcctgtgggacggcgc---tgtcctgggatctgaaggaatcaaaccttccgaagttatag 567
            ||||| |||| |   |   |||| ||||||||||||||||||||| | || ||| |||| 
Sbjct: 929  tcctgggggaagaacccagtgtcttgggatctgaaggaatcaaacttcccaaagctataa 870

                                                                        
Query: 568  gaggagcttgtcgtcacgactttcaccgaacttcggtgagaatccagacgtgtatgcagg 627
            ||||||| | || ||||| ||||||||||| || || ||||| ||||| ||||||||| |
Sbjct: 869  gaggagc-tatcatcacggctttcaccgaattttggagagaacccagatgtgtatgca-g 812

                                        
Query: 628  gggaacttggaacggaatcgtcaaagaa 655
            ||| |||||| || ||||| ||||||||
Sbjct: 811  gggtacttgggacagaatcatcaaagaa 784

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>ref|XM_493822.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1323

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 131/162 (80%)
 Strand = Plus / Minus

                                                                        
Query: 359  ctgatgctttaaaaggcccagtggaaccgaaaggatcagcttcatcaaaagaatcgaacc 418
            ||||||||||||| || ||| | ||||| || ||||| || |||||||||||||| ||||
Sbjct: 1258 ctgatgctttaaagggtccacttgaaccaaatggatcggcatcatcaaaagaatcaaacc 1199

                                                                        
Query: 419  ggccaaaatttctcgagctgtttgatgagtcaaatcctgctgcgctctcgcctttggagc 478
            | || |||||| | ||||| || | ||| || ||||| | | |  |||| ||||||||| 
Sbjct: 1198 gaccgaaatttgttgagcttttcggtgaatcgaatccagttacattctcacctttggagt 1139

                                                      
Query: 479  tggttacagagtcgaacctggaaaagcgactttcctgtggga 520
            || |||  ||||| ||||||||||| ||||||||||| ||||
Sbjct: 1138 tgtttatggagtcaaacctggaaaaacgactttcctgaggga 1097



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 90/105 (85%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 553  cttccgaagttataggaggagcttgtcgtcacgactttcaccgaacttcggtgagaatcc 612
            ||||| |||||||| ||||||||  || || || ||||||| ||| || |||||||||||
Sbjct: 1076 cttcctaagttatatgaggagcta-tcatcgcggctttcactgaattttggtgagaatcc 1018

                                                         
Query: 613  agacgtgtatgcagggggaacttggaacggaatcgtcaaagaatg 657
            ||| ||||||||| || ||||||||||| ||||| ||||||||||
Sbjct: 1017 agatgtgtatgca-ggtgaacttggaacagaatcatcaaagaatg 974

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>emb|AL596326.5| Human DNA sequence from clone RP11-373J16 on chromosome 1 Contains the
             3' end of a novel gene, a glyceraldehyde-3-phosphate
             dehydrogenase (GAPD) pseudogene and a CpG island, complete
             sequence
          Length = 178309

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 295   tctcaagagacaaatcctcata 316
             ||||||||||||||||||||||
Sbjct: 40597 tctcaagagacaaatcctcata 40576

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>gb|L43057.1|XELINTA3S Xenopus laevis integrin alpha 3 subunit mRNA, 3' end of cds
          Length = 4775

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 155  gaggacaggaaaaatgcacaca 176
            ||||||||||||||||||||||
Sbjct: 2647 gaggacaggaaaaatgcacaca 2626

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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 519     gacggcgctgtcctgggatct 539
               |||||||||||||||||||||
Sbjct: 3277852 gacggcgctgtcctgggatct 3277832

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>gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B22 map mi398, complete
             sequence
          Length = 95765

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    acaaaaagaaagaaacgggaa 33
             |||||||||||||||||||||
Sbjct: 51176 acaaaaagaaagaaacgggaa 51156

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>ref|NM_060296.2| Caenorhabditis elegans ZC247.2 (ZC247.2) mRNA, complete cds
          Length = 2329

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 392  gatcagcttcatcaaaagaat 412
            |||||||||||||||||||||
Sbjct: 2045 gatcagcttcatcaaaagaat 2065

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>dbj|AK037861.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130056N24 product:unclassifiable, full
            insert sequence
          Length = 2095

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    tattgtacaaaaagaaagaaa 27
            |||||||||||||||||||||
Sbjct: 2070 tattgtacaaaaagaaagaaa 2090

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>dbj|BS000227.1| Pan troglodytes chromosome 22 clone:PTB-059D22, map 22, complete
             sequences
          Length = 148847

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 348   cgaccgtgctcctgatgcttt 368
             |||||||||||||||||||||
Sbjct: 35646 cgaccgtgctcctgatgcttt 35666

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>emb|Z80221.2|CEZC247 Caenorhabditis elegans Cosmid ZC247, complete sequence
          Length = 34321

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   gatcagcttcatcaaaagaat 412
             |||||||||||||||||||||
Sbjct: 18620 gatcagcttcatcaaaagaat 18600

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>emb|AL845298.5| Mouse DNA sequence from clone RP23-280N11 on chromosome 2, complete
              sequence
          Length = 213826

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      tattgtacaaaaagaaagaaa 27
              |||||||||||||||||||||
Sbjct: 161987 tattgtacaaaaagaaagaaa 162007

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>gb|AC115067.7| Mus musculus chromosome 5, clone RP24-404B4, complete sequence
          Length = 163303

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 5      tatattgtacaaaaagaaagaaac 28
              |||||| |||||||||||||||||
Sbjct: 120255 tatattctacaaaaagaaagaaac 120232

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>gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, complete sequence
          Length = 158563

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     tatattgtacaaaaagaaagaaac 28
             |||||| |||||||||||||||||
Sbjct: 40338 tatattctacaaaaagaaagaaac 40315

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>ref|NM_020651.2| Homo sapiens pellino homolog 1 (Drosophila) (PELI1), mRNA
          Length = 7136

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  tttgatgagtcaaatcctgc 458
            ||||||||||||||||||||
Sbjct: 4523 tttgatgagtcaaatcctgc 4504

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>gb|AC007865.8| Trypanosoma brucei chromosome 2 clone RPCI93-30M24, complete sequence
          Length = 148533

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ttgtacaaaaagaaagaaac 28
             ||||||||||||||||||||
Sbjct: 34970 ttgtacaaaaagaaagaaac 34951

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>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      ttgtacaaaaagaaagaaac 28
              ||||||||||||||||||||
Sbjct: 876272 ttgtacaaaaagaaagaaac 876291

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>ref|XM_615035.2| PREDICTED: Bos taurus similar to pellino protein (LOC535054), mRNA
          Length = 1801

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 662 tttgatgagtcaaatcctgc 643

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>gb|AY915712.1| Schistosoma japonicum SJCHGC08867 protein mRNA, partial cds
          Length = 750

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 546 atcaaaccttccgaagttat 565
           ||||||||||||||||||||
Sbjct: 163 atcaaaccttccgaagttat 182

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>ref|XM_536015.2| PREDICTED: Canis familiaris similar to CG9410-PA, isoform A
           (LOC478853), mRNA
          Length = 1142

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 175 cagggcgaacagaagtgagt 194
           ||||||||||||||||||||
Sbjct: 39  cagggcgaacagaagtgagt 58

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>ref|XM_946578.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.2.4950)
           partial mRNA
          Length = 4275

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 9   ttgtacaaaaagaaagaaac 28
           ||||||||||||||||||||
Sbjct: 191 ttgtacaaaaagaaagaaac 172

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>gb|AF461903.1| Homo sapiens FP7162 mRNA, complete cds
          Length = 2572

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 acgtggggatggaggacagg 163
           ||||||||||||||||||||
Sbjct: 615 acgtggggatggaggacagg 634

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>gb|BC063611.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA (cDNA clone
           MGC:70885 IMAGE:4992160), complete cds
          Length = 3502

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 873 tttgatgagtcaaatcctgc 854

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>ref|XM_538508.2| PREDICTED: Canis familiaris similar to pellino protein (LOC481388),
           mRNA
          Length = 3112

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 494 tttgatgagtcaaatcctgc 475

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>gb|AC123807.4| Mus musculus BAC clone RP24-157J13 from chromosome 13, complete sequence
          Length = 187710

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 528    gtcctgggatctgaaggaatcaaa 551
              ||||||||||||||||||| ||||
Sbjct: 148873 gtcctgggatctgaaggaaacaaa 148896

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>gb|AC125279.1| Mus musculus BAC clone RP23-433F5 from 8, complete sequence
          Length = 201197

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 556    ccgaagttataggaggagcttgtc 579
              |||| |||||||||||||||||||
Sbjct: 191211 ccgaggttataggaggagcttgtc 191234

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>ref|XM_960978.1| Plasmodium falciparum 3D7 hypothetical protein (PFF0400w) partial
            mRNA
          Length = 3969

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   caaaaagaaagaaacgggaa 33
            ||||||||||||||||||||
Sbjct: 1154 caaaaagaaagaaacgggaa 1173

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>gb|AY364257.1| Homo sapiens clone peg2514 pellino (PELI1) mRNA, complete cds
          Length = 1917

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 485 tttgatgagtcaaatcctgc 466

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>gb|BC050533.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA (cDNA clone
           IMAGE:6187655)
          Length = 3511

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 881 tttgatgagtcaaatcctgc 862

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>emb|AL590822.36| Human DNA sequence from clone RP11-181G12 on chromosome 1 Contains the
             3' end of the PRKCZ gene for protein kinase C zeta, a
             novel gene, a novel gene (FLJ31031), the SKI gene for
             v-ski sarcoma viral oncogene homolog (avian) and five CpG
             islands, complete sequence
          Length = 179836

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   acgtggggatggaggacagg 163
             ||||||||||||||||||||
Sbjct: 58160 acgtggggatggaggacagg 58141

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>emb|AL445237.16| Human DNA sequence from clone RP13-238F13 on chromosome 10 Contains the
              OAT gene for ornithine aminotransferase (gyrate atrophy), a
              homeobox protein pseudogene, the 5' end of the LHPP gene
              for phospholysine phosphohistidine inorganic pyrophosphate
              phosphatase, a RPS10 (40S ribosomal protein 10) pseudogene
              and four CpG islands, complete sequence
          Length = 182955

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 363    tgctttaaaaggcccagtgg 382
              ||||||||||||||||||||
Sbjct: 116449 tgctttaaaaggcccagtgg 116430

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>emb|AL441985.9| Human DNA sequence from clone RP11-417D4 on chromosome X Contains a
             pseudogene similar to part of ubiquitin-conjugating enzyme
             E2, complete sequence
          Length = 185969

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   aaatgaatatcagaatttgg 343
             ||||||||||||||||||||
Sbjct: 52518 aaatgaatatcagaatttgg 52499

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>emb|AL357713.11| Human DNA sequence from clone RP11-3J23 on chromosome 1 Contains part
            of the RERE gene for arginine-glutamic acid dipeptide
            (RE) repeats (FLJ38775), complete sequence
          Length = 103513

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    tatatattgtacaaaaagaa 22
            ||||||||||||||||||||
Sbjct: 8490 tatatattgtacaaaaagaa 8509

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>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5
          Length = 349418

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     caaaaagaaagaaacgggaa 33
              ||||||||||||||||||||
Sbjct: 338941 caaaaagaaagaaacgggaa 338960

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>gb|AC153511.4| Mus musculus 10 BAC RP23-102N12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196715

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      atatattgtacaaaaagaaagaaa 27
              |||||||| |||||||||||||||
Sbjct: 112021 atatattggacaaaaagaaagaaa 112044

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>gb|AC164578.5| Mus musculus  BAC RP23-15E20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 225564

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 529    tcctgggatctgaaggaatc 548
              ||||||||||||||||||||
Sbjct: 165865 tcctgggatctgaaggaatc 165884

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>gb|AF300987.1| Homo sapiens pellino related intracellular signalling molecule
           (PRISM) mRNA, complete cds
          Length = 1503

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 500 tttgatgagtcaaatcctgc 481

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>gb|BC050019.1| Homo sapiens pellino homolog 1 (Drosophila), mRNA (cDNA clone
           MGC:50990 IMAGE:5296990), complete cds
          Length = 3571

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 899 tttgatgagtcaaatcctgc 880

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>gb|BC042957.1| Homo sapiens cDNA clone IMAGE:5278322
          Length = 1145

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  cactataaacagagaaaaat 99
           ||||||||||||||||||||
Sbjct: 245 cactataaacagagaaaaat 226

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>dbj|AK126870.1| Homo sapiens cDNA FLJ44922 fis, clone BRAMY3011865
          Length = 3572

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  acgtggggatggaggacagg 163
            ||||||||||||||||||||
Sbjct: 2257 acgtggggatggaggacagg 2276

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>gb|AC116992.2| Homo sapiens chromosome 3 clone RP11-668D4, complete sequence
          Length = 204162

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      attgtacaaaaagaaagaaa 27
              ||||||||||||||||||||
Sbjct: 104650 attgtacaaaaagaaagaaa 104631

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>dbj|AK027668.1| Homo sapiens cDNA FLJ14762 fis, clone NT2RP3003491, weakly similar
           to Drosophila melanogaster Pelle associated protein
           Pellino (Pli) mRNA
          Length = 2866

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 256 tttgatgagtcaaatcctgc 237

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>gb|AC008453.6| Homo sapiens chromosome 5 clone CTC-345K18, complete sequence
          Length = 145064

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    ataattccacaaatgaatat 333
              ||||||||||||||||||||
Sbjct: 134203 ataattccacaaatgaatat 134222

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>gb|AC011383.6| Homo sapiens chromosome 5 clone CTB-140J7, complete sequence
          Length = 93407

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   ataattccacaaatgaatat 333
             ||||||||||||||||||||
Sbjct: 58503 ataattccacaaatgaatat 58484

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>gb|AF302505.1|AF302505 Homo sapiens pellino 1 (PELI1) mRNA, complete cds
          Length = 7136

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  tttgatgagtcaaatcctgc 458
            ||||||||||||||||||||
Sbjct: 4523 tttgatgagtcaaatcctgc 4504

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>gb|AC012368.6| Homo sapiens BAC clone RP11-547M24 from 2, complete sequence
          Length = 196206

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 439   tttgatgagtcaaatcctgc 458
             ||||||||||||||||||||
Sbjct: 70559 tttgatgagtcaaatcctgc 70578

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>emb|BX649152.1|HSM809304 Homo sapiens mRNA; cDNA DKFZp686C18116 (from clone DKFZp686C18116)
          Length = 4442

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  tttgatgagtcaaatcctgc 458
            ||||||||||||||||||||
Sbjct: 1801 tttgatgagtcaaatcctgc 1782

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>gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.721_K_1, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     cactataaacagagaaaaat 99
              ||||||||||||||||||||
Sbjct: 104769 cactataaacagagaaaaat 104788

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>emb|AJ278859.1|HSA278859 Homo sapiens mRNA for Pellino protein (ORF1)
          Length = 1257

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 439 tttgatgagtcaaatcctgc 458
           ||||||||||||||||||||
Sbjct: 485 tttgatgagtcaaatcctgc 466

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>gb|AC117231.4| Mus musculus BAC clone RP23-394M5 from 8, complete sequence
          Length = 195936

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 556   ccgaagttataggaggagcttgtc 579
             |||| |||||||||||||||||||
Sbjct: 40757 ccgaggttataggaggagcttgtc 40780

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>emb|BX088720.8| Zebrafish DNA sequence from clone CH211-195M2 in linkage group 22,
             complete sequence
          Length = 190269

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     atatattgtacaaaaagaaagaaa 27
             |||||||||||| |||||||||||
Sbjct: 98758 atatattgtacagaaagaaagaaa 98735

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>emb|CR392029.12| Zebrafish DNA sequence from clone DKEY-188H10 in linkage group 3,
             complete sequence
          Length = 130871

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gtccactttgtacgtgggga 152
             ||||||||||||||||||||
Sbjct: 40225 gtccactttgtacgtgggga 40206


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,061,329
Number of Sequences: 3902068
Number of extensions: 7061329
Number of successful extensions: 121895
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121676
Number of HSP's gapped (non-prelim): 195
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result